# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_72 - 388 KaiC PF06745.8 227 0.0007 11.5 0.0 1 1 1.4e-05 0.0012 10.7 0.0 11 59 144 191 137 201 0.76 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_12 - 186 HTH_IclR PF09339.5 52 1.1e-05 17.7 0.2 1 1 4.6e-07 4.2e-05 15.9 0.0 15 40 155 180 151 181 0.85 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_72 - 388 ABC_tran PF00005.22 137 0.0001 15.4 0.0 1 1 2.2e-06 0.0002 14.5 0.0 15 33 156 174 147 217 0.82 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_12 - 186 HTH_22 PF13309.1 64 0.00022 13.8 1.2 1 1 1.2e-05 0.0011 11.6 0.1 35 63 156 179 143 180 0.76 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_72 - 388 FtsK_SpoIIIE PF01580.13 205 9.7e-05 14.7 0.0 1 1 2.1e-06 0.00019 13.7 0.0 41 59 155 173 135 184 0.85 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_12 - 186 HTH_40 PF14493.1 91 0.00058 12.9 0.6 1 1 2.1e-05 0.0019 11.2 0.1 7 32 152 177 147 183 0.89 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_12 - 186 HTH_38 PF13936.1 44 5.4e-06 18.7 0.0 1 1 1.2e-07 5.4e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_51 - 48 HTH_38 PF13936.1 44 0.00038 12.8 0.0 1 1 1.1e-05 0.00051 12.4 0.0 30 43 7 20 5 21 0.90 # 39170 # 39313 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 1_72 - 388 MobB PF03205.9 140 0.00048 12.6 0.0 1 1 1e-05 0.00095 11.7 0.0 4 25 156 177 154 190 0.85 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_33 - 83 HTH_8 PF02954.14 42 9.2e-06 18.0 0.1 1 1 1.8e-07 1.6e-05 17.2 0.1 18 36 14 32 13 33 0.92 # 28246 # 28494 # 1 # ID=1_33;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 2_12 - 1017 AAA_19 PF13245.1 76 0.00034 13.2 0.0 1 1 1.2e-05 0.0011 11.6 0.0 14 32 492 509 481 523 0.86 # 7982 # 11032 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_49 - 235 rve PF00665.21 120 3e-13 42.7 0.1 1 2 0.015 1.4 1.9 0.0 78 102 27 49 6 54 0.84 # 36965 # 37669 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_49 - 235 rve PF00665.21 120 3e-13 42.7 0.1 2 2 6.1e-14 5.5e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 36965 # 37669 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_72 - 388 AAA_23 PF13476.1 202 1.8e-06 21.2 0.5 1 1 4.3e-08 3.9e-06 20.0 0.2 19 44 152 177 136 195 0.84 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_67 - 122 CPSase_L_D3 PF02787.14 123 0.00073 12.1 0.1 1 1 1.2e-05 0.0011 11.6 0.1 50 96 45 91 21 101 0.79 # 45427 # 45792 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.415 1_72 - 388 SMC_N PF02463.14 220 0.00093 11.2 0.0 1 1 1.8e-05 0.0016 10.4 0.0 25 50 153 178 146 195 0.81 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_49 - 235 HTH_Tnp_1 PF01527.15 76 0.00023 13.9 0.3 1 1 5.4e-06 0.00049 12.9 0.3 4 51 6 58 4 63 0.79 # 36965 # 37669 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 696 TraG-D_C PF12696.2 128 0.00012 14.7 0.1 1 1 2.4e-06 0.00022 13.9 0.1 3 94 437 524 435 556 0.78 # 2427 # 4514 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_49 - 235 DDE_3 PF13358.1 146 0.00062 12.3 0.0 1 1 2.1e-05 0.0019 10.7 0.0 32 90 82 141 59 146 0.87 # 36965 # 37669 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_17 - 421 DDE_Tnp_1 PF01609.16 213 7.2e-35 113.2 0.2 1 1 1.7e-36 1.6e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 15696 # 16958 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_27 - 416 ACT PF01842.20 66 0.0001 14.6 0.3 1 2 0.038 3.5 0.1 0.0 13 27 232 246 231 246 0.91 # 23853 # 25100 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_27 - 416 ACT PF01842.20 66 0.0001 14.6 0.3 2 2 1.2e-05 0.0011 11.2 0.0 7 27 319 339 316 339 0.93 # 23853 # 25100 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_33 - 83 HTH_37 PF13744.1 80 3.9e-05 16.2 0.0 1 1 8.8e-07 8e-05 15.2 0.0 24 54 7 37 4 46 0.89 # 28246 # 28494 # 1 # ID=1_33;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_38 - 325 Hydantoinase_A PF01968.13 290 1e-07 24.1 3.6 1 2 5.2e-07 4.7e-05 15.3 0.1 67 96 158 186 140 193 0.83 # 30555 # 31529 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 325 Hydantoinase_A PF01968.13 290 1e-07 24.1 3.6 2 2 3.1e-05 0.0029 9.5 0.1 212 265 248 301 191 322 0.76 # 30555 # 31529 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_72 - 388 AAA_16 PF13191.1 185 0.00058 12.6 0.0 1 1 1.2e-05 0.0011 11.7 0.0 25 50 153 178 141 211 0.84 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_72 - 388 AAA_22 PF13401.1 131 3.8e-06 19.8 0.0 1 1 1.9e-07 8.8e-06 18.7 0.0 4 30 152 178 149 243 0.84 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 2_12 - 1017 AAA_22 PF13401.1 131 0.00035 13.5 0.0 1 1 2.4e-05 0.0011 11.9 0.0 8 69 492 557 486 594 0.67 # 7982 # 11032 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_53 - 115 Methyltransf_27 PF13708.1 194 1.5e-31 102.2 0.0 1 1 1.8e-33 1.6e-31 102.1 0.0 86 194 1 110 1 110 0.97 # 39610 # 39954 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 1_72 - 388 AAA_29 PF13555.1 62 7.7e-06 18.2 0.1 1 1 2e-07 1.9e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_12 - 186 HTH_Tnp_IS630 PF01710.11 120 8.5e-05 15.0 0.0 1 1 1.9e-06 0.00018 14.0 0.0 8 44 148 184 145 185 0.90 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_49 - 235 HTH_32 PF13565.1 77 1.2e-06 22.1 0.2 1 1 5.6e-08 5.1e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 36965 # 37669 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_33 - 83 HTH_3 PF01381.17 55 1.7e-09 30.2 0.1 1 1 9.3e-11 2.8e-09 29.5 0.1 4 45 9 50 6 56 0.86 # 28246 # 28494 # 1 # ID=1_33;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_46 - 89 HTH_3 PF01381.17 55 1e-06 21.4 0.0 1 1 4.2e-08 1.3e-06 21.0 0.0 8 36 41 69 33 78 0.88 # 35241 # 35507 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_41 - 160 HTH_3 PF01381.17 55 8.3e-05 15.2 0.2 1 2 0.0022 0.066 5.9 0.0 2 20 15 33 14 37 0.91 # 32942 # 33421 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_41 - 160 HTH_3 PF01381.17 55 8.3e-05 15.2 0.2 2 2 0.00099 0.03 7.0 0.0 1 23 96 118 96 120 0.89 # 32942 # 33421 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_17 - 421 DDE_Tnp_1_4 PF13701.1 449 2.9e-27 87.6 3.5 1 2 0.0052 0.47 1.2 0.0 11 42 5 36 3 62 0.72 # 15696 # 16958 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_17 - 421 DDE_Tnp_1_4 PF13701.1 449 2.9e-27 87.6 3.5 2 2 1.5e-28 1.3e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 15696 # 16958 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_49 - 235 HTH_23 PF13384.1 50 5.5e-06 18.8 0.7 1 2 0.079 1.4 1.6 0.0 7 27 11 35 7 36 0.69 # 36965 # 37669 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_49 - 235 HTH_23 PF13384.1 50 5.5e-06 18.8 0.7 2 2 9.3e-06 0.00017 14.0 0.1 28 42 41 55 40 62 0.87 # 36965 # 37669 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_46 - 89 HTH_23 PF13384.1 50 6.4e-06 18.6 0.0 1 1 5.3e-07 9.7e-06 18.0 0.0 16 39 38 64 33 68 0.83 # 35241 # 35507 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_51 - 48 HTH_23 PF13384.1 50 1.4e-05 17.5 1.1 1 1 1e-06 1.9e-05 17.1 0.7 28 42 8 22 7 30 0.86 # 39170 # 39313 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 1_12 - 186 HTH_23 PF13384.1 50 4e-05 16.0 0.3 1 1 2.2e-06 4e-05 16.0 0.3 5 39 146 180 142 184 0.87 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_33 - 83 HTH_23 PF13384.1 50 4.1e-05 16.0 0.0 1 1 4.4e-06 8e-05 15.1 0.0 15 34 10 31 6 40 0.81 # 28246 # 28494 # 1 # ID=1_33;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_12 - 186 HTH_7 PF02796.10 45 1.7e-13 43.1 0.5 1 1 5.1e-15 4.7e-13 41.6 0.1 1 44 141 181 141 182 0.97 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_33 - 83 HTH_19 PF12844.2 64 3.6e-08 26.2 0.0 1 1 1.2e-09 5.2e-08 25.7 0.0 8 45 10 47 8 56 0.86 # 28246 # 28494 # 1 # ID=1_33;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_46 - 89 HTH_19 PF12844.2 64 7.7e-05 15.5 0.0 1 1 2.3e-06 0.0001 15.1 0.0 4 39 33 69 30 73 0.85 # 35241 # 35507 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_12 - 186 HTH_29 PF13551.1 112 9.8e-05 15.3 0.6 1 2 0.025 2.2 1.3 0.2 24 46 114 136 88 153 0.67 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_12 - 186 HTH_29 PF13551.1 112 9.8e-05 15.3 0.6 2 2 1e-05 0.00093 12.2 0.0 4 35 151 181 148 184 0.90 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_49 - 235 DDE_Tnp_IS66 PF03050.9 271 2.1e-12 39.5 0.3 1 1 3e-14 2.7e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 36965 # 37669 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 1 3 1.7e-05 0.0016 9.8 0.0 16 36 134 154 125 158 0.88 # 2427 # 4514 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_2 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 2 3 9.3e-05 0.0085 7.4 0.1 93 140 235 281 229 303 0.80 # 2427 # 4514 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_2 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 3 3 0.083 7.5 -2.3 0.0 293 323 482 512 405 546 0.58 # 2427 # 4514 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 2_12 - 1017 AAA_18 PF13238.1 129 5e-05 16.4 0.1 1 1 4.2e-06 0.00038 13.6 0.0 2 19 492 509 492 562 0.79 # 7982 # 11032 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_23 - 435 IMS_HHH PF11798.3 32 0.00031 13.6 0.1 1 1 1e-05 0.00092 12.1 0.1 14 32 194 212 183 212 0.85 # 21322 # 22626 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_72 - 388 DUF87 PF01935.12 229 8.5e-05 15.2 0.0 1 1 1.8e-06 0.00017 14.2 0.0 28 45 157 174 155 188 0.89 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_51 - 48 HTH_28 PF13518.1 52 1.2e-05 18.1 0.2 1 1 1e-06 1.9e-05 17.4 0.2 23 36 8 21 4 22 0.92 # 39170 # 39313 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 1_49 - 235 HTH_28 PF13518.1 52 5.3e-05 16.0 1.2 1 1 1.3e-05 0.00023 14.0 1.2 22 36 40 54 13 55 0.76 # 36965 # 37669 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_46 - 89 HTH_28 PF13518.1 52 5.7e-05 15.9 0.0 1 1 4.3e-06 7.9e-05 15.4 0.0 7 34 34 64 33 68 0.82 # 35241 # 35507 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_12 - 186 HTH_28 PF13518.1 52 0.00012 14.9 0.0 1 1 2.1e-05 0.00039 13.2 0.0 8 33 154 179 148 184 0.82 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_33 - 83 HTH_28 PF13518.1 52 0.00038 13.3 0.1 1 1 4.5e-05 0.00083 12.2 0.1 8 29 8 31 6 35 0.78 # 28246 # 28494 # 1 # ID=1_33;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_72 - 388 Miro PF08477.8 119 0.00086 12.6 0.0 1 1 2.1e-05 0.0019 11.5 0.0 4 28 157 186 156 220 0.72 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_33 - 83 HTH_31 PF13560.1 64 1.7e-09 30.6 0.9 1 1 7.4e-11 2.2e-09 30.2 0.9 9 56 9 55 6 72 0.90 # 28246 # 28494 # 1 # ID=1_33;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_41 - 160 HTH_31 PF13560.1 64 1.3e-07 24.5 1.6 1 2 0.0036 0.11 5.6 0.1 6 33 14 41 12 47 0.88 # 32942 # 33421 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_41 - 160 HTH_31 PF13560.1 64 1.3e-07 24.5 1.6 2 2 4.5e-07 1.4e-05 18.1 0.3 4 39 94 129 91 135 0.88 # 32942 # 33421 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_46 - 89 HTH_31 PF13560.1 64 1.9e-06 20.9 0.0 1 1 8.4e-08 2.6e-06 20.4 0.0 2 42 29 69 28 80 0.84 # 35241 # 35507 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_12 - 1017 DUF2075 PF09848.4 352 0.00034 12.4 0.0 1 1 1e-05 0.00096 10.9 0.0 5 22 492 509 489 526 0.84 # 7982 # 11032 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_72 - 388 T2SE PF00437.15 272 2e-23 75.4 0.0 1 1 3.4e-25 3.1e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_38 - 325 StbA PF06406.6 318 3e-157 515.2 0.2 1 1 3.7e-159 3.3e-157 515.1 0.2 1 318 1 322 1 322 0.99 # 30555 # 31529 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_72 - 388 NACHT PF05729.7 166 0.00031 13.2 0.0 1 1 6.6e-06 0.0006 12.3 0.0 4 29 156 181 154 188 0.83 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 2_12 - 1017 AAA_17 PF13207.1 121 4.1e-05 17.2 0.0 1 1 2.9e-06 0.00026 14.6 0.0 3 28 492 523 492 587 0.67 # 7982 # 11032 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_72 - 388 AAA_25 PF13481.1 194 5.1e-06 18.8 0.0 1 1 1.1e-07 1e-05 17.8 0.0 25 53 144 172 122 178 0.89 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_60 - 90 RepA_N PF06970.6 76 0.00045 12.8 0.0 1 1 7.4e-06 0.00068 12.3 0.0 15 44 56 85 54 88 0.92 # 42407 # 42676 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_38 - 325 Hydant_A_N PF05378.8 176 0.00091 11.5 3.9 1 4 0.08 7.2 -1.2 0.0 1 19 2 20 2 48 0.82 # 30555 # 31529 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 325 Hydant_A_N PF05378.8 176 0.00091 11.5 3.9 2 4 0.049 4.5 -0.5 0.0 108 154 38 86 15 103 0.67 # 30555 # 31529 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 325 Hydant_A_N PF05378.8 176 0.00091 11.5 3.9 3 4 0.057 5.2 -0.7 0.0 95 129 113 147 89 153 0.76 # 30555 # 31529 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 325 Hydant_A_N PF05378.8 176 0.00091 11.5 3.9 4 4 3.6e-05 0.0033 9.7 0.2 2 51 170 217 169 226 0.82 # 30555 # 31529 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_46 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.00033 12.6 0.0 1 1 5e-06 0.00045 12.2 0.0 19 49 35 64 33 65 0.91 # 35241 # 35507 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_46 - 89 CENP-B_N PF04218.8 53 0.0013 11.0 0.0 1 1 1.9e-05 0.0017 10.6 0.0 24 49 44 69 34 72 0.88 # 35241 # 35507 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_72 - 388 Ribosomal_S5 PF00333.15 67 2.9e-05 16.6 0.1 1 2 0.00093 0.084 5.5 0.0 26 45 84 103 77 114 0.83 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_72 - 388 Ribosomal_S5 PF00333.15 67 2.9e-05 16.6 0.1 2 2 0.00012 0.011 8.4 0.0 21 54 242 274 230 278 0.91 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_72 - 388 RNA_helicase PF00910.17 107 0.001 12.1 0.0 1 1 2.5e-05 0.0023 10.9 0.0 3 26 157 180 156 197 0.81 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_46 - 89 Phage_CII PF05269.6 91 0.00066 12.5 0.0 1 1 9.2e-06 0.00083 12.2 0.0 17 45 36 64 32 81 0.83 # 35241 # 35507 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_72 - 388 ATP_bind_1 PF03029.12 238 0.00075 11.8 0.0 1 1 1.3e-05 0.0012 11.2 0.0 1 25 157 181 157 191 0.84 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_49 - 235 DDE_Tnp_IS240 PF13610.1 140 6.9e-53 171.2 0.0 1 1 3.2e-54 9.6e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 36965 # 37669 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_52 - 65 DDE_Tnp_IS240 PF13610.1 140 1.2e-10 34.2 0.0 1 1 4.6e-12 1.4e-10 34.1 0.0 98 139 1 42 1 43 0.97 # 39310 # 39504 # 1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 2_3 - 66 DDE_Tnp_IS240 PF13610.1 140 0.00024 13.9 0.0 1 1 8.4e-06 0.00026 13.8 0.0 29 64 18 52 5 58 0.83 # 1873 # 2070 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_46 - 89 HTH_26 PF13443.1 63 0.00024 14.1 0.0 1 1 3.6e-06 0.00033 13.7 0.0 11 47 43 78 33 82 0.90 # 35241 # 35507 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_12 - 186 TrmB PF01978.14 68 5.2e-05 15.7 0.0 1 1 1.1e-06 0.0001 14.8 0.0 19 44 155 180 150 181 0.89 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_46 - 89 HTH_Crp_2 PF13545.1 76 0.00041 12.9 0.0 1 1 6.6e-06 0.0006 12.4 0.0 26 50 40 64 32 65 0.88 # 35241 # 35507 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_12 - 1017 AAA_10 PF12846.2 304 6.9e-42 136.6 0.0 1 1 4.6e-43 1.4e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 7982 # 11032 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_2 - 696 AAA_10 PF12846.2 304 5.7e-10 31.8 0.0 1 1 2.8e-11 8.5e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 2427 # 4514 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_72 - 388 AAA_10 PF12846.2 304 1.2e-06 21.0 0.0 1 1 2.1e-07 6.4e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_12 - 186 HTH_20 PF12840.2 61 3.9e-06 19.4 0.1 1 2 0.0081 0.73 2.5 0.0 33 52 8 27 6 28 0.90 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_12 - 186 HTH_20 PF12840.2 61 3.9e-06 19.4 0.1 2 2 9.1e-06 0.00083 12.0 0.1 3 43 110 177 108 180 0.91 # 11933 # 12490 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_63 - 145 SSB PF00436.20 104 6.6e-32 102.3 0.2 1 1 8.4e-34 7.6e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 43456 # 43890 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_72 - 388 GTP_EFTU PF00009.22 188 0.00099 11.3 0.0 1 1 2e-05 0.0018 10.5 0.0 8 34 157 183 155 195 0.87 # 49652 # 50815 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/0a72177a-4832-4500-9d1c-647becd379cc # Target file: checkm_output/bins/pm88/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm88/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0a72177a-4832-4500-9d1c-647becd379cc checkm_output/bins/pm88/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:17:15 2017 # [ok]