# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 160 HTH_41 PF14502.1 48 9.4e-06 11.7 0.0 1 1 2.7e-05 2.7e-05 10.3 0.0 12 35 81 104 70 109 0.92 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_DeoR PF08220.7 57 7e-08 18.5 0.0 1 1 1.5e-07 1.5e-07 17.4 0.0 20 47 81 108 77 109 0.94 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_38 PF13936.1 44 2.4e-07 16.8 0.0 1 1 5.9e-07 5.9e-07 15.5 0.0 24 41 79 96 77 97 0.88 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 MarR PF01047.17 59 3.3e-08 19.7 0.0 1 1 7.9e-08 7.9e-08 18.5 0.0 19 49 77 107 62 110 0.93 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_Tnp_4 PF13613.1 53 5e-06 12.5 0.0 1 1 8.5e-06 8.5e-06 11.8 0.0 22 44 78 100 77 102 0.89 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 GntR PF00392.16 64 2.3e-08 19.9 0.0 1 1 4.2e-08 4.2e-08 19.1 0.0 27 58 78 109 70 114 0.89 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_3 PF01381.17 55 4.5e-08 19.4 0.4 1 1 8.6e-08 8.6e-08 18.5 0.0 12 31 78 97 77 103 0.91 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_23 PF13384.1 50 1e-07 18.1 0.0 1 1 2.3e-07 2.3e-07 16.9 0.0 24 39 82 97 81 105 0.89 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_7 PF02796.10 45 4.2e-07 16.3 0.0 1 2 0.0056 0.0056 3.1 0.0 6 27 37 57 16 58 0.80 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_7 PF02796.10 45 4.2e-07 16.3 0.0 2 2 2.1e-05 2.1e-05 10.9 0.0 27 43 81 97 79 99 0.90 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 RepL PF05732.6 165 6.5e-08 18.3 0.0 1 1 3.4e-07 3.4e-07 16.0 0.0 10 130 3 134 1 141 0.71 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_28 PF13518.1 52 2.4e-08 20.4 0.0 1 1 6.4e-08 6.4e-08 19.1 0.0 18 44 81 105 74 113 0.79 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_24 PF13412.1 48 4.9e-05 9.2 0.0 1 3 0.051 0.051 -0.4 0.7 36 43 11 18 10 20 0.84 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_24 PF13412.1 48 4.9e-05 9.2 0.0 2 3 0.064 0.064 -0.7 0.1 35 44 41 50 41 51 0.85 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_24 PF13412.1 48 4.9e-05 9.2 0.0 3 3 4.9e-05 4.9e-05 9.2 0.0 20 44 78 102 76 105 0.85 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_36 PF13730.1 55 2.4e-09 23.8 1.2 1 1 5.6e-09 5.6e-09 22.6 0.0 8 53 57 103 53 105 0.86 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_17 PF12728.2 51 7.2e-07 16.0 0.0 1 1 1.4e-06 1.4e-06 15.0 0.0 7 23 81 97 78 114 0.79 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_11 PF08279.7 55 5e-09 22.3 0.1 1 1 1.7e-08 1.7e-08 20.5 0.0 19 44 79 106 77 113 0.84 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 MarR_2 PF12802.2 62 6.5e-06 12.3 0.0 1 1 1.3e-05 1.3e-05 11.4 0.0 26 54 80 108 67 113 0.87 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 TrmB PF01978.14 68 2.1e-06 13.9 0.0 1 1 4.4e-06 4.4e-06 12.9 0.0 28 57 81 110 75 122 0.83 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_1 - 160 HTH_Crp_2 PF13545.1 76 1.2e-08 21.2 0.0 1 1 2.2e-08 2.2e-08 20.4 0.0 29 58 76 105 59 109 0.85 # 783 # 1262 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/fa2eb498-c51c-4d46-909d-ee78040e72a0 # Target file: checkm_output/bins/pm756/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm756/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fa2eb498-c51c-4d46-909d-ee78040e72a0 checkm_output/bins/pm756/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:13:48 2017 # [ok]