# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_19 - 388 KaiC PF06745.8 227 0.00076 11.5 0.0 1 1 1.4e-05 0.0013 10.7 0.0 11 59 144 191 137 201 0.76 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_39 - 134 HTH_IclR PF09339.5 52 7.3e-06 18.5 0.4 1 1 5.5e-07 2.7e-05 16.6 0.0 15 40 103 128 99 129 0.85 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 3_8 - 321 HTH_IclR PF09339.5 52 2e-05 17.0 0.3 1 2 0.024 1.2 1.8 0.0 24 36 165 177 163 186 0.81 # 5176 # 6138 # 1 # ID=3_8;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 3_8 - 321 HTH_IclR PF09339.5 52 2e-05 17.0 0.3 2 2 1.2e-05 0.0006 12.3 0.2 25 50 228 253 222 255 0.93 # 5176 # 6138 # 1 # ID=3_8;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 2_19 - 388 ABC_tran PF00005.22 137 0.00011 15.4 0.0 1 1 2.2e-06 0.00021 14.5 0.0 15 33 156 174 147 217 0.82 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_39 - 134 HTH_22 PF13309.1 64 8.7e-05 15.2 0.5 1 2 0.08 7.9 -0.7 0.0 25 38 23 36 12 36 0.82 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_39 - 134 HTH_22 PF13309.1 64 8.7e-05 15.2 0.5 2 2 7e-06 0.00069 12.3 0.2 33 63 102 127 91 128 0.76 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 3_1 - 57 HTH_Tnp_Tc3_2 PF01498.13 72 0.00022 14.2 0.0 1 1 4.9e-06 0.00024 14.1 0.0 14 39 26 51 11 55 0.89 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 4_7 - 57 HTH_Tnp_Tc3_2 PF01498.13 72 0.00023 14.1 0.0 1 1 4.7e-06 0.00023 14.1 0.0 14 39 26 51 11 55 0.88 # 3512 # 3682 # 1 # ID=4_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_19 - 388 FtsK_SpoIIIE PF01580.13 205 0.0001 14.7 0.0 1 1 2.1e-06 0.0002 13.7 0.0 41 59 155 173 135 184 0.85 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_39 - 134 HTH_40 PF14493.1 91 0.0003 13.9 0.6 1 2 0.068 6.7 -0.0 0.0 50 74 62 87 51 98 0.69 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_39 - 134 HTH_40 PF14493.1 91 0.0003 13.9 0.6 2 2 1.2e-05 0.0012 12.0 0.1 7 33 100 126 94 131 0.89 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_39 - 134 HTH_38 PF13936.1 44 1.5e-06 20.6 1.4 1 1 1e-07 3.3e-06 19.5 0.0 9 41 95 127 93 130 0.93 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 3_1 - 57 HTH_38 PF13936.1 44 0.00024 13.5 0.0 1 1 2.3e-05 0.00076 11.9 0.0 30 43 40 53 38 54 0.90 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 4_7 - 57 HTH_38 PF13936.1 44 0.00025 13.5 0.0 1 1 2.3e-05 0.00076 11.9 0.0 30 43 40 53 38 54 0.90 # 3512 # 3682 # 1 # ID=4_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_19 - 388 MobB PF03205.9 140 0.00052 12.6 0.0 1 1 1e-05 0.001 11.7 0.0 4 25 156 177 154 190 0.85 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 3_5 - 248 FmrO PF07091.6 251 1.1e-81 266.3 0.0 1 1 1.3e-83 1.3e-81 266.1 0.0 1 251 10 243 10 243 0.98 # 1554 # 2297 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_17 - 83 HTH_8 PF02954.14 42 9.9e-06 18.0 0.1 1 1 1.8e-07 1.8e-05 17.2 0.1 18 36 14 32 13 33 0.92 # 8829 # 9077 # -1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 2_6 - 1017 AAA_19 PF13245.1 76 0.00036 13.2 0.0 1 1 1.2e-05 0.0011 11.6 0.0 14 32 492 509 481 523 0.86 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 5_1 - 220 rve PF00665.21 120 3.1e-13 42.8 0.1 1 2 0.018 1.7 1.6 0.0 79 102 13 34 4 39 0.84 # 53 # 712 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 5_1 - 220 rve PF00665.21 120 3.1e-13 42.8 0.1 2 2 5.1e-14 5e-12 38.9 0.0 9 119 60 167 55 168 0.89 # 53 # 712 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 3_8 - 321 zf-ribbon_3 PF13248.1 26 0.046 5.9 8.2 1 2 0.0016 0.16 4.2 6.1 18 25 102 109 80 110 0.70 # 5176 # 6138 # 1 # ID=3_8;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 3_8 - 321 zf-ribbon_3 PF13248.1 26 0.046 5.9 8.2 2 2 3.9e-05 0.0038 9.4 0.8 18 24 102 108 99 116 0.67 # 5176 # 6138 # 1 # ID=3_8;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.664 2_19 - 388 AAA_23 PF13476.1 202 1.9e-06 21.2 0.5 1 1 4.3e-08 4.2e-06 20.0 0.2 19 44 152 177 136 195 0.84 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_24 - 122 CPSase_L_D3 PF02787.14 123 0.00079 12.1 0.1 1 1 1.2e-05 0.0012 11.6 0.1 50 96 45 91 21 101 0.79 # 23523 # 23888 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.415 2_19 - 388 SMC_N PF02463.14 220 0.001 11.2 0.0 1 1 1.8e-05 0.0017 10.4 0.0 25 50 153 178 146 195 0.81 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 3_1 - 57 HTH_Tnp_1 PF01527.15 76 2.3e-05 17.2 0.8 1 1 9.3e-07 4.6e-05 16.3 0.8 4 47 6 54 4 57 0.81 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 4_7 - 57 HTH_Tnp_1 PF01527.15 76 2.8e-05 17.0 0.5 1 1 1.1e-06 5.5e-05 16.0 0.5 4 47 6 54 4 57 0.81 # 3512 # 3682 # 1 # ID=4_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_39 - 134 GerE PF00196.14 58 0.00054 12.2 0.1 1 1 1.1e-05 0.001 11.3 0.1 11 35 99 123 97 126 0.93 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_37 - 696 TraG-D_C PF12696.2 128 0.00013 14.7 0.1 1 1 2.4e-06 0.00023 13.9 0.1 3 94 437 524 435 556 0.78 # 21414 # 23501 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 5_1 - 220 DDE_3 PF13358.1 146 0.00061 12.4 0.0 1 1 1.6e-05 0.0016 11.1 0.0 32 90 67 126 44 138 0.88 # 53 # 712 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_23 - 425 ACT PF01842.20 66 3.7e-05 16.1 0.5 1 3 0.039 3.8 0.1 0.0 13 27 232 246 231 246 0.91 # 12223 # 13497 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.602 1_23 - 425 ACT PF01842.20 66 3.7e-05 16.1 0.5 2 3 1.3e-05 0.0013 11.2 0.0 7 27 319 339 316 339 0.93 # 12223 # 13497 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.602 1_23 - 425 ACT PF01842.20 66 3.7e-05 16.1 0.5 3 3 0.056 5.5 -0.4 0.0 30 59 365 392 363 394 0.75 # 12223 # 13497 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.602 3_7 - 490 Cpn60_TCP1 PF00118.19 485 6.3e-111 364.1 9.6 1 1 7.7e-113 7.6e-111 363.9 9.6 35 484 4 467 3 468 0.93 # 3480 # 4949 # 1 # ID=3_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.642 1_17 - 83 HTH_37 PF13744.1 80 4.2e-05 16.2 0.0 1 1 1.8e-06 8.6e-05 15.2 0.0 24 54 7 37 4 46 0.89 # 8829 # 9077 # -1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_24 - 86 HTH_37 PF13744.1 80 0.00031 13.5 0.0 1 1 8.8e-06 0.00043 13.0 0.0 25 53 22 50 19 55 0.91 # 13515 # 13772 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_12 - 325 Hydantoinase_A PF01968.13 290 1.1e-07 24.1 3.6 1 2 5.2e-07 5.1e-05 15.3 0.1 67 96 158 186 140 193 0.83 # 5548 # 6522 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_12 - 325 Hydantoinase_A PF01968.13 290 1.1e-07 24.1 3.6 2 2 3.1e-05 0.0031 9.5 0.1 212 265 248 301 191 322 0.76 # 5548 # 6522 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_19 - 388 AAA_16 PF13191.1 185 0.00063 12.6 0.0 1 1 1.2e-05 0.0012 11.7 0.0 25 50 153 178 141 211 0.84 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 AAA_22 PF13401.1 131 4.1e-06 19.8 0.0 1 1 1.9e-07 9.5e-06 18.7 0.0 4 30 152 178 149 243 0.84 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_6 - 1017 AAA_22 PF13401.1 131 0.00037 13.5 0.0 1 1 2.4e-05 0.0012 11.9 0.0 8 69 492 557 486 594 0.67 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_38 - 115 Methyltransf_27 PF13708.1 194 1.6e-31 102.2 0.0 1 1 1.8e-33 1.7e-31 102.1 0.0 86 194 1 110 1 110 0.97 # 29528 # 29872 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.533 2_19 - 388 AAA_29 PF13555.1 62 8.3e-06 18.2 0.1 1 1 2e-07 2e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_39 - 134 HTH_Tnp_IS630 PF01710.11 120 5.8e-05 15.7 0.0 1 1 1.1e-06 0.00011 14.8 0.0 8 44 96 132 93 133 0.90 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 3_1 - 57 HTH_32 PF13565.1 77 5.6e-08 26.4 0.0 1 1 2.2e-09 7.1e-08 26.1 0.0 26 76 5 50 2 51 0.86 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 4_7 - 57 HTH_32 PF13565.1 77 1.6e-07 25.0 0.0 1 1 6e-09 2e-07 24.7 0.0 26 76 5 50 2 51 0.84 # 3512 # 3682 # 1 # ID=4_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_1 - 220 HTH_32 PF13565.1 77 1.5e-05 18.7 0.7 1 1 1.4e-06 4.6e-05 17.1 0.1 46 76 9 35 1 36 0.81 # 53 # 712 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_17 - 83 HTH_3 PF01381.17 55 1.8e-09 30.2 0.1 1 1 1.2e-10 3.1e-09 29.5 0.1 4 45 9 50 6 56 0.86 # 8829 # 9077 # -1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_3 - 89 HTH_3 PF01381.17 55 1.1e-06 21.4 0.0 1 1 5.6e-08 1.4e-06 21.0 0.0 8 36 41 69 33 78 0.88 # 1347 # 1613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_24 - 86 HTH_3 PF01381.17 55 2.5e-05 17.0 0.1 1 1 1.5e-06 3.6e-05 16.5 0.1 2 32 21 51 21 56 0.89 # 13515 # 13772 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_8 - 160 HTH_3 PF01381.17 55 8.9e-05 15.2 0.2 1 2 0.0029 0.071 5.9 0.0 2 20 15 33 14 37 0.91 # 3433 # 3912 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_8 - 160 HTH_3 PF01381.17 55 8.9e-05 15.2 0.2 2 2 0.0013 0.032 7.0 0.0 1 23 96 118 96 120 0.89 # 3433 # 3912 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 4_7 - 57 HTH_23 PF13384.1 50 3.5e-07 22.7 0.7 1 2 0.0092 0.13 5.0 0.1 7 27 11 35 7 36 0.72 # 3512 # 3682 # 1 # ID=4_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_7 - 57 HTH_23 PF13384.1 50 3.5e-07 22.7 0.7 2 2 2.1e-06 3e-05 16.6 0.1 28 42 41 55 40 57 0.89 # 3512 # 3682 # 1 # ID=4_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_1 - 57 HTH_23 PF13384.1 50 9e-07 21.4 1.0 1 2 0.02 0.28 3.9 0.1 10 27 17 35 10 36 0.70 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 3_1 - 57 HTH_23 PF13384.1 50 9e-07 21.4 1.0 2 2 2.1e-06 3e-05 16.6 0.1 28 42 41 55 40 57 0.89 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_24 - 86 HTH_23 PF13384.1 50 3e-06 19.7 0.2 1 1 3.6e-07 5e-06 19.0 0.2 12 38 23 49 19 56 0.84 # 13515 # 13772 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_3 - 89 HTH_23 PF13384.1 50 6.9e-06 18.6 0.0 1 1 7.4e-07 1e-05 18.0 0.0 16 39 38 64 33 68 0.83 # 1347 # 1613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 5_1 - 220 HTH_23 PF13384.1 50 1.2e-05 17.8 0.6 1 1 1.2e-05 0.00017 14.2 0.1 28 42 26 40 25 48 0.87 # 53 # 712 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_39 - 134 HTH_23 PF13384.1 50 2.4e-05 16.8 0.3 1 1 1.7e-06 2.4e-05 16.8 0.3 5 39 94 128 90 132 0.87 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_17 - 83 HTH_23 PF13384.1 50 4.4e-05 16.0 0.0 1 1 6.1e-06 8.6e-05 15.1 0.0 15 34 10 31 6 40 0.81 # 8829 # 9077 # -1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_39 - 134 HTH_7 PF02796.10 45 1e-13 43.9 0.6 1 1 2.8e-15 2.8e-13 42.5 0.1 1 44 89 129 89 130 0.97 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_17 - 83 HTH_19 PF12844.2 64 3.9e-08 26.2 0.0 1 1 1.7e-09 5.6e-08 25.7 0.0 8 45 10 47 8 56 0.86 # 8829 # 9077 # -1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_24 - 86 HTH_19 PF12844.2 64 8.3e-06 18.7 0.0 1 1 3.5e-07 1.1e-05 18.3 0.0 5 35 21 51 21 60 0.91 # 13515 # 13772 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_3 - 89 HTH_19 PF12844.2 64 8.2e-05 15.5 0.0 1 1 3.4e-06 0.00011 15.1 0.0 4 39 33 69 30 73 0.85 # 1347 # 1613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_39 - 134 HTH_29 PF13551.1 112 4.6e-05 16.5 0.8 1 2 0.021 2.1 1.5 0.2 25 46 63 84 48 98 0.63 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_39 - 134 HTH_29 PF13551.1 112 4.6e-05 16.5 0.8 2 2 5.9e-06 0.00058 12.9 0.0 4 35 99 129 96 132 0.90 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 5_1 - 220 DDE_Tnp_IS66 PF03050.9 271 9e-12 37.6 0.5 1 1 3.5e-13 1.2e-11 37.2 0.5 15 132 5 129 1 160 0.87 # 53 # 712 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 3_1 - 57 DDE_Tnp_IS66 PF03050.9 271 1.1e-06 20.8 0.0 1 1 3.5e-08 1.1e-06 20.8 0.0 4 50 9 55 6 57 0.92 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 4_7 - 57 DDE_Tnp_IS66 PF03050.9 271 2.7e-06 19.6 0.0 1 1 8.3e-08 2.7e-06 19.6 0.0 4 50 9 55 6 57 0.90 # 3512 # 3682 # 1 # ID=4_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_5 - 248 Methyltransf_31 PF13847.1 152 0.00024 13.6 0.0 1 1 3.3e-06 0.00033 13.2 0.0 5 46 106 144 102 222 0.82 # 1554 # 2297 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_37 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 1 3 1.7e-05 0.0017 9.8 0.0 16 36 134 154 125 158 0.88 # 21414 # 23501 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_37 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 2 3 9.3e-05 0.0091 7.4 0.1 93 140 235 281 229 303 0.80 # 21414 # 23501 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_37 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 3 3 0.083 8.1 -2.3 0.0 293 323 482 512 405 546 0.58 # 21414 # 23501 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 2_6 - 1017 AAA_18 PF13238.1 129 5.4e-05 16.4 0.1 1 1 4.2e-06 0.00041 13.6 0.0 2 19 492 509 492 562 0.79 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_28 - 435 IMS_HHH PF11798.3 32 0.00033 13.6 0.1 1 1 1e-05 0.00099 12.1 0.1 14 32 194 212 183 212 0.85 # 15054 # 16358 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_19 - 388 DUF87 PF01935.12 229 9.2e-05 15.2 0.0 1 1 1.8e-06 0.00018 14.2 0.0 28 45 157 174 155 188 0.89 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 4_7 - 57 HTH_28 PF13518.1 52 5.5e-06 19.2 1.9 1 1 1.5e-06 2.4e-05 17.2 1.9 14 36 27 54 10 55 0.69 # 3512 # 3682 # 1 # ID=4_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_1 - 57 HTH_28 PF13518.1 52 7.4e-06 18.9 2.6 1 1 2.2e-06 3.7e-05 16.6 2.6 12 36 25 54 10 55 0.69 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 5_1 - 220 HTH_28 PF13518.1 52 5.3e-05 16.1 1.1 1 1 1.4e-05 0.00023 14.1 1.1 22 36 25 39 2 40 0.76 # 53 # 712 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_3 - 89 HTH_28 PF13518.1 52 6.1e-05 15.9 0.0 1 1 5.2e-06 8.5e-05 15.4 0.0 7 34 34 64 33 68 0.82 # 1347 # 1613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_39 - 134 HTH_28 PF13518.1 52 6.7e-05 15.8 0.0 1 1 1.5e-05 0.00024 14.0 0.0 8 33 102 127 96 132 0.82 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_17 - 83 HTH_28 PF13518.1 52 0.00041 13.3 0.1 1 1 5.5e-05 0.00089 12.2 0.1 8 29 8 31 6 35 0.78 # 8829 # 9077 # -1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 3_5 - 248 TIGR03533 TIGR03533 284 7e-05 14.8 0.0 1 1 1.2e-06 0.00012 14.1 0.0 109 162 91 143 83 155 0.87 # 1554 # 2297 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_19 - 388 Miro PF08477.8 119 0.00093 12.6 0.0 1 1 2.1e-05 0.0021 11.5 0.0 4 28 157 186 156 220 0.72 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_17 - 83 HTH_31 PF13560.1 64 1.9e-09 30.6 0.9 1 1 9.9e-11 2.4e-09 30.2 0.9 9 56 9 55 6 72 0.90 # 8829 # 9077 # -1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 160 HTH_31 PF13560.1 64 1.4e-07 24.5 1.6 1 2 0.0049 0.12 5.6 0.1 6 33 14 41 12 47 0.88 # 3433 # 3912 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_8 - 160 HTH_31 PF13560.1 64 1.4e-07 24.5 1.6 2 2 6e-07 1.5e-05 18.1 0.3 4 39 94 129 91 135 0.88 # 3433 # 3912 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_24 - 86 HTH_31 PF13560.1 64 3.1e-07 23.5 0.7 1 1 1.2e-08 3.1e-07 23.5 0.7 7 36 21 50 6 58 0.90 # 13515 # 13772 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_3 - 89 HTH_31 PF13560.1 64 2e-06 20.9 0.0 1 1 1.1e-07 2.8e-06 20.4 0.0 2 42 29 69 28 80 0.84 # 1347 # 1613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_6 - 1017 DUF2075 PF09848.4 352 0.00036 12.4 0.0 1 1 1e-05 0.001 10.9 0.0 5 22 492 509 489 526 0.84 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_19 - 388 T2SE PF00437.15 272 2.1e-23 75.4 0.0 1 1 3.4e-25 3.3e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_12 - 325 StbA PF06406.6 318 3.2e-157 515.2 0.2 1 1 3.7e-159 3.6e-157 515.1 0.2 1 318 1 322 1 322 0.99 # 5548 # 6522 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_19 - 388 NACHT PF05729.7 166 0.00033 13.2 0.0 1 1 6.6e-06 0.00065 12.3 0.0 4 29 156 181 154 188 0.83 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_6 - 1017 AAA_17 PF13207.1 121 4.4e-05 17.2 0.0 1 1 2.9e-06 0.00029 14.6 0.0 3 28 492 523 492 587 0.67 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_19 - 388 AAA_25 PF13481.1 194 5.5e-06 18.8 0.0 1 1 1.1e-07 1.1e-05 17.8 0.0 25 53 144 172 122 178 0.89 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_31 - 147 RepA_N PF06970.6 76 0.00083 12.1 0.0 1 1 1.7e-05 0.0017 11.1 0.0 15 44 56 85 54 90 0.92 # 26635 # 27075 # -1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_12 - 325 Hydant_A_N PF05378.8 176 0.00098 11.5 3.9 1 4 0.08 7.8 -1.2 0.0 1 19 2 20 2 48 0.82 # 5548 # 6522 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_12 - 325 Hydant_A_N PF05378.8 176 0.00098 11.5 3.9 2 4 0.049 4.8 -0.5 0.0 108 154 38 86 15 103 0.67 # 5548 # 6522 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_12 - 325 Hydant_A_N PF05378.8 176 0.00098 11.5 3.9 3 4 0.057 5.6 -0.7 0.0 95 129 113 147 89 153 0.76 # 5548 # 6522 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_12 - 325 Hydant_A_N PF05378.8 176 0.00098 11.5 3.9 4 4 3.6e-05 0.0035 9.7 0.2 2 51 170 217 169 226 0.82 # 5548 # 6522 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_3 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.00036 12.6 0.0 1 1 5e-06 0.00049 12.2 0.0 19 49 35 64 33 65 0.91 # 1347 # 1613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_3 - 89 CENP-B_N PF04218.8 53 0.0014 11.0 0.0 1 1 1.9e-05 0.0019 10.6 0.0 24 49 44 69 34 72 0.88 # 1347 # 1613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_19 - 388 Ribosomal_S5 PF00333.15 67 3.1e-05 16.6 0.1 1 2 0.00093 0.091 5.5 0.0 26 45 84 103 77 114 0.83 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 Ribosomal_S5 PF00333.15 67 3.1e-05 16.6 0.1 2 2 0.00012 0.011 8.4 0.0 21 54 242 274 230 278 0.91 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 3_1 - 57 Arg_repressor PF01316.16 70 0.0003 13.2 0.0 1 1 8.8e-06 0.00043 12.7 0.0 23 46 29 52 26 54 0.92 # 1 # 171 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 4_7 - 57 Arg_repressor PF01316.16 70 0.00031 13.2 0.0 1 1 8.8e-06 0.00043 12.7 0.0 23 46 29 52 26 54 0.92 # 3512 # 3682 # 1 # ID=4_7;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_19 - 388 RNA_helicase PF00910.17 107 0.0011 12.1 0.0 1 1 2.5e-05 0.0024 10.9 0.0 3 26 157 180 156 197 0.81 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 3_5 - 248 Methyltransf_23 PF13489.1 161 9.5e-05 15.0 0.0 1 1 1.7e-06 0.00016 14.3 0.0 7 59 89 141 80 226 0.78 # 1554 # 2297 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_24 - 86 Mor PF08765.6 108 0.00037 13.2 0.0 1 1 4.7e-06 0.00046 12.9 0.0 71 92 27 48 18 57 0.85 # 13515 # 13772 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_3 - 89 Phage_CII PF05269.6 91 0.00071 12.5 0.0 1 1 9.2e-06 0.0009 12.2 0.0 17 45 36 64 32 81 0.83 # 1347 # 1613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_19 - 388 ATP_bind_1 PF03029.12 238 0.0008 11.8 0.0 1 1 1.3e-05 0.0013 11.2 0.0 1 25 157 181 157 191 0.84 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 5_1 - 220 DDE_Tnp_IS240 PF13610.1 140 6.2e-53 171.4 0.0 1 1 1.7e-54 8.5e-53 171.0 0.0 4 139 60 197 58 198 0.99 # 53 # 712 # -1 # ID=5_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 2_15 - 66 DDE_Tnp_IS240 PF13610.1 140 0.00026 13.9 0.0 1 1 5.6e-06 0.00028 13.8 0.0 29 64 18 52 5 58 0.83 # 14244 # 14441 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_24 - 86 HTH_26 PF13443.1 63 7.9e-05 15.7 0.0 1 1 2.7e-06 0.00013 15.0 0.0 4 34 22 52 21 56 0.90 # 13515 # 13772 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_3 - 89 HTH_26 PF13443.1 63 0.00026 14.1 0.0 1 1 7.2e-06 0.00035 13.7 0.0 11 47 43 78 33 82 0.90 # 1347 # 1613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_39 - 134 TrmB PF01978.14 68 3.5e-05 16.4 0.0 1 1 6.5e-07 6.3e-05 15.6 0.0 19 44 103 128 97 129 0.89 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_3 - 89 HTH_Crp_2 PF13545.1 76 0.00044 12.9 0.0 1 1 6.6e-06 0.00065 12.4 0.0 26 50 40 64 32 65 0.88 # 1347 # 1613 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 2_6 - 1017 AAA_10 PF12846.2 304 7.4e-42 136.6 0.0 1 1 4.6e-43 1.5e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_37 - 696 AAA_10 PF12846.2 304 6.2e-10 31.8 0.0 1 1 2.8e-11 9.2e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 21414 # 23501 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 2_19 - 388 AAA_10 PF12846.2 304 1.2e-06 21.0 0.0 1 1 2.1e-07 6.9e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_39 - 134 HTH_20 PF12840.2 61 3.2e-05 16.6 0.1 1 1 4.3e-06 0.00042 13.0 0.1 2 43 57 125 56 128 0.92 # 24702 # 25103 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 3_5 - 248 Methyltransf_18 PF12847.2 112 1.8e-05 18.2 0.0 1 1 3.1e-07 3e-05 17.5 0.0 3 43 106 144 104 210 0.78 # 1554 # 2297 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.594 3_6 - 362 TIGR00430 TIGR00430 368 5.5e-89 291.2 0.0 1 1 6.3e-91 6.2e-89 291.0 0.0 15 343 4 358 1 361 0.92 # 2316 # 3401 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.578 4_5 - 280 Pterin_bind PF00809.17 210 2.5e-58 189.7 0.0 1 1 3e-60 3e-58 189.5 0.0 1 210 7 216 7 216 0.98 # 2234 # 3073 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 2_28 - 145 SSB PF00436.20 104 7.2e-32 102.3 0.2 1 1 8.4e-34 8.2e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 25425 # 25859 # -1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_19 - 388 GTP_EFTU PF00009.22 188 0.0011 11.3 0.0 1 1 2e-05 0.0019 10.5 0.0 8 34 157 183 155 195 0.87 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/b3a74923-e911-4858-aa36-e7a876c883a3 # Target file: checkm_output/bins/pm830/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm830/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b3a74923-e911-4858-aa36-e7a876c883a3 checkm_output/bins/pm830/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:15:55 2017 # [ok]