# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_56 - 228 Cons_hypoth95 PF03602.10 183 7.4e-06 18.3 0.0 1 2 0.00027 0.027 6.8 0.0 112 168 18 76 9 83 0.68 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 Cons_hypoth95 PF03602.10 183 7.4e-06 18.3 0.0 2 2 3.5e-05 0.0035 9.6 0.0 41 62 162 183 144 218 0.77 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_19 - 518 ABC_tran PF00005.22 137 8.8e-05 15.7 0.1 1 1 5.3e-06 0.00027 14.2 0.0 12 37 226 251 217 288 0.81 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 ABC_tran PF00005.22 137 0.00011 15.4 0.0 1 1 4.3e-06 0.00022 14.5 0.0 16 35 162 181 152 211 0.87 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_56 - 228 TIGR00095 TIGR00095 194 0.00029 13.1 0.0 1 2 0.0015 0.15 4.3 0.0 123 138 19 34 8 79 0.74 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 TIGR00095 TIGR00095 194 0.00029 13.1 0.0 2 2 0.00023 0.023 6.9 0.0 53 86 164 199 152 218 0.77 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_52 - 425 HHH_5 PF14520.1 60 0.00035 13.7 0.0 1 1 9.2e-06 0.00092 12.3 0.0 9 37 184 212 175 229 0.93 # 45334 # 46608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_6 - 383 MobB PF03205.9 140 1.9e-05 17.3 0.0 1 2 0.017 1.7 1.3 0.0 14 60 61 108 61 127 0.88 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_6 - 383 MobB PF03205.9 140 1.9e-05 17.3 0.0 2 2 3.1e-06 0.00031 13.4 0.0 5 26 162 183 160 193 0.90 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_69 - 199 TilS_C PF11734.3 74 0.00017 13.7 0.0 1 1 5.1e-06 0.00051 12.2 0.0 29 45 7 23 6 28 0.88 # 57469 # 58065 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_19 - 518 AAA_19 PF13245.1 76 9.5e-05 15.1 0.0 1 1 2.6e-06 0.00026 13.7 0.0 10 46 226 259 218 268 0.79 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_48 - 215 CbiA PF01656.18 195 1.2e-09 30.7 0.1 1 1 1.8e-11 1.8e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_56 - 228 MethyltransfD12 PF02086.10 260 0.00034 13.0 0.0 1 2 0.014 1.4 1.1 0.0 175 188 18 31 8 91 0.80 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 MethyltransfD12 PF02086.10 260 0.00034 13.0 0.0 2 2 3.3e-05 0.0033 9.7 0.0 16 46 157 189 148 197 0.78 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_31 - 96 Sigma70_r4_2 PF08281.7 54 4.9e-08 25.3 0.1 1 1 1.4e-09 1.4e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 29055 # 29342 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_19 - 518 AAA_23 PF13476.1 202 0.00013 15.2 0.2 1 1 9.7e-06 0.00049 13.4 0.0 20 38 226 244 208 249 0.84 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 AAA_23 PF13476.1 202 0.00022 14.5 0.0 1 1 7.3e-06 0.00037 13.8 0.0 19 40 157 178 142 209 0.83 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_56 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 37.8 0.1 1 2 2.6e-07 2.6e-05 17.2 0.0 57 114 7 71 2 74 0.69 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 37.8 0.1 2 2 9.7e-08 9.7e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_19 - 518 AAA_30 PF13604.1 196 0.00032 13.2 0.0 1 1 5.8e-06 0.00058 12.4 0.0 4 44 211 251 209 276 0.84 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_69 - 199 TIGR02433 TIGR02433 47 0.00024 13.2 0.1 1 1 7.7e-06 0.00077 11.6 0.0 30 45 8 23 7 25 0.91 # 57469 # 58065 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_31 - 96 GerE PF00196.14 58 1.4e-06 20.5 0.0 1 1 1.9e-08 1.9e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 29055 # 29342 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_80 - 764 TraG-D_C PF12696.2 128 5.2e-07 22.5 0.2 1 1 1.2e-08 1.2e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 67205 # 69496 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_48 - 215 MipZ PF09140.6 261 2.4e-08 26.2 2.3 1 2 0.0008 0.08 4.8 0.5 7 25 8 26 2 38 0.71 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_48 - 215 MipZ PF09140.6 261 2.4e-08 26.2 2.3 2 2 9e-09 9e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_56 - 228 UPF0020 PF01170.13 180 1.5e-05 17.6 0.0 1 2 0.00028 0.028 6.9 0.0 103 121 17 35 4 89 0.71 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 UPF0020 PF01170.13 180 1.5e-05 17.6 0.0 2 2 7.3e-05 0.0073 8.8 0.0 28 54 163 189 160 221 0.66 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_25 - 198 Trp_repressor PF01371.14 88 0.00042 13.2 0.0 1 1 6.2e-06 0.00062 12.6 0.0 1 40 103 142 103 146 0.95 # 24951 # 25544 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.370 1_19 - 518 AAA PF00004.24 132 0.00025 14.2 0.0 1 3 0.045 4.5 0.4 0.0 38 57 81 100 26 114 0.78 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 518 AAA PF00004.24 132 0.00025 14.2 0.0 2 3 0.00033 0.033 7.3 0.0 1 21 228 248 228 278 0.83 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 518 AAA PF00004.24 132 0.00025 14.2 0.0 3 3 0.017 1.7 1.8 0.0 9 66 442 508 436 515 0.64 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_66 - 653 KorB PF08535.5 93 1.8e-05 17.8 0.0 1 1 6e-07 6e-05 16.1 0.0 2 43 152 193 151 204 0.93 # 54309 # 56267 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.585 1_56 - 228 N6_N4_Mtase PF01555.13 231 7e-36 116.7 0.0 1 2 7.6e-15 7.6e-13 41.3 0.0 1 114 21 124 21 137 0.89 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 N6_N4_Mtase PF01555.13 231 7e-36 116.7 0.0 2 2 9.2e-25 9.2e-23 73.8 0.0 169 228 141 200 126 203 0.90 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_50 - 327 Hydantoinase_A PF01968.13 290 7.1e-09 28.0 0.2 1 2 1.7e-06 0.00017 13.6 0.1 66 98 154 185 141 192 0.79 # 43943 # 44923 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_50 - 327 Hydantoinase_A PF01968.13 290 7.1e-09 28.0 0.2 2 2 5.5e-06 0.00055 11.9 0.0 211 263 244 296 201 301 0.86 # 43943 # 44923 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_19 - 518 AAA_16 PF13191.1 185 9.9e-05 15.3 0.0 1 1 6.4e-06 0.00032 13.6 0.0 8 51 213 252 212 301 0.78 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 AAA_16 PF13191.1 185 0.00029 13.7 0.0 1 1 1.2e-05 0.00061 12.7 0.0 27 52 160 188 148 282 0.82 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_6 - 383 AAA_22 PF13401.1 131 1e-05 18.6 0.0 1 1 4.9e-07 2.5e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 AAA_22 PF13401.1 131 0.00027 14.0 0.0 1 1 1.3e-05 0.00064 12.8 0.0 6 28 227 249 222 330 0.77 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_76 - 283 Methyltransf_27 PF13708.1 194 9.3e-67 217.2 0.0 1 1 1.3e-68 1.3e-66 216.7 0.0 2 194 85 278 84 278 0.96 # 62623 # 63471 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_19 - 518 AAA_29 PF13555.1 62 2.8e-05 16.5 0.0 1 1 1.1e-06 5.7e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 AAA_29 PF13555.1 62 3.8e-05 16.1 0.0 1 1 2.3e-06 0.00011 14.6 0.0 26 44 160 178 151 186 0.83 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_50 - 327 TIGR02350 TIGR02350 596 9.1e-05 13.5 0.6 1 3 0.083 8.3 -2.9 0.0 362 381 80 99 67 130 0.59 # 43943 # 44923 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_50 - 327 TIGR02350 TIGR02350 596 9.1e-05 13.5 0.6 2 3 0.00011 0.011 6.7 0.0 175 200 159 181 142 198 0.82 # 43943 # 44923 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_50 - 327 TIGR02350 TIGR02350 596 9.1e-05 13.5 0.6 3 3 0.00048 0.048 4.5 0.0 271 348 220 295 205 308 0.85 # 43943 # 44923 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_75 - 84 HTH_3 PF01381.17 55 2.8e-05 16.9 0.0 1 2 1e-06 0.0001 15.1 0.0 1 34 6 39 6 45 0.90 # 61792 # 62043 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_75 - 84 HTH_3 PF01381.17 55 2.8e-05 16.9 0.0 2 2 0.083 8.3 -0.7 0.0 39 52 67 80 65 83 0.66 # 61792 # 62043 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 99 YMF19 PF02326.10 86 0.00036 14.0 1.1 1 1 3.6e-06 0.00036 14.0 1.1 13 68 43 95 32 98 0.82 # 25541 # 25837 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_66 - 653 HTH_23 PF13384.1 50 5.6e-07 22.1 0.2 1 1 2.2e-07 7.2e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 54309 # 56267 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.585 1_75 - 84 HTH_23 PF13384.1 50 3.6e-05 16.3 0.3 1 2 1.1e-05 0.00035 13.2 0.1 17 33 14 30 6 38 0.86 # 61792 # 62043 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_75 - 84 HTH_23 PF13384.1 50 3.6e-05 16.3 0.3 2 2 0.072 2.4 1.0 0.0 5 22 63 82 59 83 0.75 # 61792 # 62043 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_31 - 96 HTH_23 PF13384.1 50 3.7e-05 16.3 0.0 1 1 1.5e-06 5e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 29055 # 29342 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_26 - 99 zf-DHHC PF01529.15 174 0.003 9.9 3.1 1 1 3.3e-05 0.0033 9.7 3.1 95 155 4 60 1 87 0.71 # 25541 # 25837 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_75 - 84 HTH_19 PF12844.2 64 7.8e-05 15.6 0.0 1 1 1.2e-06 0.00012 15.1 0.0 7 53 9 56 5 67 0.87 # 61792 # 62043 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_75 - 84 DUF1870 PF08965.5 118 0.00029 13.4 1.2 1 1 3.7e-06 0.00037 13.1 1.2 1 75 1 78 1 81 0.69 # 61792 # 62043 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_31 - 96 HTH_29 PF13551.1 112 0.00015 14.9 0.0 1 1 4.3e-06 0.00021 14.3 0.0 8 36 33 60 27 76 0.79 # 29055 # 29342 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_66 - 653 HTH_29 PF13551.1 112 0.00024 14.2 0.2 1 1 2e-05 0.001 12.2 0.0 4 37 145 178 142 234 0.85 # 54309 # 56267 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.585 1_19 - 518 G-alpha PF00503.15 389 0.00064 11.3 0.0 1 2 0.054 5.4 -1.6 0.0 234 272 70 113 29 117 0.80 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 518 G-alpha PF00503.15 389 0.00064 11.3 0.0 2 2 1.9e-05 0.0019 9.8 0.0 58 87 225 254 214 322 0.84 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_74 - 53 UBA PF00627.26 37 0.00066 12.5 0.0 1 1 1.1e-05 0.0011 11.7 0.0 6 22 20 36 15 36 0.87 # 61603 # 61761 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_9 - 195 DNA_pol3_delta PF06144.8 172 2.1e-06 20.3 0.0 1 1 3e-08 3e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 8318 # 8902 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_80 - 764 TrwB_AAD_bind PF10412.4 386 2.3e-06 19.3 0.2 1 2 9.3e-05 0.0093 7.4 0.0 11 32 132 153 126 157 0.84 # 67205 # 69496 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_80 - 764 TrwB_AAD_bind PF10412.4 386 2.3e-06 19.3 0.2 2 2 3e-05 0.003 9.0 0.1 247 332 440 525 427 555 0.88 # 67205 # 69496 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_48 - 215 TIGR01968 TIGR01968 261 7.7e-05 14.7 2.1 1 2 8.1e-06 0.0004 12.3 0.8 3 50 3 44 1 49 0.80 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_48 - 215 TIGR01968 TIGR01968 261 7.7e-05 14.7 2.1 2 2 0.017 0.84 1.5 0.0 101 140 63 102 49 123 0.75 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_50 - 327 TIGR01968 TIGR01968 261 0.00044 12.2 1.5 1 1 3.5e-05 0.0018 10.2 1.4 46 128 63 155 60 215 0.74 # 43943 # 44923 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_6 - 383 AAA_18 PF13238.1 129 1.5e-05 18.2 0.0 1 1 6e-07 3e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 AAA_18 PF13238.1 129 0.00038 13.7 0.0 1 1 2.1e-05 0.0011 12.2 0.0 1 18 228 245 228 316 0.86 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_52 - 425 IMS_HHH PF11798.3 32 1e-08 27.8 0.2 1 1 3.1e-10 3.1e-08 26.3 0.2 6 32 175 201 170 201 0.92 # 45334 # 46608 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_56 - 228 Methyltransf_15 PF09445.5 164 0.00079 11.9 0.0 1 2 0.045 4.5 -0.3 0.0 53 79 4 29 2 32 0.90 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 Methyltransf_15 PF09445.5 164 0.00079 11.9 0.0 2 2 4.2e-05 0.0042 9.5 0.0 3 31 166 194 164 209 0.86 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_97 - 235 DUF3810 PF12725.2 318 0.00087 11.1 0.8 1 1 1.4e-05 0.0014 10.4 0.8 90 174 106 189 95 194 0.86 # 84598 # 85302 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_6 - 383 DUF87 PF01935.12 229 0.00061 12.5 0.0 1 1 1.1e-05 0.0011 11.7 0.0 28 56 162 191 161 192 0.88 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_31 - 96 HTH_28 PF13518.1 52 0.00015 14.7 0.0 1 1 4.3e-06 0.00043 13.2 0.0 9 38 33 62 26 75 0.86 # 29055 # 29342 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_75 - 84 HTH_31 PF13560.1 64 6.3e-07 22.5 2.0 1 2 1e-08 1e-06 21.9 1.2 3 43 3 43 2 57 0.86 # 61792 # 62043 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_75 - 84 HTH_31 PF13560.1 64 6.3e-07 22.5 2.0 2 2 0.1 10 -0.6 0.0 17 34 65 72 44 82 0.58 # 61792 # 62043 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_19 - 518 T2SE PF00437.15 272 2.7e-41 134.1 0.0 1 1 9.6e-43 4.8e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 T2SE PF00437.15 272 8e-36 116.2 0.0 1 1 2.4e-37 1.2e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_50 - 327 StbA PF06406.6 318 1.2e-156 513.3 1.2 1 1 1.4e-158 1.4e-156 513.2 1.2 1 318 1 319 1 319 1.00 # 43943 # 44923 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_6 - 383 AAA_17 PF13207.1 121 1.9e-05 18.4 0.1 1 2 4.7e-06 0.00024 14.9 0.0 3 47 161 208 161 251 0.76 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_6 - 383 AAA_17 PF13207.1 121 1.9e-05 18.4 0.1 2 2 0.086 4.3 1.1 0.1 24 113 332 363 274 374 0.60 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 AAA_17 PF13207.1 121 2.4e-05 18.1 0.3 1 1 2e-06 0.0001 16.0 0.0 1 24 227 255 227 347 0.72 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 AAA_25 PF13481.1 194 0.0002 13.7 0.0 1 1 7e-06 0.00035 12.9 0.0 24 58 148 182 124 207 0.78 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 AAA_25 PF13481.1 194 0.00031 13.1 0.0 1 2 8.7e-05 0.0044 9.3 0.0 25 65 217 260 200 270 0.72 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 518 AAA_25 PF13481.1 194 0.00031 13.1 0.0 2 2 0.039 1.9 0.7 0.0 153 190 297 337 292 340 0.74 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 518 AAA_14 PF13173.1 128 0.0009 12.1 0.0 1 1 3.7e-05 0.0037 10.1 0.0 5 30 228 254 225 286 0.80 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_48 - 215 VirC1 PF07015.6 231 0.00041 12.4 0.0 1 2 0.00073 0.073 5.0 0.0 3 29 3 29 1 36 0.81 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_48 - 215 VirC1 PF07015.6 231 0.00041 12.4 0.0 2 2 0.00052 0.052 5.5 0.0 87 190 77 181 59 194 0.70 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_31 - 96 HTH_Tnp_ISL3 PF13542.1 52 6e-05 15.1 0.0 1 1 9.7e-07 9.7e-05 14.5 0.0 29 50 38 59 34 60 0.89 # 29055 # 29342 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_44 - 197 PaaX PF07848.7 70 0.0003 13.7 0.0 1 1 6.7e-06 0.00067 12.6 0.0 15 68 23 80 13 82 0.77 # 39703 # 40293 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.650 1_6 - 383 RNA_helicase PF00910.17 107 9.6e-05 15.5 0.0 1 1 1.9e-06 0.00019 14.5 0.0 2 28 161 187 160 205 0.83 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_6 - 383 ATP_bind_1 PF03029.12 238 4.7e-05 15.9 0.0 1 1 7.2e-07 7.2e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 DAP3 PF10236.4 309 0.00063 11.6 0.0 1 1 1.2e-05 0.0012 10.7 0.0 21 42 223 244 215 253 0.86 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_30 - 178 TIGR00922 TIGR00922 172 0.00079 11.9 0.0 1 1 9.5e-06 0.00095 11.6 0.0 47 103 51 109 24 142 0.80 # 28080 # 28613 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.436 1_92 - 1015 AAA_10 PF12846.2 304 1.1e-30 99.9 0.0 1 1 1e-31 2.6e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 79446 # 82490 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_80 - 764 AAA_10 PF12846.2 304 2.6e-05 16.6 1.0 1 1 3.1e-06 7.8e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 67205 # 69496 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_19 - 518 AAA_10 PF12846.2 304 0.00023 13.5 0.0 1 1 1.7e-05 0.00042 12.7 0.0 4 30 228 256 226 321 0.81 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 AAA_10 PF12846.2 304 0.00051 12.4 0.0 1 1 4e-05 0.001 11.4 0.0 2 21 158 177 157 196 0.83 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_64 - 176 SSB PF00436.20 104 6.5e-41 131.4 0.4 1 1 8.6e-43 8.6e-41 131.0 0.4 1 101 6 109 6 112 0.96 # 53432 # 53959 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/af2e8aed-33be-4b12-bbe3-b158bc11fa0c # Target file: checkm_output/bins/pm883/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm883/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/af2e8aed-33be-4b12-bbe3-b158bc11fa0c checkm_output/bins/pm883/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:17:16 2017 # [ok]