# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_11 - 228 Cons_hypoth95 PF03602.10 183 5.6e-06 17.9 0.0 1 2 0.00032 0.017 6.5 0.0 113 146 19 54 5 81 0.66 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 Cons_hypoth95 PF03602.10 183 5.6e-06 17.9 0.0 2 2 4e-05 0.0022 9.4 0.0 41 62 162 183 145 218 0.78 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_12 - 92 Zn_Tnp_IS1 PF03811.8 36 4.3e-24 75.8 4.5 1 1 1.6e-25 8.6e-24 74.9 4.5 1 36 1 36 1 36 0.99 # 13678 # 13953 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_9 - 186 HTH_IclR PF09339.5 52 6.8e-06 17.7 0.2 1 1 9.2e-07 2.5e-05 15.9 0.0 15 40 155 180 151 181 0.85 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_2 - 208 HTH_IclR PF09339.5 52 8.5e-05 14.2 0.1 1 1 6.1e-06 0.00016 13.3 0.1 7 48 8 48 7 51 0.91 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 2_9 - 186 HTH_22 PF13309.1 64 0.00013 13.8 1.2 1 1 1.2e-05 0.00064 11.6 0.1 35 63 156 179 143 180 0.76 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 3_11 - 228 TIGR00095 TIGR00095 194 8.8e-05 13.9 0.0 1 2 0.00077 0.042 5.2 0.0 124 138 20 34 3 79 0.72 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 TIGR00095 TIGR00095 194 8.8e-05 13.9 0.0 2 2 0.00024 0.013 6.8 0.0 53 86 164 199 155 218 0.77 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_2 - 188 N6_Mtase PF02384.11 311 8.2e-05 13.8 0.0 1 2 1.6e-05 0.00088 10.4 0.0 28 64 32 68 21 83 0.87 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_2 - 188 N6_Mtase PF02384.11 311 8.2e-05 13.8 0.0 2 2 0.018 0.98 0.4 0.0 127 137 114 124 103 134 0.82 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 2_9 - 186 HTH_40 PF14493.1 91 0.00035 12.9 0.6 1 1 2.1e-05 0.0012 11.2 0.1 7 32 152 177 147 183 0.89 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_9 - 186 HTH_38 PF13936.1 44 3.2e-06 18.7 0.0 1 1 5.9e-08 3.2e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_8 - 730 MobB PF03205.9 140 0.00051 11.8 0.0 1 1 2.1e-05 0.0011 10.7 0.0 7 34 192 219 188 225 0.89 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 2_2 - 208 HTH_34 PF13601.1 80 6.9e-09 27.8 0.4 1 2 4.2e-08 2.3e-06 19.7 0.0 2 49 6 53 5 60 0.91 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 2_2 - 208 HTH_34 PF13601.1 80 6.9e-09 27.8 0.4 2 2 0.00072 0.039 6.1 0.1 59 74 191 206 184 207 0.90 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 2_2 - 208 MarR PF01047.17 59 9.2e-05 14.2 0.1 1 1 8.2e-06 0.00044 12.0 0.1 6 48 7 49 4 52 0.88 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 2_5 - 198 TetR_N PF00440.18 47 7.1e-19 59.3 0.0 1 1 4.3e-20 1.1e-18 58.7 0.0 2 47 19 64 18 64 0.96 # 2831 # 3424 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.328 2_3 - 208 TetR_N PF00440.18 47 1.8e-18 58.0 0.0 1 2 1.7e-18 4.6e-17 53.5 0.0 2 47 10 55 9 55 0.97 # 808 # 1431 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 2_3 - 208 TetR_N PF00440.18 47 1.8e-18 58.0 0.0 2 2 0.016 0.43 2.4 0.0 1 15 169 183 169 185 0.86 # 808 # 1431 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 1_7 - 1757 AAA_19 PF13245.1 76 4.2e-07 21.7 1.7 1 1 3.1e-08 1.7e-06 19.8 0.4 7 71 981 1042 974 1048 0.71 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 3_11 - 228 MethyltransfD12 PF02086.10 260 0.0003 12.3 0.0 1 2 0.022 1.2 0.5 0.0 178 188 21 31 14 91 0.83 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 MethyltransfD12 PF02086.10 260 0.0003 12.3 0.0 2 2 4e-05 0.0022 9.5 0.0 20 46 163 189 148 197 0.78 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 5_1 - 235 rve PF00665.21 120 1.8e-13 42.7 0.1 1 2 0.015 0.8 1.9 0.0 78 102 27 49 6 54 0.84 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_1 - 235 rve PF00665.21 120 1.8e-13 42.7 0.1 2 2 6.1e-14 3.3e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_2 - 188 Methyltransf_26 PF13659.1 117 1.4e-14 46.2 0.0 1 1 9e-16 2.4e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_11 - 228 Methyltransf_26 PF13659.1 117 7.8e-13 40.6 0.1 1 2 7e-08 1.9e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 Methyltransf_26 PF13659.1 117 7.8e-13 40.6 0.1 2 2 1.9e-07 5.2e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_7 - 1757 AAA_30 PF13604.1 196 4e-43 139.3 15.6 1 3 0.047 2.6 -0.4 0.0 41 86 223 269 219 280 0.82 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_7 - 1757 AAA_30 PF13604.1 196 4e-43 139.3 15.6 2 3 9.4e-06 0.00051 11.7 3.8 7 147 420 552 416 562 0.84 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_7 - 1757 AAA_30 PF13604.1 196 4e-43 139.3 15.6 3 3 1.2e-42 6.5e-41 132.1 2.3 1 186 968 1156 968 1160 0.94 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 5_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00013 13.9 0.3 1 1 5.4e-06 0.00029 12.9 0.3 4 51 6 58 4 63 0.79 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_8 - 730 TraG-D_C PF12696.2 128 3.6e-20 64.2 0.0 1 1 1.4e-21 7.6e-20 63.1 0.0 1 127 419 541 419 542 0.86 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 5_1 - 235 DDE_3 PF13358.1 146 0.00037 12.3 0.0 1 1 2.1e-05 0.0011 10.7 0.0 32 90 82 141 59 146 0.87 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_11 - 228 UPF0020 PF01170.13 180 3.8e-06 18.6 0.0 1 2 0.00016 0.0088 7.6 0.0 104 119 18 33 7 88 0.73 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 UPF0020 PF01170.13 180 3.8e-06 18.6 0.0 2 2 6.2e-05 0.0033 9.0 0.0 28 54 163 189 158 221 0.67 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_2 - 188 Methyltransf_25 PF13649.1 101 6.1e-05 15.4 0.0 1 1 1.7e-06 9e-05 14.9 0.0 1 101 54 142 54 142 0.81 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 2_7 - 198 DDE_Tnp_1 PF01609.16 213 5.5e-16 50.7 0.1 1 1 1.5e-17 8e-16 50.2 0.1 126 210 33 123 5 126 0.85 # 3938 # 4531 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.449 4_4 - 653 KorB PF08535.5 93 1e-05 17.7 0.0 1 1 6e-07 3.2e-05 16.1 0.0 2 43 152 193 151 204 0.93 # 2148 # 4106 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 2_2 - 208 HTH_27 PF13463.1 68 2.8e-05 16.5 0.3 1 1 2.3e-06 0.00012 14.4 0.0 8 48 9 48 5 61 0.85 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 3_11 - 228 N6_N4_Mtase PF01555.13 231 3.5e-37 120.1 0.0 1 2 1.3e-15 7e-14 43.8 0.0 1 114 21 124 21 133 0.89 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 N6_N4_Mtase PF01555.13 231 3.5e-37 120.1 0.0 2 2 5.4e-25 2.9e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_12 - 321 Hydantoinase_A PF01968.13 290 8e-09 26.9 0.2 1 3 0.062 3.3 -1.3 0.0 154 175 130 151 109 155 0.77 # 7941 # 8903 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 3_12 - 321 Hydantoinase_A PF01968.13 290 8e-09 26.9 0.2 2 3 3.2e-06 0.00017 12.7 0.0 68 97 156 183 149 192 0.81 # 7941 # 8903 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 3_12 - 321 Hydantoinase_A PF01968.13 290 8e-09 26.9 0.2 3 3 8.3e-06 0.00045 11.4 0.0 214 265 242 297 198 307 0.78 # 7941 # 8903 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 1_8 - 730 AAA_16 PF13191.1 185 2.4e-05 16.4 0.0 1 1 2.1e-06 0.00011 14.2 0.0 21 57 182 219 179 264 0.81 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 139 HTH_AraC PF00165.18 42 5.7e-22 69.1 2.3 1 2 2.6e-12 1.4e-10 32.8 0.0 1 42 37 78 37 78 0.97 # 3512 # 3928 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.360 2_6 - 139 HTH_AraC PF00165.18 42 5.7e-22 69.1 2.3 2 2 3.6e-13 1.9e-11 35.6 1.1 2 42 90 128 89 128 0.95 # 3512 # 3928 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.360 2_9 - 186 HTH_Tnp_IS630 PF01710.11 120 5e-05 15.0 0.0 1 1 1.9e-06 0.00011 14.0 0.0 8 44 148 184 145 185 0.90 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_8 - 730 AAA_28 PF13521.1 163 0.00022 13.3 0.0 1 1 1.1e-05 0.00057 11.9 0.0 2 37 188 228 187 252 0.78 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 5_1 - 235 HTH_32 PF13565.1 77 7e-07 22.1 0.2 1 1 5.6e-08 3e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_4 - 653 HTH_23 PF13384.1 50 7.2e-07 20.9 0.0 1 1 3.6e-07 3.9e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 2148 # 4106 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 5_1 - 235 HTH_23 PF13384.1 50 3.3e-06 18.8 0.7 1 2 0.079 0.85 1.6 0.0 7 27 11 35 7 36 0.69 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_1 - 235 HTH_23 PF13384.1 50 3.3e-06 18.8 0.7 2 2 9.3e-06 0.0001 14.0 0.1 28 42 41 55 40 62 0.87 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_12 - 92 HTH_23 PF13384.1 50 1.2e-05 17.0 0.0 1 1 1.8e-06 2e-05 16.3 0.0 7 40 53 86 51 90 0.93 # 13678 # 13953 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_9 - 186 HTH_23 PF13384.1 50 2.4e-05 16.0 0.3 1 1 2.2e-06 2.4e-05 16.0 0.3 5 39 146 180 142 184 0.87 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_3 - 208 HTH_23 PF13384.1 50 0.00013 13.6 0.0 1 1 3.3e-05 0.00035 12.3 0.0 10 39 13 47 11 56 0.81 # 808 # 1431 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 2_9 - 186 HTH_7 PF02796.10 45 9.9e-14 43.1 0.5 1 1 5.1e-15 2.8e-13 41.6 0.1 1 44 141 181 141 182 0.97 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_12 - 92 zinc_ribbon_4 PF13717.1 36 3.1e-05 15.7 4.1 1 1 1.6e-06 8.4e-05 14.3 4.1 3 35 6 39 5 40 0.86 # 13678 # 13953 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_9 - 186 HTH_29 PF13551.1 112 5.8e-05 15.3 0.6 1 2 0.049 1.3 1.3 0.2 24 46 114 136 88 153 0.67 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_9 - 186 HTH_29 PF13551.1 112 5.8e-05 15.3 0.6 2 2 2e-05 0.00055 12.2 0.0 4 35 151 181 148 184 0.90 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 4_4 - 653 HTH_29 PF13551.1 112 0.00015 14.0 0.0 1 1 2e-05 0.00055 12.2 0.0 4 37 145 178 142 234 0.85 # 2148 # 4106 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.590 3_2 - 188 Met_10 PF02475.11 200 0.00028 12.5 0.0 1 1 7e-06 0.00038 12.1 0.0 99 189 48 132 38 145 0.78 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 5_1 - 235 DDE_Tnp_IS66 PF03050.9 271 1.3e-12 39.5 0.3 1 1 3e-14 1.6e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_2 - 188 Methyltransf_31 PF13847.1 152 3.3e-07 22.0 0.0 1 1 7.6e-09 4.1e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_8 - 730 TrwB_AAD_bind PF10412.4 386 5.7e-149 487.9 0.0 1 1 1.3e-150 7e-149 487.6 0.0 2 386 172 561 171 561 0.99 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 3_11 - 228 Methyltransf_15 PF09445.5 164 0.00015 13.3 0.0 1 2 0.012 0.67 1.5 0.0 53 79 4 29 2 33 0.91 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 Methyltransf_15 PF09445.5 164 0.00015 13.3 0.0 2 2 4.2e-05 0.0023 9.5 0.0 3 31 166 194 164 209 0.86 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_2 - 188 Methyltransf_12 PF08242.7 99 6.1e-06 18.8 0.0 1 1 2e-07 1.1e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_12 - 92 HTH_Tnp_IS1 PF12759.2 46 1.1e-31 100.1 0.2 1 1 3.2e-33 1.7e-31 99.5 0.2 1 46 43 88 43 88 0.99 # 13678 # 13953 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 3_2 - 188 Methyltrans_SAM PF10672.4 286 0.0005 11.0 0.0 1 1 1.3e-05 0.00071 10.5 0.0 196 261 113 173 100 180 0.78 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 5_1 - 235 HTH_28 PF13518.1 52 3.1e-05 16.0 1.2 1 1 7.6e-06 0.00014 14.0 1.2 22 36 40 54 13 55 0.76 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_12 - 92 HTH_28 PF13518.1 52 4.8e-05 15.4 0.0 1 1 4e-06 7.2e-05 14.8 0.0 4 35 55 86 53 90 0.90 # 13678 # 13953 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_9 - 186 HTH_28 PF13518.1 52 7.1e-05 14.9 0.0 1 1 1.3e-05 0.00023 13.2 0.0 8 33 154 179 148 184 0.82 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_3 - 208 HTH_Tnp_1_2 PF13022.1 142 5.4e-05 15.1 0.0 1 1 1.7e-06 8.9e-05 14.3 0.0 26 77 15 64 2 68 0.78 # 808 # 1431 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 2_2 - 208 HTH_24 PF13412.1 48 3.5e-07 21.6 0.1 1 1 1.3e-08 7e-07 20.7 0.1 3 48 4 49 2 49 0.90 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 2_6 - 139 HTH_18 PF12833.2 81 4.3e-24 76.5 2.0 1 1 1.1e-25 5.8e-24 76.1 2.0 1 81 50 129 50 129 0.97 # 3512 # 3928 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.360 3_2 - 188 TIGR03533 TIGR03533 284 1.2e-05 16.5 0.0 1 1 3.5e-07 1.9e-05 15.8 0.0 116 210 45 133 37 141 0.87 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_2 - 188 TIGR03534 TIGR03534 253 1.7e-08 25.9 0.0 1 1 3.7e-10 2e-08 25.7 0.0 81 175 45 131 11 148 0.85 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 2_2 - 208 HTH_10 PF04967.7 53 0.00035 12.2 0.3 1 1 2.4e-05 0.0013 10.4 0.0 22 46 17 41 15 44 0.92 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 1_7 - 1757 UvrD_C_2 PF13538.1 104 7.1e-08 24.7 0.8 1 2 0.013 0.71 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_7 - 1757 UvrD_C_2 PF13538.1 104 7.1e-08 24.7 0.8 2 2 4.1e-08 2.2e-06 19.8 0.2 3 102 1341 1444 1339 1446 0.77 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 3_2 - 188 TIGR00755 TIGR00755 256 1.4e-09 29.3 0.0 1 1 3.4e-11 1.8e-09 28.9 0.0 8 105 29 123 25 134 0.90 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 2_16 - 85 Rad60-SLD PF11976.3 72 5.5e-05 14.9 0.1 1 1 1.5e-06 7.8e-05 14.4 0.1 12 39 39 66 31 75 0.83 # 13804 # 14058 # -1 # ID=2_16;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 3_12 - 321 StbA PF06406.6 318 4.3e-157 513.9 1.5 1 1 9e-159 4.9e-157 513.8 1.5 1 317 1 317 1 318 0.99 # 7941 # 8903 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 3_12 - 321 YbaB_DNA_bd PF02575.11 93 0.00032 12.7 0.1 1 3 0.038 2 0.5 0.0 33 63 129 160 112 160 0.80 # 7941 # 8903 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 3_12 - 321 YbaB_DNA_bd PF02575.11 93 0.00032 12.7 0.1 2 3 0.028 1.5 0.9 0.0 63 78 201 216 195 223 0.84 # 7941 # 8903 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 3_12 - 321 YbaB_DNA_bd PF02575.11 93 0.00032 12.7 0.1 3 3 0.00045 0.024 6.6 0.0 63 87 247 271 235 276 0.84 # 7941 # 8903 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_13 - 94 TIGR02211 TIGR02211 221 7.1e-05 14.1 0.0 1 1 1.4e-06 7.7e-05 14.0 0.0 114 167 14 72 2 87 0.78 # 11194 # 11475 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00033 12.2 0.0 1 2 0.00032 0.017 6.6 0.0 1 23 988 1012 988 1162 0.77 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00033 12.2 0.0 2 2 0.005 0.27 2.7 0.0 174 234 1387 1447 1335 1447 0.63 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 2_3 - 208 CENP-B_N PF04218.8 53 0.00027 12.4 0.0 1 1 1e-05 0.00054 11.5 0.0 26 51 28 53 23 55 0.90 # 808 # 1431 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 1_8 - 730 T4SS-DNA_transf PF02534.9 469 1.5e-10 32.2 0.0 1 2 0.012 0.67 0.4 0.0 125 191 257 322 198 352 0.73 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 730 T4SS-DNA_transf PF02534.9 469 1.5e-10 32.2 0.0 2 2 2.2e-11 1.2e-09 29.2 0.0 264 366 382 481 359 500 0.78 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 139 Ribosomal_S8 PF00410.14 129 0.00071 11.5 1.8 1 2 0.0059 0.32 2.9 0.1 41 73 2 29 1 35 0.56 # 3512 # 3928 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.360 2_6 - 139 Ribosomal_S8 PF00410.14 129 0.00071 11.5 1.8 2 2 0.00012 0.0066 8.4 0.1 50 87 90 128 50 135 0.79 # 3512 # 3928 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.360 3_2 - 188 MTS PF05175.9 170 4.7e-10 31.1 0.0 1 1 1.2e-11 6.4e-10 30.7 0.0 31 141 50 149 41 166 0.84 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 2_2 - 208 HTH_45 PF14947.1 77 3.7e-05 15.6 0.2 1 2 9e-06 0.00049 12.0 0.0 10 53 8 55 5 76 0.75 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 2_2 - 208 HTH_45 PF14947.1 77 3.7e-05 15.6 0.2 2 2 0.045 2.4 0.2 0.0 55 65 190 200 177 204 0.79 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 1_11 - 126 DDE_Tnp_IS1 PF03400.8 131 1.8e-76 246.5 1.5 1 1 3.7e-78 2e-76 246.4 1.5 7 131 1 125 1 125 1.00 # 13256 # 13633 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_12 - 92 zinc_ribbon_5 PF13719.1 37 6.1e-06 17.9 2.9 1 1 3.2e-07 1.7e-05 16.4 2.9 3 36 6 40 5 41 0.83 # 13678 # 13953 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 5_1 - 235 DDE_Tnp_IS240 PF13610.1 140 4.1e-53 171.2 0.0 1 1 1.1e-54 5.7e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 53 # 757 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_12 - 92 Zn_Tnp_IS1595 PF12760.2 46 9.3e-05 14.3 2.3 1 1 3.4e-06 0.00018 13.4 2.3 21 46 8 38 5 38 0.74 # 13678 # 13953 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 2_2 - 208 HTH_11 PF08279.7 55 0.00057 11.6 0.1 1 1 3.5e-05 0.0019 10.0 0.0 4 43 8 46 6 60 0.82 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 2_2 - 208 MarR_2 PF12802.2 62 4.6e-05 15.2 0.1 1 1 2.1e-06 0.00011 13.9 0.1 10 55 9 52 2 57 0.83 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 2_2 - 208 HTH_5 PF01022.15 47 3.7e-11 34.7 0.1 1 1 1.5e-12 8.3e-11 33.5 0.1 3 46 5 49 3 50 0.92 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 2_2 - 208 TrmB PF01978.14 68 5.2e-08 24.6 0.0 1 1 4.3e-09 1.2e-07 23.5 0.0 11 62 7 58 6 62 0.93 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 2_9 - 186 TrmB PF01978.14 68 3.1e-05 15.7 0.0 1 1 2.3e-06 6.1e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_5 - 198 UPF0122 PF04297.9 101 4.6e-05 15.5 1.5 1 1 8.6e-07 4.6e-05 15.5 1.5 3 76 4 77 1 101 0.83 # 2831 # 3424 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.328 1_8 - 730 AAA_10 PF12846.2 304 3.1e-08 25.3 0.0 1 1 6.2e-09 3.4e-07 22.0 0.0 3 296 187 494 186 500 0.67 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 2_2 - 208 HTH_20 PF12840.2 61 8.2e-12 36.9 0.3 1 1 1.1e-12 2.1e-11 35.6 0.0 11 61 5 55 1 55 0.94 # 207 # 830 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 2_9 - 186 HTH_20 PF12840.2 61 2.3e-06 19.4 0.1 1 2 0.024 0.44 2.5 0.0 33 52 8 27 6 28 0.90 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_9 - 186 HTH_20 PF12840.2 61 2.3e-06 19.4 0.1 2 2 2.7e-05 0.00049 12.0 0.1 3 43 110 177 108 180 0.91 # 7791 # 8348 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_3 - 208 HTH_20 PF12840.2 61 0.00032 12.6 0.0 1 1 4.1e-05 0.00074 11.4 0.0 21 46 21 46 12 61 0.84 # 808 # 1431 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 3_2 - 188 RrnaAD PF00398.15 262 1.9e-09 28.9 0.0 1 1 4.4e-11 2.4e-09 28.6 0.0 9 113 29 128 24 148 0.89 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_2 - 188 Methyltransf_18 PF12847.2 112 1.6e-10 33.6 0.0 1 1 6.3e-12 3.4e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_12 - 92 DUF2387 PF09526.5 71 9.5e-05 14.4 0.2 1 1 2.3e-06 0.00012 14.0 0.2 10 47 7 47 5 72 0.76 # 13678 # 13953 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_7 - 1757 AAA_11 PF13086.1 236 8.3e-05 14.2 3.3 1 1 2.1e-06 0.00011 13.8 0.0 2 75 969 1039 968 1058 0.82 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 4_6 - 176 SSB PF00436.20 104 4.8e-41 130.9 0.3 1 1 1.1e-42 6.1e-41 130.6 0.3 1 101 6 109 6 112 0.95 # 4454 # 4981 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/f61fd669-6cb3-42a0-8f4b-72c026cb9914 # Target file: checkm_output/bins/pm841/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm841/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f61fd669-6cb3-42a0-8f4b-72c026cb9914 checkm_output/bins/pm841/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:16:07 2017 # [ok]