# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 139 HTH_DeoR PF08220.7 57 9.3e-07 17.8 0.0 1 1 2e-07 1.6e-06 17.0 0.0 19 48 72 101 68 104 0.90 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 MarR PF01047.17 59 8.1e-07 18.1 0.0 1 1 3.4e-07 2.7e-06 16.5 0.0 13 55 63 105 60 106 0.93 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 Sigma70_r4_2 PF08281.7 54 9.8e-06 14.4 0.2 1 1 3.9e-06 3.1e-05 12.8 0.1 28 48 69 89 69 90 0.91 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 Fe_dep_repress PF01325.14 60 9.1e-07 18.2 0.0 1 1 2e-07 1.6e-06 17.4 0.0 23 52 68 97 66 102 0.92 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 LexA_DNA_bind PF01726.11 65 2.9e-05 13.0 0.0 1 1 6.4e-06 5.1e-05 12.2 0.0 26 57 68 98 50 104 0.87 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 Rrf2 PF02082.15 83 3.6e-05 13.3 0.0 1 1 6.3e-06 5.1e-05 12.8 0.0 7 59 49 101 44 104 0.81 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 HTH_27 PF13463.1 68 2.3e-05 14.1 0.0 1 1 6.7e-06 5.3e-05 12.9 0.0 22 54 71 103 66 109 0.83 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 GntR PF00392.16 64 4.9e-08 21.8 0.0 1 1 1e-08 8.2e-08 21.1 0.0 25 55 68 98 67 103 0.94 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 HTH_23 PF13384.1 50 1.9e-05 13.7 0.0 1 1 5.1e-06 4.1e-05 12.7 0.0 19 45 69 95 69 98 0.85 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 HTH_29 PF13551.1 112 1.7e-05 14.4 0.0 1 1 3.4e-06 2.7e-05 13.7 0.0 14 46 69 99 64 115 0.77 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 HTH_28 PF13518.1 52 7.4e-06 15.4 0.0 1 1 1.8e-06 1.4e-05 14.5 0.0 14 41 69 96 66 106 0.88 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 HTH_24 PF13412.1 48 3.1e-07 19.2 0.0 1 2 0.076 0.61 -1.0 0.0 26 37 41 52 38 54 0.79 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 HTH_24 PF13412.1 48 3.1e-07 19.2 0.0 2 2 1.5e-07 1.2e-06 17.3 0.0 17 47 67 97 66 98 0.92 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 FUR PF01475.14 120 2.1e-05 13.8 0.0 1 1 4e-06 3.2e-05 13.2 0.0 37 72 76 111 56 119 0.87 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 HTH_10 PF04967.7 53 7e-05 11.8 0.0 1 1 2.9e-05 0.00024 10.1 0.0 18 48 63 92 63 94 0.86 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 HTH_36 PF13730.1 55 1e-10 31.1 0.0 1 1 2.1e-11 1.7e-10 30.4 0.0 3 55 44 97 29 97 0.85 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 HTH_Tnp_ISL3 PF13542.1 52 5.8e-05 11.7 0.0 1 1 1.1e-05 9.1e-05 11.0 0.0 29 46 69 86 66 90 0.91 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 RP-C PF03428.8 177 1.8e-05 13.6 0.0 1 1 3.3e-06 2.7e-05 13.0 0.0 70 110 67 110 66 114 0.81 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 HTH_11 PF08279.7 55 1.5e-07 20.4 0.0 1 1 3.8e-08 3e-07 19.5 0.0 17 45 69 99 66 105 0.86 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 MarR_2 PF12802.2 62 8.5e-07 18.0 0.1 1 1 5e-07 4e-06 15.9 0.1 2 56 43 102 42 106 0.77 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 TrmB PF01978.14 68 3.2e-07 19.4 0.1 1 1 6.8e-08 5.5e-07 18.7 0.1 26 59 71 107 69 116 0.84 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_7 - 139 HTH_Crp_2 PF13545.1 76 1.1e-07 21.0 0.0 1 1 3.3e-08 2.7e-07 19.8 0.0 30 60 69 104 63 120 0.81 # 5767 # 6183 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/b1922490-ff42-49bb-9504-8995bf529c4d # Target file: checkm_output/bins/pm789/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm789/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b1922490-ff42-49bb-9504-8995bf529c4d checkm_output/bins/pm789/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:14:36 2017 # [ok]