# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_25 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.5 0.0 1 2 0.0004 0.034 6.2 0.0 112 127 18 33 5 81 0.70 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_25 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.5 0.0 2 2 3.9e-05 0.0033 9.5 0.0 41 62 162 183 145 219 0.78 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_19 - 254 ABC_tran PF00005.22 137 4e-37 120.2 0.0 1 1 6.5e-39 5.4e-37 119.8 0.0 1 137 18 167 18 167 0.96 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_25 - 228 TIGR00095 TIGR00095 194 0.00011 14.3 0.0 1 2 0.00062 0.052 5.5 0.0 122 138 18 34 3 79 0.71 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_25 - 228 TIGR00095 TIGR00095 194 0.00011 14.3 0.0 2 2 0.00024 0.021 6.8 0.0 53 86 164 199 155 218 0.77 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 4_3 - 90 DUF2116 PF09889.4 59 0.00024 13.6 0.8 1 2 0.098 8.2 -0.9 0.0 27 40 12 25 10 27 0.76 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 4_3 - 90 DUF2116 PF09889.4 59 0.00024 13.6 0.8 2 2 9.9e-06 0.00084 11.8 0.1 4 15 32 43 29 45 0.87 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 1_20 - 877 FtsK_SpoIIIE PF01580.13 205 1.2e-05 17.5 0.1 1 2 2e-06 0.00017 13.7 0.0 39 63 477 505 464 508 0.84 # 19671 # 22301 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 877 FtsK_SpoIIIE PF01580.13 205 1.2e-05 17.5 0.1 2 2 0.015 1.3 1.1 0.0 75 166 531 626 530 669 0.82 # 19671 # 22301 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 877 MobB PF03205.9 140 0.00021 13.7 0.2 1 2 5.4e-05 0.0023 10.3 0.0 4 37 484 516 482 524 0.79 # 19671 # 22301 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 877 MobB PF03205.9 140 0.00021 13.7 0.2 2 2 0.069 2.9 0.3 0.0 25 64 696 733 691 745 0.86 # 19671 # 22301 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_2 - 763 MobB PF03205.9 140 0.00092 11.6 0.0 1 1 5.5e-05 0.0023 10.3 0.0 7 34 192 219 188 225 0.89 # 3139 # 5427 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_1 - 1046 AAA_19 PF13245.1 76 1.6e-07 23.7 2.0 1 1 1.4e-08 5.8e-07 21.9 0.5 7 74 981 1045 974 1046 0.73 # 2 # 3139 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593 1_26 - 123 AAA_19 PF13245.1 76 0.00057 12.3 0.0 1 1 2.2e-05 0.00091 11.7 0.0 13 37 91 115 82 122 0.78 # 24840 # 25208 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_26 - 123 KTI12 PF08433.5 270 0.00071 11.4 0.1 1 1 1.4e-05 0.0012 10.7 0.1 5 30 92 117 91 120 0.87 # 24840 # 25208 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_25 - 228 MethyltransfD12 PF02086.10 260 0.00037 12.6 0.0 1 2 0.021 1.8 0.6 0.0 175 188 18 31 10 39 0.85 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_25 - 228 MethyltransfD12 PF02086.10 260 0.00037 12.6 0.0 2 2 4e-05 0.0034 9.5 0.0 20 46 163 189 148 197 0.78 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 4_3 - 90 zf-ribbon_3 PF13248.1 26 0.00017 13.5 0.8 1 2 1.2e-05 0.001 11.0 0.2 3 11 32 40 30 47 0.68 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 4_3 - 90 zf-ribbon_3 PF13248.1 26 0.00017 13.5 0.8 2 2 0.018 1.6 0.9 0.0 6 12 71 77 71 85 0.67 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 3_1 - 216 Terminase_5 PF06056.7 58 0.00037 12.8 0.0 1 1 1.3e-05 0.0011 11.3 0.0 16 44 115 143 113 150 0.93 # 655 # 1302 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 2_12 - 283 TIGR00573 TIGR00573 217 2.5e-13 42.3 0.0 1 1 5.1e-15 4.3e-13 41.6 0.0 12 181 107 274 103 281 0.79 # 9564 # 10412 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 2_25 - 228 Methyltransf_26 PF13659.1 117 2.3e-12 39.7 0.1 1 2 6.4e-08 5.3e-06 19.1 0.0 54 114 4 71 2 75 0.72 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_25 - 228 Methyltransf_26 PF13659.1 117 2.3e-12 39.7 0.1 2 2 1e-07 8.6e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_1 - 707 AAA_30 PF13604.1 196 7.4e-20 64.0 0.5 1 1 2.6e-21 7.4e-20 64.0 0.5 93 186 13 106 2 144 0.93 # 3 # 2123 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.609 1_1 - 1046 AAA_30 PF13604.1 196 9.7e-20 63.6 12.5 1 3 0.033 0.92 1.7 0.0 41 86 223 269 218 283 0.84 # 2 # 3139 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593 1_1 - 1046 AAA_30 PF13604.1 196 9.7e-20 63.6 12.5 2 3 1.5e-05 0.00041 12.6 3.9 7 146 420 551 416 561 0.81 # 2 # 3139 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593 1_1 - 1046 AAA_30 PF13604.1 196 9.7e-20 63.6 12.5 3 3 6.2e-18 1.7e-16 53.0 0.4 1 76 968 1046 968 1046 0.92 # 2 # 3139 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593 1_2 - 763 AAA_30 PF13604.1 196 0.00054 12.2 0.0 1 1 4.1e-05 0.0011 11.2 0.0 21 57 188 224 180 230 0.85 # 3139 # 5427 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_19 - 254 SMC_N PF02463.14 220 2.7e-07 22.7 0.1 1 1 1.1e-08 9e-07 21.0 0.1 27 187 31 185 14 212 0.76 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 3_1 - 216 HTH_Tnp_1 PF01527.15 76 1e-22 72.6 0.0 1 1 3.6e-24 3e-22 71.1 0.0 2 69 91 162 90 169 0.87 # 655 # 1302 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 763 TraG-D_C PF12696.2 128 6.8e-21 67.2 0.0 1 1 1.5e-22 1.2e-20 66.3 0.0 1 127 419 541 419 542 0.86 # 3139 # 5427 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_25 - 228 UPF0020 PF01170.13 180 5e-06 18.8 0.0 1 2 0.00013 0.011 7.9 0.0 102 117 16 31 6 77 0.84 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_25 - 228 UPF0020 PF01170.13 180 5e-06 18.8 0.0 2 2 6.3e-05 0.0053 9.0 0.0 28 54 163 189 158 220 0.67 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_17 - 421 DDE_Tnp_1 PF01609.16 213 6.7e-35 113.2 0.2 1 1 1.7e-36 1.4e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 13729 # 14991 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_28 - 484 DivIC PF04977.10 80 0.00078 11.6 4.6 1 1 1.9e-05 0.0016 10.7 4.6 17 66 76 124 72 125 0.92 # 25703 # 27154 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.578 2_19 - 254 AAA_21 PF13304.1 303 1.8e-13 43.7 0.0 1 2 9.3e-09 7.8e-07 21.9 0.0 4 25 33 56 31 81 0.80 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_19 - 254 AAA_21 PF13304.1 303 1.8e-13 43.7 0.0 2 2 4.1e-08 3.4e-06 19.8 0.0 235 285 137 184 112 202 0.92 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_19 - 254 AAA PF00004.24 132 0.00021 14.2 0.0 1 1 5.2e-06 0.00043 13.2 0.0 3 37 33 69 31 240 0.85 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 3_10 - 653 KorB PF08535.5 93 1.5e-05 17.8 0.0 1 1 6.1e-07 5.1e-05 16.1 0.0 2 43 152 193 151 202 0.93 # 6569 # 8527 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 4_3 - 90 zf-C4_Topoisom PF01396.14 39 0.00023 13.3 0.6 1 2 1.8e-05 0.0015 10.7 0.2 2 16 32 46 29 48 0.84 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 4_3 - 90 zf-C4_Topoisom PF01396.14 39 0.00023 13.3 0.6 2 2 0.029 2.5 0.5 0.0 5 14 71 80 70 83 0.67 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 2_25 - 228 N6_N4_Mtase PF01555.13 231 2e-35 114.9 0.0 1 1 1.1e-34 9e-33 106.3 0.0 1 228 21 200 21 203 0.88 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_24 - 321 Hydantoinase_A PF01968.13 290 9.3e-09 27.4 0.1 1 3 0.063 5.3 -1.4 0.0 156 175 132 151 112 156 0.77 # 20579 # 21541 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_24 - 321 Hydantoinase_A PF01968.13 290 9.3e-09 27.4 0.1 2 3 2.4e-06 0.0002 13.1 0.0 68 97 156 183 149 192 0.81 # 20579 # 21541 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_24 - 321 Hydantoinase_A PF01968.13 290 9.3e-09 27.4 0.1 3 3 8.3e-06 0.00069 11.4 0.0 214 265 242 297 198 307 0.78 # 20579 # 21541 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 1_2 - 763 AAA_16 PF13191.1 185 3.7e-06 19.7 0.0 1 1 6.3e-07 1.8e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 3139 # 5427 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_19 - 254 AAA_16 PF13191.1 185 9.3e-06 18.4 1.6 1 1 1.1e-06 3.1e-05 16.7 1.6 23 83 27 79 18 199 0.64 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_26 - 123 AAA_16 PF13191.1 185 0.0011 11.6 0.1 1 1 6.8e-05 0.0019 10.8 0.1 22 48 86 112 80 119 0.88 # 24840 # 25208 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_19 - 254 AAA_22 PF13401.1 131 0.00051 12.9 0.1 1 1 1.4e-05 0.0011 11.7 0.1 9 69 33 139 28 223 0.65 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 4_3 - 90 Ogr_Delta PF04606.7 47 0.0013 11.1 1.5 1 2 2.6e-05 0.0022 10.4 0.1 1 23 33 55 33 57 0.87 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 4_3 - 90 Ogr_Delta PF04606.7 47 0.0013 11.1 1.5 2 2 0.082 6.9 -0.8 0.1 3 12 71 80 71 84 0.80 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 2_19 - 254 AAA_29 PF13555.1 62 0.00012 14.3 0.0 1 1 3.6e-06 0.0003 13.0 0.0 17 40 23 45 17 57 0.82 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 3_1 - 216 LZ_Tnp_IS481 PF13011.1 85 4.1e-05 16.6 0.0 1 2 0.0052 0.44 3.7 0.0 27 55 20 48 11 52 0.84 # 655 # 1302 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 3_1 - 216 LZ_Tnp_IS481 PF13011.1 85 4.1e-05 16.6 0.0 2 2 3.5e-05 0.0029 10.6 0.0 15 54 102 141 99 166 0.87 # 655 # 1302 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 1_6 - 941 Orn_Arg_deC_N PF02784.11 251 0.00085 11.2 0.0 1 1 1e-05 0.00085 11.2 0.0 171 212 610 650 598 684 0.76 # 7699 # 10521 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.512 2_19 - 254 AAA_28 PF13521.1 163 0.00068 12.3 0.0 1 1 1.3e-05 0.0011 11.6 0.0 4 39 33 75 30 100 0.75 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_12 - 283 RNase_H_2 PF13482.1 164 3.2e-05 16.5 0.0 1 1 2.9e-06 0.00025 13.6 0.0 1 117 105 246 105 258 0.59 # 9564 # 10412 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 2_17 - 421 DDE_Tnp_1_4 PF13701.1 449 2.7e-27 87.6 3.5 1 2 0.0052 0.43 1.2 0.0 11 42 5 36 3 62 0.72 # 13729 # 14991 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 2_17 - 421 DDE_Tnp_1_4 PF13701.1 449 2.7e-27 87.6 3.5 2 2 1.5e-28 1.2e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 13729 # 14991 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 3_1 - 216 HTH_23 PF13384.1 50 5.2e-11 34.6 0.0 1 2 2e-05 0.00082 11.7 0.0 10 46 10 47 7 48 0.85 # 655 # 1302 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 3_1 - 216 HTH_23 PF13384.1 50 5.2e-11 34.6 0.0 2 2 3e-08 1.3e-06 20.7 0.0 10 46 104 141 99 145 0.83 # 655 # 1302 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 3_10 - 653 HTH_23 PF13384.1 50 4.1e-07 22.3 0.3 1 1 1.4e-07 6.1e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 6569 # 8527 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 2_19 - 254 CutC PF03932.9 202 9.7e-05 14.3 0.0 1 1 2e-06 0.00017 13.5 0.0 95 155 164 224 145 243 0.89 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 3_1 - 216 HTH_29 PF13551.1 112 6.1e-05 15.8 0.0 1 2 0.014 0.59 3.0 0.0 4 42 10 48 8 59 0.85 # 655 # 1302 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 3_1 - 216 HTH_29 PF13551.1 112 6.1e-05 15.8 0.0 2 2 8.3e-05 0.0035 10.2 0.0 15 41 115 141 101 164 0.84 # 655 # 1302 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 3_10 - 653 HTH_29 PF13551.1 112 0.00019 14.2 0.0 1 1 2.1e-05 0.00089 12.1 0.0 4 37 145 178 142 221 0.84 # 6569 # 8527 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 2_12 - 283 DNA_pol_A_exo1 PF01612.15 176 1.2e-05 17.5 0.0 1 1 4.6e-07 3.9e-05 15.8 0.0 20 95 102 196 85 211 0.79 # 9564 # 10412 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 3_3 - 524 DDE_Tnp_IS66 PF03050.9 271 7.4e-105 342.6 0.3 1 2 0.0087 0.73 1.6 2.4 159 205 35 84 14 125 0.53 # 1669 # 3240 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 3_3 - 524 DDE_Tnp_IS66 PF03050.9 271 7.4e-105 342.6 0.3 2 2 8.9e-107 7.4e-105 342.6 0.3 1 270 186 472 186 473 0.99 # 1669 # 3240 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 2_19 - 254 Arch_ATPase PF01637.13 234 0.00042 12.7 0.0 1 1 7e-06 0.00058 12.2 0.0 25 44 33 52 26 128 0.82 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_1 - 1046 PhoH PF02562.11 205 8.4e-05 14.5 0.0 1 1 2.5e-06 0.00021 13.2 0.0 3 60 967 1028 965 1039 0.85 # 2 # 3139 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593 2_19 - 254 AAA_5 PF07728.9 139 0.00032 13.1 0.2 1 2 1.6e-05 0.0013 11.1 0.1 4 23 33 52 30 126 0.76 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_19 - 254 AAA_5 PF07728.9 139 0.00032 13.1 0.2 2 2 0.058 4.9 -0.4 0.0 19 48 149 178 140 214 0.66 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_2 - 763 TrwB_AAD_bind PF10412.4 386 3.3e-150 492.6 0.0 1 1 9.8e-152 4.1e-150 492.3 0.0 2 386 172 561 171 561 0.99 # 3139 # 5427 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_20 - 877 TrwB_AAD_bind PF10412.4 386 1.2e-07 23.2 0.1 1 2 4.8e-08 2e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 19671 # 22301 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 877 TrwB_AAD_bind PF10412.4 386 1.2e-07 23.2 0.1 2 2 0.012 0.49 1.5 0.0 261 317 714 770 672 773 0.93 # 19671 # 22301 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_19 - 254 TIGR00611 TIGR00611 365 0.00019 12.9 0.0 1 2 0.00012 0.0098 7.3 0.0 27 66 32 72 18 108 0.64 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_19 - 254 TIGR00611 TIGR00611 365 0.00019 12.9 0.0 2 2 0.0014 0.12 3.8 0.0 306 340 160 193 127 213 0.79 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_25 - 228 Methyltransf_15 PF09445.5 164 0.00016 13.9 0.0 1 2 0.008 0.67 2.1 0.0 53 79 4 29 2 33 0.92 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_25 - 228 Methyltransf_15 PF09445.5 164 0.00016 13.9 0.0 2 2 4.3e-05 0.0037 9.5 0.0 3 31 166 194 164 208 0.86 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_19 - 254 DUF258 PF03193.11 161 0.00011 14.0 0.0 1 1 1.9e-06 0.00016 13.5 0.0 26 62 18 55 2 95 0.77 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_12 - 283 TIGR01406 TIGR01406 231 1.2e-16 53.3 0.0 1 1 3.1e-18 2.6e-16 52.2 0.0 4 168 106 266 104 280 0.75 # 9564 # 10412 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_20 - 877 DUF87 PF01935.12 229 2e-07 23.7 0.0 1 1 6.9e-09 5.8e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 19671 # 22301 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_1 - 216 HTH_28 PF13518.1 52 3.7e-09 29.2 0.0 1 2 0.00056 0.047 6.5 0.0 5 41 10 47 8 52 0.83 # 655 # 1302 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 3_1 - 216 HTH_28 PF13518.1 52 3.7e-09 29.2 0.0 2 2 2.7e-08 2.3e-06 20.3 0.0 3 41 102 141 100 145 0.82 # 655 # 1302 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 2_12 - 283 TIGR01298 TIGR01298 200 1.4e-05 17.2 1.1 1 1 1.5e-06 0.00012 14.2 1.1 98 189 172 267 97 275 0.77 # 9564 # 10412 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 2_19 - 254 Miro PF08477.8 119 0.00019 14.6 0.0 1 1 4.6e-06 0.00039 13.6 0.0 2 26 31 64 30 133 0.69 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_1 - 707 UvrD_C_2 PF13538.1 104 8.9e-08 25.0 3.5 1 2 0.0044 0.37 3.7 0.0 6 44 177 215 173 245 0.74 # 3 # 2123 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.609 2_1 - 707 UvrD_C_2 PF13538.1 104 8.9e-08 25.0 3.5 2 2 1.5e-08 1.3e-06 21.2 0.2 3 102 291 394 289 396 0.77 # 3 # 2123 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.609 2_24 - 321 StbA PF06406.6 318 2.1e-156 512.3 1.3 1 1 2.8e-158 2.4e-156 512.2 1.3 1 317 1 317 1 318 0.99 # 20579 # 21541 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 1_2 - 763 AAA_17 PF13207.1 121 0.00029 14.3 0.0 1 1 1.2e-05 0.001 12.5 0.0 3 27 189 217 187 262 0.68 # 3139 # 5427 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 4_3 - 90 DZR PF12773.2 50 0.00022 13.7 1.1 1 1 1e-05 0.00084 11.9 1.1 11 38 30 76 25 85 0.63 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 2_19 - 254 TIGR02211 TIGR02211 221 2e-34 111.3 0.1 1 1 1e-35 4.3e-34 110.3 0.1 18 219 15 213 5 215 0.82 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_11 - 94 TIGR02211 TIGR02211 221 0.00013 13.9 0.0 1 1 3.3e-06 0.00014 13.8 0.0 121 167 22 72 2 87 0.79 # 9237 # 9518 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 2_19 - 254 AAA_25 PF13481.1 194 0.00023 13.3 0.2 1 1 5.3e-06 0.00044 12.3 0.1 29 56 24 51 11 130 0.74 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_19 - 254 AAA_15 PF13175.1 415 0.00082 11.1 0.2 1 2 0.0024 0.2 3.2 0.0 27 42 33 48 14 87 0.86 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_19 - 254 AAA_15 PF13175.1 415 0.00082 11.1 0.2 2 2 0.0004 0.033 5.8 0.4 373 397 160 184 149 192 0.89 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_20 - 877 Pox_A32 PF04665.7 241 0.00062 11.7 0.1 1 1 2.3e-05 0.0019 10.1 0.0 7 38 474 505 470 520 0.85 # 19671 # 22301 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_19 - 254 AAA_14 PF13173.1 128 0.00076 12.1 0.0 1 2 4.6e-05 0.0038 9.8 0.0 4 48 30 72 27 93 0.69 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_19 - 254 AAA_14 PF13173.1 128 0.00076 12.1 0.0 2 2 0.059 4.9 -0.3 0.0 70 106 192 227 146 244 0.66 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_19 - 254 AAA_33 PF13671.1 143 0.0004 12.9 0.0 1 1 1.7e-05 0.0015 11.1 0.0 4 33 33 99 31 199 0.55 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_19 - 254 SbcCD_C PF13558.1 90 0.00029 13.4 0.0 1 1 3.6e-05 0.003 10.2 0.0 32 89 138 182 122 183 0.73 # 16579 # 17340 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_2 - 763 T4SS-DNA_transf PF02534.9 469 6.6e-10 30.7 0.0 1 1 4e-11 1.7e-09 29.4 0.0 264 361 382 476 198 500 0.82 # 3139 # 5427 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_20 - 877 T4SS-DNA_transf PF02534.9 469 0.00034 11.9 0.0 1 2 0.0047 0.2 2.8 0.0 105 182 534 605 471 624 0.82 # 19671 # 22301 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 877 T4SS-DNA_transf PF02534.9 469 0.00034 11.9 0.0 2 2 0.00028 0.012 6.8 0.0 319 378 712 770 662 772 0.89 # 19671 # 22301 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 4_3 - 90 Auto_anti-p27 PF06677.7 41 0.00036 13.0 0.1 1 1 7.4e-06 0.00062 12.2 0.1 17 29 31 43 30 49 0.82 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 2_14 - 495 DDE_Tnp_1_5 PF13737.1 112 2.2e-47 152.6 0.0 1 1 5.4e-49 4.5e-47 151.5 0.0 1 112 19 130 19 130 0.96 # 11040 # 12524 # -1 # ID=2_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.512 4_3 - 90 zinc_ribbon_2 PF13240.1 23 0.0006 12.0 0.8 1 2 7.2e-06 0.0006 12.0 0.8 14 23 32 41 30 43 0.69 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 4_3 - 90 zinc_ribbon_2 PF13240.1 23 0.0006 12.0 0.8 2 2 0.052 4.4 -0.3 0.1 3 8 71 76 71 79 0.71 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 2_12 - 283 RNase_T PF00929.19 164 3e-24 78.8 0.0 1 1 4.6e-26 3.8e-24 78.4 0.0 1 163 105 262 105 263 0.95 # 9564 # 10412 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_20 - 877 AAA_10 PF12846.2 304 1.6e-49 161.6 0.0 1 1 6.7e-51 2.8e-49 160.8 0.0 1 294 480 769 480 775 0.89 # 19671 # 22301 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_2 - 763 AAA_10 PF12846.2 304 1.3e-10 33.8 0.0 1 1 6.6e-11 2.8e-09 29.4 0.0 3 296 187 494 186 500 0.68 # 3139 # 5427 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_25 - 228 Methyltransf_11 PF08241.7 95 0.00031 13.9 0.1 1 3 0.061 5.1 0.4 0.0 55 65 15 25 2 28 0.73 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_25 - 228 Methyltransf_11 PF08241.7 95 0.00031 13.9 0.1 2 3 0.0053 0.44 3.8 0.0 79 93 54 68 42 70 0.85 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_25 - 228 Methyltransf_11 PF08241.7 95 0.00031 13.9 0.1 3 3 0.0014 0.12 5.7 0.0 5 54 172 220 168 226 0.82 # 22057 # 22740 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 4_3 - 90 UPF0547 PF10571.4 26 0.00023 13.5 1.0 1 1 4.7e-06 0.0004 12.8 0.2 1 10 32 41 32 48 0.90 # 2144 # 2413 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 1_1 - 1046 AAA_11 PF13086.1 236 9.2e-05 14.7 0.0 1 1 2.2e-06 0.00019 13.7 0.0 2 70 969 1034 968 1043 0.86 # 2 # 3139 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593 3_12 - 174 SSB PF00436.20 104 2.3e-41 132.6 0.3 1 1 4.1e-43 3.4e-41 132.0 0.3 1 101 6 109 6 112 0.96 # 8880 # 9401 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/82b0baec-7d97-4e1b-abb6-5d06d2abd2b7 # Target file: checkm_output/bins/pm874/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm874/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/82b0baec-7d97-4e1b-abb6-5d06d2abd2b7 checkm_output/bins/pm874/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:16:57 2017 # [ok]