# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 531 ABC_tran PF00005.22 137 4.9e-26 81.0 0.1 1 1 6.1e-27 4.9e-26 81.0 0.1 5 136 345 480 342 481 0.94 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 Sigma54_activat PF00158.21 168 2.8e-05 13.0 0.1 1 1 9.1e-06 7.3e-05 11.6 0.1 19 57 348 385 336 399 0.74 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_23 PF13476.1 202 0.00018 11.2 15.9 1 2 0.032 0.26 0.9 0.1 151 197 74 120 26 125 0.63 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_23 PF13476.1 202 0.00018 11.2 15.9 2 2 1.8e-05 0.00015 11.5 11.4 17 68 348 423 329 526 0.49 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 Zeta_toxin PF06414.7 201 8.8e-06 14.2 0.1 1 1 2.8e-06 2.2e-05 12.9 0.1 17 49 352 385 339 388 0.90 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 SMC_N PF02463.14 220 4e-14 41.7 2.7 1 2 1e-06 8.3e-06 14.5 0.9 4 42 334 369 331 402 0.83 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 SMC_N PF02463.14 220 4e-14 41.7 2.7 2 2 2.4e-10 1.9e-09 26.3 0.0 121 213 427 527 416 530 0.85 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_21 PF13304.1 303 1.5e-09 27.5 23.6 1 3 0.0042 0.034 3.4 6.2 17 105 27 123 3 261 0.60 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_21 PF13304.1 303 1.5e-09 27.5 23.6 2 3 2.5e-07 2e-06 17.2 4.0 1 47 353 394 353 441 0.61 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_21 PF13304.1 303 1.5e-09 27.5 23.6 3 3 6.6e-07 5.3e-06 15.8 1.2 178 303 423 515 388 515 0.68 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA PF00004.24 132 4.5e-05 13.0 0.7 1 1 2.8e-05 0.00022 10.8 0.0 3 31 356 386 354 416 0.80 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 TIGR00064 TIGR00064 279 0.0002 9.6 4.6 1 2 0.047 0.38 -1.1 0.1 18 55 84 122 73 145 0.66 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 TIGR00064 TIGR00064 279 0.0002 9.6 4.6 2 2 1.1e-05 8.8e-05 10.8 1.0 48 100 320 371 296 385 0.63 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_22 PF13401.1 131 4.4e-05 13.0 0.0 1 1 1.8e-05 0.00014 11.4 0.0 6 25 353 372 348 435 0.83 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_29 PF13555.1 62 3.9e-07 19.0 0.2 1 1 1e-07 8.4e-07 17.9 0.2 12 39 342 367 333 374 0.77 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_18 PF13238.1 129 9.9e-06 15.3 6.7 1 1 7.8e-06 6.3e-05 12.7 4.6 2 23 355 396 355 525 0.64 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 Sigma54_activ_2 PF14532.1 138 8.8e-06 15.2 0.0 1 1 2.8e-06 2.2e-05 13.9 0.0 24 58 354 388 344 419 0.82 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 DUF2075 PF09848.4 352 5.1e-06 14.9 0.1 1 1 1.2e-06 1e-05 13.9 0.1 2 97 352 484 351 526 0.70 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 T2SE PF00437.15 272 1.6e-05 13.2 0.6 1 1 4.4e-06 3.5e-05 12.1 0.6 130 160 353 382 314 387 0.81 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 NACHT PF05729.7 166 7.2e-05 11.8 0.1 1 1 2.5e-05 0.0002 10.4 0.1 3 21 354 372 352 381 0.82 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 UPF0079 PF02367.12 123 0.00071 8.6 7.1 1 2 0.035 0.28 0.2 0.1 59 96 298 337 287 347 0.67 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 UPF0079 PF02367.12 123 0.00071 8.6 7.1 2 2 1.5e-05 0.00012 11.1 0.3 11 43 347 379 338 385 0.83 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_17 PF13207.1 121 1.3e-05 15.4 0.0 1 1 4.1e-06 3.3e-05 14.1 0.0 3 21 355 373 353 451 0.88 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 TIGR02211 TIGR02211 221 1.4e-17 53.0 0.7 1 1 1.7e-17 1.3e-16 49.7 0.7 24 211 344 520 315 527 0.82 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_25 PF13481.1 194 8.5e-07 17.8 0.0 1 1 2.1e-07 1.7e-06 16.9 0.0 29 66 347 390 339 440 0.83 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_14 PF13173.1 128 2.4e-05 13.6 4.7 1 3 0.079 0.63 -0.7 0.0 65 81 92 107 37 132 0.68 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_14 PF13173.1 128 2.4e-05 13.6 4.7 2 3 6e-06 4.8e-05 12.7 0.1 4 44 353 393 350 453 0.79 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_14 PF13173.1 128 2.4e-05 13.6 4.7 3 3 0.051 0.41 -0.0 0.1 19 42 491 514 488 528 0.74 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 APS_kinase PF01583.15 157 8.3e-06 14.9 0.1 1 1 1.9e-06 1.5e-05 14.0 0.1 1 30 350 379 350 388 0.85 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 NTPase_1 PF03266.10 168 4e-06 16.0 1.5 1 1 1.4e-06 1.2e-05 14.5 0.5 3 36 355 390 353 395 0.82 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_13 PF13166.1 712 1.5e-06 16.2 1.3 1 2 1.8e-07 1.5e-06 16.2 1.3 2 43 335 378 334 402 0.74 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 1_5 - 531 AAA_13 PF13166.1 712 1.5e-06 16.2 1.3 2 2 0.00048 0.0039 4.9 0.4 529 577 472 517 460 522 0.88 # 4340 # 5932 # 1 # ID=1_5;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.286 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/cd02ad62-b32d-4d1c-b693-4a74f7e1197b # Target file: checkm_output/bins/pm875/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm875/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cd02ad62-b32d-4d1c-b693-4a74f7e1197b checkm_output/bins/pm875/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:16:55 2017 # [ok]