# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_50 - 179 KaiC PF06745.8 227 5.4e-05 15.0 0.1 1 2 3.7e-06 0.00031 12.5 0.0 16 43 28 55 16 60 0.85 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 KaiC PF06745.8 227 5.4e-05 15.0 0.1 2 2 0.021 1.8 0.2 0.0 133 184 112 157 91 171 0.54 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 ABC_tran PF00005.22 137 5.5e-07 22.6 0.0 1 1 4e-08 1.1e-06 21.6 0.0 14 73 186 243 178 310 0.78 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_50 - 179 ABC_tran PF00005.22 137 3e-06 20.2 0.0 1 1 2.1e-07 6e-06 19.3 0.0 4 31 24 51 22 59 0.84 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_46 - 513 ABC_tran PF00005.22 137 0.00021 14.3 0.0 1 1 1.9e-05 0.00053 13.0 0.0 12 37 235 260 228 338 0.89 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_50 - 179 DUF815 PF05673.8 250 0.00023 12.8 0.0 1 1 3.7e-06 0.00031 12.3 0.0 52 74 30 52 2 79 0.68 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 Sigma54_activat PF00158.21 168 5.4e-07 21.9 0.0 1 1 2.2e-08 9.1e-07 21.1 0.0 5 47 14 57 10 74 0.81 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 Sigma54_activat PF00158.21 168 3.6e-06 19.2 0.0 1 2 1e-06 4.2e-05 15.7 0.0 10 46 171 207 163 223 0.81 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_52 - 352 Sigma54_activat PF00158.21 168 3.6e-06 19.2 0.0 2 2 0.034 1.4 1.0 0.0 42 91 234 284 229 291 0.76 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_50 - 179 FtsK_SpoIIIE PF01580.13 205 4.1e-06 19.0 0.2 1 1 1.7e-07 7.2e-06 18.2 0.1 34 59 27 52 4 54 0.70 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 FtsK_SpoIIIE PF01580.13 205 8.3e-06 18.0 0.0 1 1 3.4e-07 1.4e-05 17.3 0.0 20 58 163 203 150 205 0.82 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_80 - 326 TIGR01932 TIGR01932 318 7.4e-16 50.1 11.5 1 2 2.8e-11 2.3e-09 28.8 0.5 5 144 14 143 10 158 0.79 # 62303 # 63280 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_80 - 326 TIGR01932 TIGR01932 318 7.4e-16 50.1 11.5 2 2 9.9e-11 8.3e-09 27.0 5.5 173 279 141 254 138 293 0.80 # 62303 # 63280 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_80 - 326 TIGR01933 TIGR01933 261 2.3e-25 81.8 3.4 1 1 4.5e-27 3.8e-25 81.1 3.4 6 207 35 234 30 287 0.88 # 62303 # 63280 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_8 - 222 MobB PF03205.9 140 3.6e-07 22.6 0.1 1 2 1.9e-06 5.3e-05 15.6 0.1 10 38 13 41 3 48 0.81 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_8 - 222 MobB PF03205.9 140 3.6e-07 22.6 0.1 2 2 0.0037 0.1 5.0 0.0 44 75 85 119 75 137 0.78 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_50 - 179 MobB PF03205.9 140 6.2e-05 15.4 0.0 1 1 1.2e-05 0.00034 13.0 0.0 3 21 34 52 32 72 0.88 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 MobB PF03205.9 140 0.00035 13.0 0.0 1 1 8e-05 0.0023 10.3 0.0 4 24 187 207 185 221 0.81 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_69 - 82 TIGR03302 TIGR03302 239 7.8e-05 14.6 0.7 1 1 1e-06 8.5e-05 14.4 0.7 4 64 10 72 7 80 0.84 # 57735 # 57980 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.370 1_52 - 352 AAA_19 PF13245.1 76 6.2e-07 21.8 0.0 1 1 3.7e-08 1e-06 21.1 0.0 5 35 178 207 174 287 0.86 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_46 - 513 AAA_19 PF13245.1 76 1.7e-05 17.2 0.0 1 1 2.7e-06 7.5e-05 15.1 0.0 5 35 228 258 224 281 0.82 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_50 - 179 AAA_19 PF13245.1 76 0.00051 12.5 0.0 1 1 0.00013 0.0036 9.8 0.0 8 30 29 51 22 54 0.70 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_8 - 222 CbiA PF01656.18 195 2.6e-19 62.0 0.3 1 1 1.4e-20 5.9e-19 60.9 0.3 2 174 6 161 5 182 0.70 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_23 - 251 CbiA PF01656.18 195 6.6e-08 24.8 0.4 1 1 4e-09 1.7e-07 23.5 0.3 3 46 8 51 7 195 0.69 # 14424 # 15176 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_8 - 222 KTI12 PF08433.5 270 0.00041 12.2 0.1 1 1 9.8e-06 0.00082 11.2 0.1 11 41 13 43 4 57 0.81 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_50 - 179 MCM PF00493.18 331 0.0001 13.8 0.0 1 1 1.7e-06 0.00015 13.3 0.0 53 76 27 50 7 60 0.84 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 AAA_23 PF13476.1 202 1.5e-06 21.3 0.0 1 1 1.1e-07 3.2e-06 20.2 0.0 22 40 186 204 169 210 0.91 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_46 - 513 AAA_23 PF13476.1 202 2e-05 17.6 0.0 1 1 2.7e-06 7.6e-05 15.7 0.0 19 36 234 251 218 279 0.88 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_50 - 179 AAA_23 PF13476.1 202 3.7e-05 16.8 0.4 1 1 2.4e-06 6.6e-05 15.9 0.1 18 36 30 48 21 52 0.81 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 Zeta_toxin PF06414.7 201 4.1e-05 15.4 0.0 1 1 2.3e-06 9.9e-05 14.1 0.0 14 47 181 215 168 231 0.82 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_46 - 513 Zeta_toxin PF06414.7 201 0.00053 11.8 0.0 1 1 2.4e-05 0.001 10.8 0.0 18 39 236 257 222 270 0.85 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_46 - 513 AAA_30 PF13604.1 196 4.6e-07 22.2 0.0 1 1 3e-08 8.5e-07 21.4 0.0 3 42 219 258 217 267 0.92 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_50 - 179 AAA_30 PF13604.1 196 0.0003 13.1 0.1 1 1 2.1e-05 0.00059 12.1 0.0 7 37 21 50 20 53 0.84 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 AAA_30 PF13604.1 196 0.00032 13.0 0.0 1 1 1.9e-05 0.00054 12.2 0.0 10 42 176 207 168 216 0.74 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_51 - 653 TraG-D_C PF12696.2 128 1.1e-27 89.1 0.0 1 1 2.6e-29 2.2e-27 88.1 0.0 2 127 427 551 426 552 0.87 # 43473 # 45431 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_8 - 222 MipZ PF09140.6 261 7.8e-13 40.7 0.4 1 1 1.9e-12 1.6e-10 33.1 0.4 3 131 5 112 3 133 0.81 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_52 - 352 AAA_21 PF13304.1 303 0.00011 14.9 0.0 1 1 3.4e-06 0.00029 13.5 0.0 3 29 187 214 186 328 0.86 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_52 - 352 AAA PF00004.24 132 4.8e-05 16.2 0.0 1 1 1.3e-06 0.00011 15.1 0.0 2 31 187 216 186 263 0.62 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_33 - 719 zf-C4_Topoisom PF01396.14 39 0.001 11.3 1.5 1 1 2.7e-05 0.0023 10.2 1.5 4 33 636 658 634 664 0.79 # 25188 # 27344 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_52 - 352 TIGR00382 TIGR00382 414 0.00039 11.8 0.0 1 1 6.3e-06 0.00053 11.4 0.0 116 140 182 206 112 209 0.83 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_4 - 54 P22_Cro PF14549.1 60 0.00065 12.1 0.0 1 1 1e-05 0.00084 11.8 0.0 8 29 11 32 5 41 0.85 # 4180 # 4341 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_50 - 179 AAA_16 PF13191.1 185 4.1e-06 19.5 0.1 1 1 2.6e-07 7.1e-06 18.7 0.1 23 45 30 52 17 137 0.82 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_46 - 513 AAA_16 PF13191.1 185 7.7e-06 18.6 0.1 1 1 6.3e-07 1.8e-05 17.5 0.1 8 49 222 259 221 382 0.84 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_52 - 352 AAA_16 PF13191.1 185 0.00015 14.4 0.0 1 1 8.9e-06 0.00025 13.7 0.0 24 51 183 210 155 235 0.79 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_50 - 179 AAA_22 PF13401.1 131 3.4e-07 23.1 0.0 1 1 2.4e-08 6.6e-07 22.2 0.0 3 37 30 72 27 169 0.69 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_46 - 513 AAA_22 PF13401.1 131 1.3e-05 18.0 0.0 1 1 1e-06 2.8e-05 16.9 0.0 4 28 234 258 230 330 0.82 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_52 - 352 AAA_22 PF13401.1 131 0.00013 14.8 0.0 1 1 2.4e-05 0.00067 12.5 0.0 6 30 185 209 177 251 0.80 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_52 - 352 AAA_29 PF13555.1 62 1.3e-06 20.6 0.0 1 1 1e-07 2.8e-06 19.5 0.0 25 51 185 211 174 216 0.86 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_50 - 179 AAA_29 PF13555.1 62 1.8e-06 20.1 0.0 1 1 1.1e-07 2.9e-06 19.4 0.0 19 40 28 48 15 61 0.77 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_46 - 513 AAA_29 PF13555.1 62 2.2e-05 16.6 0.0 1 1 1.7e-06 4.9e-05 15.5 0.0 19 40 231 251 221 257 0.82 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_69 - 82 Ribosomal_S5_C PF03719.10 74 0.00047 12.1 0.2 1 1 9.7e-06 0.00081 11.4 0.0 21 54 8 42 5 47 0.92 # 57735 # 57980 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.370 1_8 - 222 SRP54 PF00448.17 196 3.4e-05 16.0 0.1 1 1 1.3e-06 0.00011 14.3 0.1 11 56 13 54 4 104 0.66 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_52 - 352 AAA_28 PF13521.1 163 2e-05 17.3 0.1 1 1 6.2e-07 5.2e-05 15.9 0.0 2 32 186 221 185 291 0.82 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_13 - 81 HTH_3 PF01381.17 55 0.00049 12.6 0.1 1 1 1.2e-05 0.001 11.6 0.0 1 25 10 34 10 34 0.89 # 9404 # 9646 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.416 1_46 - 513 Rad17 PF03215.10 519 0.00076 10.8 0.0 1 1 1.4e-05 0.0012 10.2 0.0 42 69 231 258 220 275 0.79 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_8 - 222 Fer4_NifH PF00142.13 273 4.3e-06 18.7 0.1 1 1 1.8e-07 7.6e-06 17.9 0.1 8 41 11 44 6 74 0.92 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_23 - 251 Fer4_NifH PF00142.13 273 3.8e-05 15.6 0.5 1 2 2e-05 0.00082 11.2 0.1 5 46 9 51 5 94 0.72 # 14424 # 15176 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_23 - 251 Fer4_NifH PF00142.13 273 3.8e-05 15.6 0.5 2 2 0.011 0.48 2.1 0.0 146 200 153 208 145 216 0.81 # 14424 # 15176 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_13 - 81 HTH_19 PF12844.2 64 0.00033 13.4 0.5 1 1 4.8e-06 0.0004 13.1 0.5 2 18 8 24 7 70 0.84 # 9404 # 9646 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.416 1_52 - 352 NB-ARC PF00931.17 287 0.00023 12.7 0.0 1 1 1.2e-05 0.00052 11.5 0.0 11 40 175 204 165 213 0.84 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_50 - 179 NB-ARC PF00931.17 287 0.00036 12.1 0.0 1 1 1.4e-05 0.00057 11.4 0.0 4 50 19 62 16 72 0.74 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 Mg_chelatase PF01078.16 207 4e-06 18.8 0.0 1 1 1.7e-07 7.1e-06 17.9 0.0 9 53 171 214 166 244 0.81 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_50 - 179 Mg_chelatase PF01078.16 207 0.00015 13.6 0.0 1 1 5.2e-06 0.00022 13.1 0.0 10 42 19 51 11 68 0.86 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_3 - 411 OrfB_Zn_ribbon PF07282.6 69 1.6e-27 87.7 2.4 1 1 2.3e-29 1.9e-27 87.5 0.6 1 67 311 378 311 380 0.98 # 2771 # 4003 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_52 - 352 G-alpha PF00503.15 389 4.8e-07 21.4 0.0 1 1 1.5e-08 1.2e-06 20.0 0.0 44 124 169 260 147 344 0.78 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_46 - 513 Arch_ATPase PF01637.13 234 0.00011 14.6 0.0 1 1 5.2e-06 0.00022 13.6 0.0 8 43 223 257 221 270 0.90 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_50 - 179 Arch_ATPase PF01637.13 234 0.00015 14.2 0.1 1 1 6.9e-06 0.00029 13.2 0.1 16 122 29 135 18 137 0.52 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 AAA_5 PF07728.9 139 0.00025 13.5 0.0 1 1 1.1e-05 0.00044 12.7 0.0 1 31 185 215 185 280 0.90 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_50 - 179 AAA_5 PF07728.9 139 0.00042 12.7 0.0 1 1 2e-05 0.00086 11.7 0.0 1 19 33 51 33 56 0.90 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 ResIII PF04851.10 184 9.9e-05 14.9 0.1 1 1 2.7e-06 0.00011 14.7 0.1 11 45 23 51 7 138 0.80 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 ResIII PF04851.10 184 0.00029 13.4 0.0 1 1 1.3e-05 0.00055 12.4 0.0 22 49 174 206 140 223 0.76 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_51 - 653 TrwB_AAD_bind PF10412.4 386 3.7e-19 61.2 0.0 1 2 5.2e-07 1.4e-05 16.4 0.0 74 128 221 277 218 286 0.81 # 43473 # 45431 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_51 - 653 TrwB_AAD_bind PF10412.4 386 3.7e-19 61.2 0.0 2 2 5.5e-15 1.5e-13 42.7 0.0 163 369 340 554 287 563 0.82 # 43473 # 45431 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_50 - 179 TrwB_AAD_bind PF10412.4 386 1.1e-06 20.1 0.2 1 2 7.7e-07 2.2e-05 15.8 0.0 15 36 31 52 21 56 0.90 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 TrwB_AAD_bind PF10412.4 386 1.1e-06 20.1 0.2 2 2 0.012 0.33 2.1 0.0 30 49 117 136 116 142 0.89 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 TrwB_AAD_bind PF10412.4 386 0.00044 11.5 0.0 1 1 3.2e-05 0.00091 10.5 0.0 15 36 183 204 176 218 0.85 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_8 - 222 TIGR01968 TIGR01968 261 2.6e-12 38.9 0.3 1 2 2.3e-09 1.9e-07 23.0 0.1 2 49 3 47 2 60 0.86 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_8 - 222 TIGR01968 TIGR01968 261 2.6e-12 38.9 0.3 2 2 1.1e-06 9.3e-05 14.2 0.0 100 143 68 111 62 132 0.93 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_50 - 179 AAA_18 PF13238.1 129 5.7e-07 22.6 0.0 1 1 4.8e-08 1e-06 21.8 0.0 1 82 34 139 34 163 0.64 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 AAA_18 PF13238.1 129 5e-06 19.5 0.0 1 1 4.6e-07 9.6e-06 18.6 0.0 2 56 187 243 187 278 0.71 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_46 - 513 AAA_18 PF13238.1 129 3.7e-05 16.7 0.0 1 1 5.4e-06 0.00011 15.1 0.0 1 29 237 269 237 362 0.90 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_8 - 222 AAA_18 PF13238.1 129 5.3e-05 16.2 0.0 1 1 4.4e-06 9.2e-05 15.4 0.0 8 79 13 86 12 110 0.66 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_50 - 179 DUF258 PF03193.11 161 5.2e-06 18.4 0.0 1 1 6.5e-08 5.4e-06 18.3 0.0 16 59 11 55 1 138 0.71 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 DUF87 PF01935.12 229 1e-06 21.3 0.0 1 1 2.2e-08 1.9e-06 20.5 0.0 12 44 24 52 16 56 0.80 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 Sigma54_activ_2 PF14532.1 138 1.4e-06 21.0 0.0 1 1 7.1e-08 3e-06 20.0 0.0 6 108 16 138 14 153 0.66 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 Sigma54_activ_2 PF14532.1 138 0.00067 12.4 0.0 1 1 3.1e-05 0.0013 11.5 0.0 13 42 175 204 164 224 0.89 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_3 - 411 TIGR00344 TIGR00344 847 1.3e-05 15.8 1.1 1 1 2.4e-07 2e-05 15.3 1.1 681 778 189 283 180 296 0.78 # 2771 # 4003 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_50 - 179 MMR_HSR1 PF01926.18 116 2.3e-05 17.0 0.1 1 1 4.7e-07 3.9e-05 16.3 0.1 2 37 34 68 33 163 0.65 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 DEAD PF00270.24 169 0.00014 14.0 0.0 1 1 2.9e-06 0.00024 13.3 0.0 5 61 21 104 17 175 0.62 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 Miro PF08477.8 119 3.4e-05 17.0 0.0 1 1 2e-06 5.7e-05 16.3 0.0 1 25 33 57 33 106 0.84 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 Miro PF08477.8 119 0.00029 14.0 0.0 1 1 2.3e-05 0.00063 12.9 0.0 2 95 186 300 185 316 0.75 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_23 - 251 Miro PF08477.8 119 0.00031 13.9 0.4 1 1 3.9e-05 0.0011 12.1 0.1 3 74 8 83 6 97 0.77 # 14424 # 15176 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_3 - 411 HTH_OrfB_IS605 PF12323.3 46 3.1e-20 64.0 0.0 1 1 9.1e-22 7.6e-20 62.7 0.0 1 43 3 47 1 50 0.91 # 2771 # 4003 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_50 - 179 IIGP PF05049.8 376 0.00016 13.2 1.7 1 2 2e-06 0.00017 13.1 0.5 12 54 8 50 2 59 0.87 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 IIGP PF05049.8 376 0.00016 13.2 1.7 2 2 0.041 3.5 -1.1 0.0 195 226 52 82 50 131 0.64 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 T2SE PF00437.15 272 1.5e-65 213.4 0.0 1 1 6.4e-67 1.8e-65 213.1 0.0 5 266 29 327 26 333 0.95 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_46 - 513 T2SE PF00437.15 272 4.4e-39 126.6 0.0 1 1 2.4e-40 6.8e-39 126.0 0.0 66 271 166 385 151 386 0.87 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_50 - 179 T2SE PF00437.15 272 9.2e-08 23.9 0.1 1 1 5.6e-09 1.6e-07 23.1 0.1 104 149 11 52 1 59 0.67 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 NACHT PF05729.7 166 0.00021 13.6 0.1 1 1 6.2e-06 0.00052 12.3 0.0 3 20 34 51 32 60 0.90 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 AAA_17 PF13207.1 121 5.9e-07 23.0 0.0 1 1 7.7e-08 1.3e-06 21.9 0.0 3 38 187 235 185 306 0.66 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_46 - 513 AAA_17 PF13207.1 121 5.4e-06 19.9 0.0 1 1 7.2e-07 1.2e-05 18.8 0.0 1 35 236 276 236 370 0.66 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_8 - 222 AAA_17 PF13207.1 121 6.8e-06 19.6 0.0 1 1 1.2e-06 2e-05 18.1 0.0 9 101 13 111 12 128 0.60 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_50 - 179 AAA_17 PF13207.1 121 5.3e-05 16.7 0.2 1 1 5.4e-06 9e-05 16.0 0.2 2 33 34 66 33 129 0.70 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_23 - 251 AAA_17 PF13207.1 121 0.00032 14.2 0.0 1 1 3.9e-05 0.00066 13.2 0.0 3 100 8 126 6 242 0.76 # 14424 # 15176 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_50 - 179 TIGR02211 TIGR02211 221 1.5e-05 16.9 0.1 1 1 2.9e-07 2.4e-05 16.2 0.1 17 51 16 51 3 59 0.80 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 AAA_25 PF13481.1 194 2.7e-05 16.3 0.0 1 2 9.3e-07 7.8e-05 14.8 0.0 33 56 31 54 20 76 0.84 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 AAA_25 PF13481.1 194 2.7e-05 16.3 0.0 2 2 0.068 5.7 -1.1 0.0 178 185 128 135 97 169 0.54 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 AAA_15 PF13175.1 415 6.3e-05 14.7 0.3 1 1 7.7e-07 6.5e-05 14.7 0.3 17 43 10 59 2 132 0.74 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 Pox_A32 PF04665.7 241 3.2e-05 16.0 0.0 1 1 8.3e-07 7e-05 14.8 0.0 4 74 175 241 172 258 0.80 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_50 - 179 AAA_14 PF13173.1 128 2.7e-05 16.8 0.1 1 1 1.2e-06 5e-05 15.9 0.1 3 49 32 75 30 152 0.71 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_46 - 513 AAA_14 PF13173.1 128 0.00014 14.4 0.0 1 1 8.8e-06 0.00037 13.1 0.0 3 39 235 268 233 341 0.80 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_8 - 222 VirC1 PF07015.6 231 2e-08 26.2 0.0 1 1 4.8e-10 4.1e-08 25.2 0.0 5 55 6 56 3 61 0.93 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_50 - 179 AAA_33 PF13671.1 143 2.7e-05 16.7 0.1 1 1 3.9e-06 0.00016 14.2 0.1 2 95 34 160 34 176 0.60 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_46 - 513 AAA_33 PF13671.1 143 0.00033 13.2 0.0 1 1 1.8e-05 0.00077 12.0 0.0 2 81 237 325 236 337 0.63 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_51 - 653 T4SS-DNA_transf PF02534.9 469 4.9e-90 294.9 0.0 1 1 8.5e-92 7.2e-90 294.4 0.0 20 456 127 591 102 601 0.88 # 43473 # 45431 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_52 - 352 ATP_bind_1 PF03029.12 238 0.00041 12.6 0.0 1 1 9.6e-06 0.00081 11.6 0.0 1 25 188 212 188 219 0.85 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_52 - 352 PduV-EutP PF10662.4 143 1.6e-05 17.1 0.0 1 2 0.00041 0.035 6.3 0.0 103 135 12 44 6 48 0.87 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_52 - 352 PduV-EutP PF10662.4 143 1.6e-05 17.1 0.0 2 2 0.00013 0.011 7.9 0.0 5 22 187 204 184 212 0.90 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_33 - 719 Toprim_Crpt PF13342.1 62 9.2e-22 69.2 3.8 1 1 1.4e-23 1.1e-21 68.9 2.5 1 60 653 712 653 714 0.92 # 25188 # 27344 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_33 - 719 Zn_Tnp_IS1595 PF12760.2 46 0.0035 9.9 2.1 1 2 0.04 3.3 0.3 0.0 2 18 455 471 454 473 0.84 # 25188 # 27344 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_33 - 719 Zn_Tnp_IS1595 PF12760.2 46 0.0035 9.9 2.1 2 2 0.00045 0.038 6.6 2.1 21 44 636 656 630 658 0.85 # 25188 # 27344 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.449 1_57 - 786 AAA_10 PF12846.2 304 1.4e-22 73.1 0.0 1 1 3.4e-23 5.7e-22 71.1 0.0 2 291 424 698 423 709 0.78 # 49317 # 51674 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_50 - 179 AAA_10 PF12846.2 304 6.6e-07 21.6 0.0 1 2 2e-05 0.00033 12.8 0.0 3 22 33 52 31 62 0.84 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_50 - 179 AAA_10 PF12846.2 304 6.6e-07 21.6 0.0 2 2 0.0011 0.019 7.0 0.0 234 260 111 137 106 163 0.79 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_52 - 352 AAA_10 PF12846.2 304 0.00012 14.3 0.0 1 1 1.3e-05 0.00023 13.3 0.0 3 34 185 216 183 224 0.81 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_23 - 251 AAA_10 PF12846.2 304 0.00012 14.2 0.3 1 1 7.8e-06 0.00013 14.1 0.3 3 67 6 81 4 246 0.85 # 14424 # 15176 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_46 - 513 AAA_10 PF12846.2 304 0.0008 11.5 0.1 1 1 9.2e-05 0.0015 10.6 0.1 4 26 237 259 234 264 0.85 # 37852 # 39390 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_8 - 222 ArsA_ATPase PF02374.10 305 1.1e-06 20.5 0.0 1 1 4.3e-08 1.8e-06 19.8 0.0 4 39 6 41 3 55 0.88 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_23 - 251 ArsA_ATPase PF02374.10 305 0.00011 14.0 0.0 1 1 6.7e-06 0.00028 12.6 0.0 5 41 8 46 5 98 0.77 # 14424 # 15176 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_8 - 222 AAA_31 PF13614.1 157 2e-07 23.7 0.1 1 2 1.7e-06 0.00015 14.4 0.0 3 41 5 43 3 57 0.87 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_8 - 222 AAA_31 PF13614.1 157 2e-07 23.7 0.1 2 2 0.00027 0.023 7.3 0.0 106 151 68 112 63 115 0.90 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_52 - 352 IstB_IS21 PF01695.12 178 2.3e-05 16.5 0.0 1 1 5.2e-07 4.4e-05 15.6 0.0 44 68 180 204 155 238 0.91 # 45447 # 46502 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_8 - 222 GTP_EFTU PF00009.22 188 6.5e-08 24.9 0.0 1 1 2.4e-09 1e-07 24.2 0.0 15 116 15 124 10 200 0.78 # 6008 # 6673 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_50 - 179 GTP_EFTU PF00009.22 188 0.00042 12.4 0.1 1 1 3.3e-05 0.0014 10.7 0.0 5 28 33 56 29 63 0.86 # 42890 # 43426 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/db2c932c-b301-457e-9acc-7dd6be5111fc # Target file: checkm_output/bins/pm828/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm828/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/db2c932c-b301-457e-9acc-7dd6be5111fc checkm_output/bins/pm828/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:15:51 2017 # [ok]