# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 134 HTH_IclR PF09339.5 52 1.8e-06 16.2 0.4 1 1 6.9e-07 3.4e-06 15.4 0.4 19 40 4 25 1 26 0.90 # 1881 # 2282 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.468 1_3 - 134 MerR_1 PF13411.1 69 2.6e-05 12.7 0.3 1 1 1.7e-05 8.3e-05 11.1 0.0 2 30 5 33 4 42 0.86 # 1881 # 2282 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.468 1_3 - 134 HTH_23 PF13384.1 50 5.7e-06 14.7 0.1 1 1 2.6e-06 1.3e-05 13.6 0.1 18 40 4 26 1 26 0.91 # 1881 # 2282 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.468 1_3 - 134 HTH_28 PF13518.1 52 1.7e-05 13.5 0.1 1 1 1.1e-05 5.7e-05 11.9 0.1 13 35 4 26 2 28 0.92 # 1881 # 2282 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.468 1_3 - 134 HTH_24 PF13412.1 48 3.3e-05 12.0 0.3 1 1 1.3e-05 6.4e-05 11.1 0.3 16 39 2 25 2 26 0.94 # 1881 # 2282 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.468 1_3 - 134 MerR PF00376.18 38 8.1e-06 14.1 0.0 1 1 4.9e-06 2.5e-05 12.6 0.0 1 23 5 27 5 34 0.92 # 1881 # 2282 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.468 1_3 - 134 HTH_17 PF12728.2 51 4.5e-09 25.3 0.0 1 1 1.6e-09 7.8e-09 24.5 0.0 3 44 5 47 4 50 0.79 # 1881 # 2282 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.468 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7a898cf7-6a06-43fd-87b6-7b42b7472038 # Target file: checkm_output/bins/pm861/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm861/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7a898cf7-6a06-43fd-87b6-7b42b7472038 checkm_output/bins/pm861/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:16:34 2017 # [ok]