# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_92 - 228 Cons_hypoth95 PF03602.10 183 2.2e-05 16.9 0.0 1 2 0.00065 0.068 5.5 0.0 114 146 20 54 10 82 0.65 # 76007 # 76690 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_92 - 228 Cons_hypoth95 PF03602.10 183 2.2e-05 16.9 0.0 2 2 4e-05 0.0042 9.4 0.0 41 62 162 183 145 218 0.78 # 76007 # 76690 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_27 - 383 ABC_tran PF00005.22 137 2.5e-05 17.6 0.1 1 1 1.3e-06 6.7e-05 16.2 0.0 15 34 161 180 150 197 0.87 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_13 - 503 ABC_tran PF00005.22 137 0.00051 13.3 0.0 1 1 1.7e-05 0.0009 12.5 0.0 13 37 231 255 226 364 0.91 # 9304 # 10812 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_101 - 197 TIGR01173 TIGR01173 452 2.9e-10 32.1 1.7 1 2 0.00011 0.011 7.1 0.1 247 281 98 132 68 140 0.73 # 82701 # 83291 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.398 1_101 - 197 TIGR01173 TIGR01173 452 2.9e-10 32.1 1.7 2 2 4e-10 4.1e-08 25.0 0.1 392 443 140 192 134 196 0.91 # 82701 # 83291 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.398 1_92 - 228 TIGR00095 TIGR00095 194 0.00031 13.1 0.0 1 2 0.0015 0.15 4.3 0.0 124 138 20 34 7 79 0.74 # 76007 # 76690 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_92 - 228 TIGR00095 TIGR00095 194 0.00031 13.1 0.0 2 2 0.00024 0.025 6.8 0.0 53 86 164 199 155 218 0.77 # 76007 # 76690 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_97 - 424 HHH_5 PF14520.1 60 0.00034 13.8 0.0 1 1 8.6e-06 0.0009 12.4 0.0 9 37 184 212 172 225 0.92 # 79381 # 80652 # 1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_27 - 383 Sigma54_activat PF00158.21 168 0.00067 12.1 0.0 1 1 1.2e-05 0.0012 11.2 0.0 26 46 161 181 145 194 0.82 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_27 - 383 FtsK_SpoIIIE PF01580.13 205 0.00064 12.2 0.0 1 1 1e-05 0.0011 11.4 0.0 40 63 159 182 122 227 0.87 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_98 - 209 MobB PF03205.9 140 5.9e-05 15.8 0.1 1 1 1.6e-06 0.00017 14.3 0.0 10 42 11 41 1 46 0.79 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_59 - 227 HTH_39 PF14090.1 70 2.3e-07 23.2 0.0 1 1 6.4e-09 6.7e-07 21.7 0.0 8 67 167 226 162 226 0.91 # 49185 # 49865 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.535 1_79 - 199 TilS_C PF11734.3 74 0.00013 14.2 0.0 1 1 3.8e-06 0.0004 12.6 0.0 29 46 7 24 6 28 0.87 # 67632 # 68228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_13 - 503 AAA_19 PF13245.1 76 9.6e-05 15.1 0.7 1 1 4.3e-06 0.00022 13.9 0.1 5 36 223 255 219 272 0.71 # 9304 # 10812 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_98 - 209 AAA_19 PF13245.1 76 0.0003 13.5 0.1 1 2 0.00019 0.01 8.6 0.0 20 48 11 35 9 44 0.84 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 AAA_19 PF13245.1 76 0.0003 13.5 0.1 2 2 0.021 1.1 2.1 0.0 42 63 135 158 118 184 0.76 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 CbiA PF01656.18 195 1.8e-22 72.6 0.0 1 1 3.1e-24 3.2e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_92 - 228 MethyltransfD12 PF02086.10 260 0.00032 13.1 0.0 1 2 0.011 1.1 1.5 0.0 174 188 17 31 8 90 0.84 # 76007 # 76690 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_92 - 228 MethyltransfD12 PF02086.10 260 0.00032 13.1 0.0 2 2 4e-05 0.0042 9.5 0.0 20 46 163 189 148 197 0.78 # 76007 # 76690 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_98 - 209 YhjQ PF06564.7 244 2.4e-05 16.7 0.3 1 2 1.8e-06 0.00019 13.8 0.3 4 38 3 37 1 50 0.89 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 YhjQ PF06564.7 244 2.4e-05 16.7 0.3 2 2 0.029 3 0.0 0.0 108 144 69 103 44 113 0.78 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_27 - 383 AAA_23 PF13476.1 202 2.8e-05 17.5 0.1 1 1 1.1e-06 5.9e-05 16.4 0.0 20 40 158 178 144 205 0.85 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_13 - 503 AAA_23 PF13476.1 202 0.00037 13.8 0.1 1 1 1.3e-05 0.00068 12.9 0.1 20 37 230 247 218 264 0.90 # 9304 # 10812 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_92 - 228 Methyltransf_26 PF13659.1 117 1.8e-11 37.1 0.0 1 2 4.2e-07 4.4e-05 16.5 0.0 57 114 7 71 2 74 0.72 # 76007 # 76690 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_92 - 228 Methyltransf_26 PF13659.1 117 1.8e-11 37.1 0.0 2 2 9.7e-08 1e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 76007 # 76690 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_13 - 503 AAA_30 PF13604.1 196 2.7e-07 23.3 0.0 1 1 4.9e-09 5.1e-07 22.4 0.0 2 45 213 256 212 263 0.91 # 9304 # 10812 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_79 - 199 TIGR02433 TIGR02433 47 0.0008 11.6 0.0 1 1 7.7e-06 0.0008 11.6 0.0 30 45 8 23 7 25 0.91 # 67632 # 68228 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_64 - 767 TraG-D_C PF12696.2 128 2.1e-08 27.1 4.1 1 2 2.2e-10 2.3e-08 27.0 0.2 1 86 437 522 437 558 0.83 # 53667 # 55967 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_64 - 767 TraG-D_C PF12696.2 128 2.1e-08 27.1 4.1 2 2 0.064 6.6 -0.4 0.0 71 95 622 645 614 670 0.60 # 53667 # 55967 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_98 - 209 MipZ PF09140.6 261 1.9e-21 69.2 0.5 1 2 1.2e-12 1.2e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 MipZ PF09140.6 261 1.9e-21 69.2 0.5 2 2 1.6e-12 1.6e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_92 - 228 UPF0020 PF01170.13 180 1.8e-05 17.3 0.0 1 2 0.00039 0.041 6.4 0.0 104 123 18 37 5 89 0.71 # 76007 # 76690 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_92 - 228 UPF0020 PF01170.13 180 1.8e-05 17.3 0.0 2 2 6.2e-05 0.0064 9.0 0.0 28 54 163 189 158 221 0.67 # 76007 # 76690 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_40 - 421 DDE_Tnp_1 PF01609.16 213 8.3e-35 113.2 0.2 1 1 1.7e-36 1.8e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 33460 # 34722 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_74 - 306 Trp_repressor PF01371.14 88 0.0001 15.2 1.8 1 2 0.0003 0.031 7.2 0.4 3 39 195 237 193 267 0.70 # 64164 # 65081 # -1 # ID=1_74;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.522 1_74 - 306 Trp_repressor PF01371.14 88 0.0001 15.2 1.8 2 2 0.00046 0.048 6.6 0.0 35 65 269 299 264 304 0.90 # 64164 # 65081 # -1 # ID=1_74;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.522 1_101 - 197 TIGR00965 TIGR00965 271 0.00028 13.0 2.9 1 1 3.5e-06 0.00037 12.6 2.9 121 204 82 169 65 184 0.82 # 82701 # 83291 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.398 1_82 - 653 KorB PF08535.5 93 2.3e-05 17.5 0.0 1 1 6e-07 6.2e-05 16.1 0.0 2 43 152 193 151 204 0.93 # 69430 # 71388 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_98 - 209 TIGR00064 TIGR00064 279 0.00024 13.0 0.5 1 2 0.00073 0.076 4.8 0.1 89 116 11 38 1 45 0.88 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 TIGR00064 TIGR00064 279 0.00024 13.0 0.5 2 2 0.00024 0.025 6.4 0.0 153 175 68 90 60 99 0.82 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_92 - 228 N6_N4_Mtase PF01555.13 231 7.9e-37 119.9 0.0 1 1 3.4e-36 3.5e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 76007 # 76690 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_27 - 383 AAA_16 PF13191.1 185 9.4e-06 18.7 0.1 1 1 7e-07 3.6e-05 16.7 0.0 25 57 158 193 148 326 0.80 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_13 - 503 AAA_16 PF13191.1 185 0.00013 15.0 0.0 1 1 5.1e-06 0.00026 13.9 0.0 21 51 226 256 215 338 0.85 # 9304 # 10812 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_13 - 503 AAA_22 PF13401.1 131 6.1e-06 19.4 0.0 1 1 2.3e-07 1.2e-05 18.4 0.0 4 49 229 281 226 349 0.82 # 9304 # 10812 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_27 - 383 AAA_22 PF13401.1 131 8.3e-06 18.9 0.0 1 1 3.1e-07 1.6e-05 18.0 0.0 3 44 156 194 153 233 0.76 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_27 - 383 TIGR00362 TIGR00362 437 0.00092 10.9 0.0 1 1 1.5e-05 0.0016 10.2 0.0 141 171 161 191 155 199 0.93 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_70 - 283 Methyltransf_27 PF13708.1 194 6e-67 217.9 0.0 1 1 8e-69 8.3e-67 217.4 0.0 2 194 85 278 84 278 0.96 # 62234 # 63082 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_27 - 383 AAA_29 PF13555.1 62 2.2e-05 16.9 0.0 1 1 1.1e-06 5.6e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_13 - 503 AAA_29 PF13555.1 62 2.9e-05 16.6 0.0 1 1 1.3e-06 7e-05 15.3 0.0 20 40 227 246 218 260 0.84 # 9304 # 10812 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_98 - 209 SRP54 PF00448.17 196 2.5e-07 23.2 0.1 1 1 1.5e-08 1.6e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_72 - 84 HTH_3 PF01381.17 55 2.9e-05 16.9 0.0 1 2 1e-06 0.00011 15.1 0.0 1 34 6 39 6 45 0.90 # 63662 # 63913 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_72 - 84 HTH_3 PF01381.17 55 2.9e-05 16.9 0.0 2 2 0.083 8.6 -0.7 0.0 39 52 67 80 65 83 0.66 # 63662 # 63913 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_40 - 421 DDE_Tnp_1_4 PF13701.1 449 3.4e-27 87.6 3.5 1 2 0.0052 0.54 1.2 0.0 11 42 5 36 3 62 0.72 # 33460 # 34722 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_40 - 421 DDE_Tnp_1_4 PF13701.1 449 3.4e-27 87.6 3.5 2 2 1.5e-28 1.5e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 33460 # 34722 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_82 - 653 HTH_23 PF13384.1 50 7.1e-07 21.8 0.2 1 1 1.4e-07 7.5e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 69430 # 71388 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_72 - 84 HTH_23 PF13384.1 50 3.7e-05 16.3 0.3 1 2 7e-06 0.00037 13.2 0.1 17 33 14 30 6 38 0.86 # 63662 # 63913 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_72 - 84 HTH_23 PF13384.1 50 3.7e-05 16.3 0.3 2 2 0.048 2.5 1.0 0.0 5 22 63 82 59 83 0.75 # 63662 # 63913 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_98 - 209 Fer4_NifH PF00142.13 273 7.7e-05 14.9 0.2 1 1 2.3e-06 0.00024 13.3 0.0 8 38 9 39 2 46 0.89 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_74 - 306 HTH_7 PF02796.10 45 0.00041 13.2 0.0 1 1 9e-06 0.00093 12.1 0.0 9 41 271 303 265 305 0.85 # 64164 # 65081 # -1 # ID=1_74;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.522 1_67 - 176 RepL PF05732.6 165 5.4e-09 28.4 1.6 1 1 2e-10 2.1e-08 26.5 1.6 13 132 34 168 21 173 0.79 # 60572 # 61099 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.339 1_72 - 84 HTH_19 PF12844.2 64 8.2e-05 15.6 0.0 1 1 1.2e-06 0.00012 15.1 0.0 7 53 9 56 5 67 0.87 # 63662 # 63913 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_72 - 84 DUF1870 PF08965.5 118 0.00031 13.4 1.2 1 1 3.7e-06 0.00039 13.1 1.2 1 75 1 78 1 81 0.69 # 63662 # 63913 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_27 - 383 NB-ARC PF00931.17 287 0.00056 11.7 0.0 1 1 1.1e-05 0.0011 10.8 0.0 18 49 156 185 145 193 0.79 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_82 - 653 HTH_29 PF13551.1 112 0.00029 14.0 0.0 1 1 2e-05 0.0011 12.2 0.0 4 37 145 178 142 234 0.85 # 69430 # 71388 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_74 - 306 HTH_29 PF13551.1 112 0.00056 13.1 0.1 1 2 0.0029 0.15 5.2 0.0 17 59 232 274 224 280 0.88 # 64164 # 65081 # -1 # ID=1_74;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.522 1_74 - 306 HTH_29 PF13551.1 112 0.00056 13.1 0.1 2 2 0.0025 0.13 5.4 0.0 8 29 280 300 275 305 0.82 # 64164 # 65081 # -1 # ID=1_74;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.522 1_73 - 53 UBA PF00627.26 37 0.0007 12.5 0.0 1 1 1.1e-05 0.0012 11.7 0.0 6 22 20 36 15 36 0.87 # 63944 # 64102 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.528 1_27 - 383 PhoH PF02562.11 205 0.00013 14.2 0.0 1 1 2.3e-06 0.00024 13.3 0.0 15 60 153 198 141 230 0.86 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_64 - 767 TrwB_AAD_bind PF10412.4 386 5.9e-06 18.0 0.2 1 2 0.00041 0.043 5.3 0.0 11 32 132 153 126 164 0.80 # 53667 # 55967 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_64 - 767 TrwB_AAD_bind PF10412.4 386 5.9e-06 18.0 0.2 2 2 1.4e-05 0.0015 10.1 0.1 260 332 452 525 425 578 0.76 # 53667 # 55967 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_98 - 209 TIGR01968 TIGR01968 261 1.7e-11 36.5 0.8 1 2 6.4e-11 6.7e-09 28.1 0.5 3 39 2 38 1 42 0.97 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 TIGR01968 TIGR01968 261 1.7e-11 36.5 0.8 2 2 0.00018 0.019 6.9 0.0 100 135 65 100 60 149 0.83 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_27 - 383 AAA_18 PF13238.1 129 6.8e-06 19.4 0.0 1 1 2.3e-07 1.2e-05 18.6 0.0 2 42 161 197 161 242 0.78 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_13 - 503 AAA_18 PF13238.1 129 0.00075 12.8 0.4 1 1 3.4e-05 0.0018 11.6 0.2 1 18 232 249 232 267 0.87 # 9304 # 10812 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_97 - 424 IMS_HHH PF11798.3 32 4.9e-09 28.9 0.3 1 1 1.3e-10 1.4e-08 27.5 0.3 3 32 172 201 170 201 0.93 # 79381 # 80652 # 1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_27 - 383 DUF87 PF01935.12 229 3.7e-05 16.6 0.0 1 1 1.3e-06 6.7e-05 15.7 0.0 28 51 162 186 161 192 0.83 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_64 - 767 DUF87 PF01935.12 229 0.00097 11.9 0.1 1 2 0.00046 0.024 7.4 0.0 16 40 130 153 120 168 0.80 # 53667 # 55967 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_64 - 767 DUF87 PF01935.12 229 0.00097 11.9 0.1 2 2 0.022 1.2 1.8 0.1 112 174 641 702 619 734 0.67 # 53667 # 55967 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_72 - 84 HTH_31 PF13560.1 64 6.6e-07 22.5 2.0 1 2 1e-08 1e-06 21.9 1.2 3 43 3 43 2 57 0.86 # 63662 # 63913 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_72 - 84 HTH_31 PF13560.1 64 6.6e-07 22.5 2.0 2 2 0.1 10 -0.6 0.0 17 34 65 72 44 82 0.58 # 63662 # 63913 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_13 - 503 T2SE PF00437.15 272 1.9e-37 121.6 0.0 1 1 6.2e-39 3.2e-37 120.8 0.0 66 269 161 378 142 380 0.86 # 9304 # 10812 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_27 - 383 T2SE PF00437.15 272 3.5e-35 114.1 0.0 1 1 1e-36 5.2e-35 113.6 0.0 109 261 142 292 23 309 0.78 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_27 - 383 NACHT PF05729.7 166 0.001 11.7 0.0 1 1 1.8e-05 0.0019 10.8 0.0 4 27 161 184 159 193 0.84 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_98 - 209 AAA_17 PF13207.1 121 1.6e-05 18.7 0.0 1 1 1.2e-06 4.3e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_27 - 383 AAA_17 PF13207.1 121 0.00012 15.9 0.0 1 1 8.3e-06 0.00029 14.7 0.0 3 39 161 200 161 251 0.72 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_13 - 503 AAA_17 PF13207.1 121 0.00015 15.5 0.2 1 1 1.3e-05 0.00046 14.0 0.1 1 32 231 264 231 353 0.79 # 9304 # 10812 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_27 - 383 AAA_25 PF13481.1 194 5.1e-07 22.2 0.0 1 1 1.6e-08 8.1e-07 21.6 0.0 21 73 146 196 127 236 0.80 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_98 - 209 AAA_25 PF13481.1 194 0.00012 14.4 0.1 1 1 6.2e-06 0.00032 13.1 0.0 42 87 10 44 3 90 0.78 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 VirC1 PF07015.6 231 3.5e-09 29.0 0.0 1 1 7.1e-11 7.4e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_27 - 383 AAA_33 PF13671.1 143 0.00051 12.9 0.1 1 1 1.8e-05 0.0018 11.1 0.0 3 21 161 179 159 194 0.90 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_27 - 383 RNA_helicase PF00910.17 107 4.2e-05 16.7 0.0 1 1 8.3e-07 8.6e-05 15.7 0.0 2 28 161 187 160 202 0.83 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_1 - 215 TIGR00922 TIGR00922 172 0.00029 13.4 0.0 1 1 3.3e-06 0.00035 13.1 0.0 54 104 106 156 57 177 0.87 # 1 # 645 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 1_47 - 1015 AAA_10 PF12846.2 304 1.9e-31 102.5 0.0 1 1 1.4e-32 3.7e-31 101.6 0.0 8 303 502 898 498 899 0.89 # 38192 # 41236 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.567 1_64 - 767 AAA_10 PF12846.2 304 1.3e-06 21.0 0.1 1 1 1.1e-07 2.7e-06 19.9 0.1 2 292 137 506 136 516 0.72 # 53667 # 55967 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_27 - 383 AAA_10 PF12846.2 304 5.4e-06 18.9 0.0 1 2 3.8e-06 9.8e-05 14.8 0.0 3 27 159 183 157 197 0.87 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_27 - 383 AAA_10 PF12846.2 304 5.4e-06 18.9 0.0 2 2 0.036 0.95 1.7 0.0 193 248 290 348 259 352 0.76 # 21446 # 22594 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_98 - 209 AAA_10 PF12846.2 304 0.00016 14.1 0.0 1 1 1e-05 0.00026 13.4 0.0 11 39 11 39 3 66 0.90 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 ArsA_ATPase PF02374.10 305 4.5e-08 25.4 0.9 1 3 1.2e-09 1.2e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 ArsA_ATPase PF02374.10 305 4.5e-08 25.4 0.9 2 3 0.053 5.6 -1.2 0.0 121 135 69 85 47 86 0.75 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 ArsA_ATPase PF02374.10 305 4.5e-08 25.4 0.9 3 3 0.075 7.8 -1.7 0.0 205 234 132 161 118 202 0.65 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 AAA_31 PF13614.1 157 4.5e-06 19.6 0.0 1 2 2.5e-07 2.6e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_98 - 209 AAA_31 PF13614.1 157 4.5e-06 19.6 0.0 2 2 0.055 5.7 -0.2 0.0 109 127 68 86 62 113 0.68 # 80864 # 81490 # 1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_74 - 306 Yae1_N PF09811.4 39 0.0016 11.0 2.9 1 1 2.6e-05 0.0027 10.3 2.9 3 18 253 268 252 271 0.83 # 64164 # 65081 # -1 # ID=1_74;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.522 1_84 - 176 SSB PF00436.20 104 6.3e-41 131.5 0.3 1 1 7.9e-43 8.2e-41 131.1 0.3 1 101 6 109 6 112 0.96 # 71743 # 72270 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/60282548-7d40-43de-8ffa-a04ecb8f016b # Target file: checkm_output/bins/pm846/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm846/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/60282548-7d40-43de-8ffa-a04ecb8f016b checkm_output/bins/pm846/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:16:14 2017 # [ok]