# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 354 ABC_tran PF00005.22 137 4.9e-06 19.1 0.0 1 1 1.7e-07 9.8e-06 18.1 0.0 14 60 180 224 171 297 0.82 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_22 - 262 BSP PF04450.7 205 0.00014 13.5 0.0 1 1 3.9e-06 0.00023 12.8 0.0 94 114 71 91 51 107 0.74 # 11200 # 11985 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_56 - 269 Sigma54_activat PF00158.21 168 3.1e-05 15.6 0.0 1 1 9.7e-07 5.7e-05 14.8 0.0 12 44 13 45 4 77 0.82 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_29 - 354 FtsK_SpoIIIE PF01580.13 205 0.00012 13.7 0.0 1 1 4.6e-06 0.00027 12.6 0.0 39 58 177 197 158 199 0.79 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 MobB PF03205.9 140 4.8e-05 15.3 0.0 1 1 1.4e-06 8.5e-05 14.5 0.0 5 39 182 215 179 221 0.81 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_47 - 108 TIGR03302 TIGR03302 239 0.00017 13.0 0.2 1 1 3.9e-06 0.00023 12.5 0.1 4 48 28 71 25 83 0.89 # 32802 # 33125 # 1 # ID=1_47;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.358 1_50 - 327 TetR_N PF00440.18 47 5.8e-05 14.9 0.0 1 1 2.2e-06 0.00013 13.8 0.0 16 36 147 167 145 168 0.94 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_56 - 269 CbiA PF01656.18 195 1e-06 20.4 0.0 1 1 2.5e-08 1.5e-06 19.9 0.0 2 116 26 124 25 176 0.82 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_44 - 83 Sigma70_r4_2 PF08281.7 54 4.1e-05 15.2 0.0 1 1 2.4e-06 7.1e-05 14.4 0.0 26 44 25 43 21 46 0.91 # 30758 # 31006 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.422 1_50 - 327 Sigma70_r4_2 PF08281.7 54 7.5e-05 14.4 0.0 1 1 4.9e-06 0.00015 13.5 0.0 24 52 145 173 141 174 0.92 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_42 - 355 Rep_3 PF01051.16 222 6.1e-46 148.9 0.5 1 1 1.3e-47 7.9e-46 148.5 0.5 2 222 21 254 20 254 0.89 # 28603 # 29667 # -1 # ID=1_42;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.399 1_29 - 354 AAA_23 PF13476.1 202 0.00045 12.7 0.0 1 1 1.4e-05 0.00083 11.8 0.0 24 40 182 198 168 232 0.92 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 Zeta_toxin PF06414.7 201 0.00023 12.4 0.0 1 1 6.1e-06 0.00036 11.8 0.0 14 49 175 211 163 216 0.84 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 AAA_30 PF13604.1 196 0.00021 13.1 0.0 1 1 6e-06 0.00035 12.3 0.0 21 46 180 205 170 212 0.83 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_41 - 168 GerE PF00196.14 58 8.4e-08 23.7 0.2 1 2 4.7e-09 2.8e-07 22.0 0.0 2 50 24 72 23 79 0.91 # 28099 # 28602 # -1 # ID=1_41;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_41 - 168 GerE PF00196.14 58 8.4e-08 23.7 0.2 2 2 0.089 5.2 -1.3 0.0 10 24 106 120 105 125 0.86 # 28099 # 28602 # -1 # ID=1_41;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_28 - 674 TraG-D_C PF12696.2 128 1.1e-29 95.1 0.1 1 1 3.3e-31 1.9e-29 94.3 0.1 2 126 468 589 467 591 0.88 # 16192 # 18213 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.388 1_29 - 354 AAA_21 PF13304.1 303 1.5e-05 17.2 0.0 1 1 5.4e-07 3.2e-05 16.1 0.0 3 40 181 217 180 246 0.73 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_50 - 327 Sigma70_r4 PF04545.11 50 5.9e-06 17.8 0.0 1 1 1.9e-07 1.1e-05 16.8 0.0 6 36 131 163 131 165 0.91 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_50 - 327 KorB PF08535.5 93 2.2e-05 16.8 0.0 1 1 1.1e-06 6.2e-05 15.3 0.0 1 65 145 210 145 224 0.82 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_29 - 354 AAA_22 PF13401.1 131 0.00012 14.4 0.0 1 1 4.4e-06 0.00026 13.3 0.0 8 44 181 211 177 244 0.83 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 AAA_29 PF13555.1 62 1e-05 17.2 0.1 1 1 5.7e-07 3.3e-05 15.6 0.0 17 51 174 205 167 213 0.76 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 SRP54 PF00448.17 196 0.00022 12.9 0.0 1 1 6e-06 0.00036 12.2 0.0 4 29 180 205 177 211 0.84 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_50 - 327 HTH_3 PF01381.17 55 4.7e-06 18.6 0.0 1 1 2e-07 1.2e-05 17.3 0.0 6 37 144 176 138 182 0.85 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_50 - 327 HTH_23 PF13384.1 50 1.4e-05 16.9 0.1 1 1 2.4e-06 7.2e-05 14.6 0.0 16 39 143 169 133 179 0.76 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_44 - 83 HTH_23 PF13384.1 50 0.00012 13.9 0.0 1 1 6.5e-06 0.00019 13.3 0.0 11 36 17 44 13 51 0.87 # 30758 # 31006 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.422 1_29 - 354 Mg_chelatase PF01078.16 207 0.00034 12.0 0.0 1 1 8.8e-06 0.00052 11.3 0.0 24 59 179 214 171 257 0.76 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_1 - 1041 Plug PF07715.10 108 0.0002 13.9 0.2 1 3 0.033 1.9 1.1 0.0 41 90 230 275 211 280 0.83 # 3 # 3125 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.420 1_1 - 1041 Plug PF07715.10 108 0.0002 13.9 0.2 2 3 0.00038 0.023 7.3 0.0 15 86 715 791 699 794 0.73 # 3 # 3125 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.420 1_1 - 1041 Plug PF07715.10 108 0.0002 13.9 0.2 3 3 0.046 2.7 0.6 0.0 55 86 846 881 814 902 0.62 # 3 # 3125 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.420 1_50 - 327 Sigma70_r3 PF04539.11 78 0.00017 13.7 0.6 1 3 0.054 3.2 -0.0 0.0 58 74 108 124 96 127 0.76 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_50 - 327 Sigma70_r3 PF04539.11 78 0.00017 13.7 0.6 2 3 0.00021 0.012 7.7 0.0 22 46 149 173 149 176 0.92 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_50 - 327 Sigma70_r3 PF04539.11 78 0.00017 13.7 0.6 3 3 0.023 1.4 1.1 0.3 52 76 213 237 207 238 0.84 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_50 - 327 IF2_N PF04760.10 54 0.00026 12.8 0.3 1 3 0.055 3.3 -0.3 0.0 1 26 1 25 1 32 0.86 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_50 - 327 IF2_N PF04760.10 54 0.00026 12.8 0.3 2 3 0.00011 0.0066 8.4 0.0 2 25 146 169 145 202 0.83 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_50 - 327 IF2_N PF04760.10 54 0.00026 12.8 0.3 3 3 0.06 3.6 -0.4 0.0 32 47 273 288 271 290 0.77 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_29 - 354 AAA_5 PF07728.9 139 4.5e-05 15.4 0.0 1 1 1.4e-06 8.4e-05 14.5 0.0 3 33 181 211 179 218 0.87 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_22 - 262 SprT-like PF10263.4 157 4.3e-23 73.8 0.0 1 1 1.3e-24 7.4e-23 73.1 0.0 1 126 11 147 11 258 0.86 # 11200 # 11985 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_28 - 674 TrwB_AAD_bind PF10412.4 386 1.9e-18 58.3 0.0 1 2 0.00017 0.0051 7.5 0.0 75 130 248 307 242 322 0.75 # 16192 # 18213 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.388 1_28 - 674 TrwB_AAD_bind PF10412.4 386 1.9e-18 58.3 0.0 2 2 5.4e-17 1.6e-15 48.7 0.0 167 374 385 598 377 610 0.77 # 16192 # 18213 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.388 1_29 - 354 TrwB_AAD_bind PF10412.4 386 0.00042 11.1 0.0 1 1 2.3e-05 0.00068 10.4 0.0 17 44 179 206 170 214 0.77 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_56 - 269 TIGR01968 TIGR01968 261 0.0003 12.0 2.1 1 3 9.3e-05 0.0055 7.9 0.1 3 23 24 44 22 59 0.84 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_56 - 269 TIGR01968 TIGR01968 261 0.0003 12.0 2.1 2 3 0.079 4.7 -1.7 0.0 175 227 96 148 75 181 0.60 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_56 - 269 TIGR01968 TIGR01968 261 0.0003 12.0 2.1 3 3 0.0029 0.17 3.0 0.2 67 115 217 265 208 267 0.83 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_56 - 269 AAA_18 PF13238.1 129 0.0001 14.8 0.0 1 2 9.7e-06 0.00057 12.4 0.0 2 93 27 123 26 142 0.62 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_56 - 269 AAA_18 PF13238.1 129 0.0001 14.8 0.0 2 2 0.065 3.8 0.0 0.0 70 91 204 225 158 262 0.76 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_7 - 102 TIGR02209 TIGR02209 85 7e-07 21.1 1.4 1 2 1.2e-08 7e-07 21.1 1.4 1 48 1 48 1 49 0.93 # 4941 # 5246 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_7 - 102 TIGR02209 TIGR02209 85 7e-07 21.1 1.4 2 2 0.048 2.9 -0.1 0.9 25 48 64 87 59 99 0.57 # 4941 # 5246 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_6 - 78 ATP-synt_8 PF00895.15 54 0.063 5.8 8.9 1 1 0.003 0.18 4.3 8.9 9 33 15 40 6 76 0.89 # 4718 # 4951 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.286 1_44 - 83 MerR-DNA-bind PF09278.6 65 0.00029 13.4 0.0 1 1 6.7e-06 0.00039 13.0 0.0 13 38 24 49 15 56 0.89 # 30758 # 31006 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.422 1_50 - 327 HTH_24 PF13412.1 48 0.00027 12.5 0.0 1 1 1.3e-05 0.00075 11.1 0.0 16 38 146 168 137 170 0.89 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_58 - 130 DUF2250 PF10007.4 93 0.00058 12.0 0.6 1 2 0.0023 0.14 4.4 0.0 18 46 63 90 56 95 0.74 # 38986 # 39375 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.362 1_58 - 130 DUF2250 PF10007.4 93 0.00058 12.0 0.6 2 2 0.00022 0.013 7.7 0.3 12 51 82 122 77 128 0.83 # 38986 # 39375 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.362 1_44 - 83 HTH_31 PF13560.1 64 4.1e-05 16.0 0.0 1 1 1.8e-06 5.2e-05 15.6 0.0 3 31 14 42 12 47 0.88 # 30758 # 31006 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.422 1_50 - 327 HTH_31 PF13560.1 64 0.00053 12.4 0.0 1 1 3.9e-05 0.0012 11.3 0.0 12 43 145 176 126 183 0.86 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_29 - 354 T2SE PF00437.15 272 4e-54 175.4 0.0 1 1 1.7e-55 5e-54 175.1 0.0 5 265 20 323 16 328 0.93 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_31 - 45 T2SE PF00437.15 272 6.1e-05 14.1 0.1 1 1 2.1e-06 6.2e-05 14.1 0.1 134 171 7 43 2 44 0.78 # 19559 # 19693 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_29 - 354 NACHT PF05729.7 166 4.2e-05 15.4 0.0 1 1 1.6e-06 9.6e-05 14.2 0.0 4 23 181 200 179 207 0.88 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 AAA_17 PF13207.1 121 6e-05 16.1 0.0 1 1 3.9e-06 0.00012 15.1 0.0 4 32 182 212 180 264 0.76 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_56 - 269 AAA_17 PF13207.1 121 0.0004 13.4 0.0 1 1 2.9e-05 0.00086 12.3 0.0 2 28 26 53 25 144 0.60 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_29 - 354 Pox_A32 PF04665.7 241 3.4e-06 18.6 0.0 1 1 8.9e-08 5.2e-06 18.0 0.0 4 67 169 228 166 243 0.74 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 AAA_14 PF13173.1 128 9e-05 14.6 0.0 1 1 5.2e-06 0.00015 13.8 0.0 6 47 181 220 177 284 0.73 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_56 - 269 AAA_14 PF13173.1 128 0.00024 13.2 0.4 1 1 1.9e-05 0.00055 12.0 0.0 4 85 25 100 22 128 0.56 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_44 - 83 HTH_Tnp_ISL3 PF13542.1 52 2.6e-05 15.5 0.0 1 1 5.9e-07 3.5e-05 15.2 0.0 14 46 13 44 9 45 0.90 # 30758 # 31006 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.422 1_29 - 354 AAA_33 PF13671.1 143 2.8e-05 16.2 0.0 1 1 7.6e-07 4.5e-05 15.5 0.0 3 21 181 199 180 266 0.83 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_28 - 674 T4SS-DNA_transf PF02534.9 469 3.1e-96 314.8 1.3 1 2 1.7e-28 5.1e-27 86.6 0.0 4 103 109 207 106 220 0.94 # 16192 # 18213 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.388 1_28 - 674 T4SS-DNA_transf PF02534.9 469 3.1e-96 314.8 1.3 2 2 8.5e-71 2.5e-69 226.1 1.3 104 459 242 641 232 649 0.87 # 16192 # 18213 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.388 1_30 - 61 T4SS-DNA_transf PF02534.9 469 2.2e-06 18.6 0.0 1 1 8.6e-08 2.5e-06 18.4 0.0 58 84 10 36 8 46 0.94 # 19308 # 19490 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.339 1_56 - 269 RNA_helicase PF00910.17 107 0.00031 13.1 0.1 1 1 1.4e-05 0.0008 11.8 0.1 1 26 26 51 26 121 0.70 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_29 - 354 ATP_bind_1 PF03029.12 238 4.8e-05 15.1 0.0 1 1 1.3e-06 7.5e-05 14.5 0.0 2 25 183 206 182 211 0.86 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_25 - 728 Toprim_Crpt PF13342.1 62 4.7e-27 85.6 1.6 1 1 2.3e-28 1.3e-26 84.2 1.1 1 61 661 723 661 724 0.98 # 13120 # 15303 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.382 1_50 - 327 HTH_17 PF12728.2 51 0.00024 13.5 0.0 1 1 1.4e-05 0.00082 11.8 0.0 2 22 148 168 147 196 0.87 # 34074 # 35054 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_44 - 83 Sigma70_ECF PF07638.6 185 0.00011 14.0 0.0 1 1 2.3e-06 0.00013 13.8 0.0 132 171 6 45 3 58 0.88 # 30758 # 31006 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.422 1_36 - 842 AAA_10 PF12846.2 304 7e-24 76.9 0.0 1 1 3.4e-25 1e-23 76.4 0.0 1 291 427 727 427 734 0.82 # 23424 # 25949 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_29 - 354 AAA_10 PF12846.2 304 2.1e-05 16.2 0.0 1 1 1.3e-06 3.9e-05 15.3 0.0 4 34 180 210 178 215 0.87 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 Septin PF00735.13 281 0.00055 11.1 0.0 1 2 0.061 3.6 -1.4 0.0 234 254 2 22 1 26 0.87 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 Septin PF00735.13 281 0.00055 11.1 0.0 2 2 2.9e-05 0.0017 9.5 0.0 4 25 177 198 174 225 0.82 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_56 - 269 IstB_IS21 PF01695.12 178 2.9e-06 18.9 0.0 1 1 8.4e-08 4.9e-06 18.2 0.0 41 69 17 45 2 54 0.83 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/4ba4986a-2fed-4bd7-b67b-8a905952dd20 # Target file: checkm_output/bins/pm824/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm824/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4ba4986a-2fed-4bd7-b67b-8a905952dd20 checkm_output/bins/pm824/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:15:39 2017 # [ok]