# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 186 HTH_IclR PF09339.5 52 1.6e-06 17.7 0.2 1 1 4.6e-07 5.9e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_6 - 101 HTH_22 PF13309.1 64 2.6e-05 14.0 0.0 1 1 8.2e-06 5.3e-05 13.0 0.0 46 61 7 22 6 24 0.92 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_11 - 186 HTH_22 PF13309.1 64 3.7e-05 13.6 1.5 1 1 2.4e-05 0.00015 11.6 0.1 35 63 156 179 143 180 0.76 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 186 HTH_40 PF14493.1 91 8.6e-05 12.8 0.6 1 1 2.1e-05 0.00028 11.2 0.1 7 32 152 177 147 183 0.89 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 186 HTH_38 PF13936.1 44 4e-07 19.6 1.4 1 1 5.9e-08 7.7e-07 18.7 0.0 9 41 147 179 145 182 0.93 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_6 - 101 HTH_8 PF02954.14 42 2e-05 14.2 0.0 1 1 2.9e-06 3.7e-05 13.3 0.0 23 37 8 22 7 22 0.92 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_6 - 101 HTH_Tnp_1 PF01527.15 76 3.2e-05 14.0 0.0 1 1 4.4e-06 5.8e-05 13.1 0.0 28 44 8 24 5 62 0.78 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_9 - 235 DDE_Tnp_1 PF01609.16 213 2.1e-17 53.4 0.2 1 1 4.6e-18 3e-17 52.8 0.2 103 210 13 160 5 163 0.87 # 5807 # 6511 # -1 # ID=1_9;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_13 - 201 DDE_Tnp_1 PF01609.16 213 1.2e-09 28.0 0.0 1 1 3.4e-10 2.2e-09 27.1 0.0 4 107 91 185 88 189 0.91 # 11368 # 11970 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_6 - 101 Phage_CI_repr PF07022.8 66 1.1e-05 15.5 0.0 1 1 1.1e-06 1.5e-05 15.1 0.0 16 34 7 24 2 60 0.91 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_6 - 101 P22_Cro PF14549.1 60 9.1e-05 12.3 0.0 1 1 1.3e-05 0.00017 11.4 0.0 13 29 7 23 5 29 0.87 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_11 - 186 HTH_Tnp_IS630 PF01710.11 120 1.2e-05 15.0 0.0 1 1 1.9e-06 2.5e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_6 - 101 HTH_23 PF13384.1 50 6.2e-07 19.1 0.0 1 1 2.7e-07 1.8e-06 17.7 0.0 22 37 8 23 7 32 0.94 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_11 - 186 HTH_23 PF13384.1 50 5.7e-06 16.0 0.3 1 1 8.8e-07 5.7e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 186 HTH_7 PF02796.10 45 3e-14 42.7 1.1 1 1 1e-14 6.7e-14 41.6 0.1 1 44 141 181 141 182 0.97 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_6 - 101 HTH_7 PF02796.10 45 1.3e-05 15.1 0.0 1 1 4.2e-06 2.8e-05 14.1 0.0 25 40 7 22 6 24 0.93 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_11 - 186 HTH_29 PF13551.1 112 1.4e-05 15.3 0.6 1 2 0.049 0.32 1.3 0.2 24 46 114 136 88 153 0.67 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 186 HTH_29 PF13551.1 112 1.4e-05 15.3 0.6 2 2 2e-05 0.00013 12.2 0.0 4 35 151 181 148 184 0.90 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_6 - 101 HTH_29 PF13551.1 112 3.4e-05 14.1 0.0 1 1 1.4e-05 9e-05 12.7 0.0 16 34 7 25 2 99 0.75 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_6 - 101 HTH_28 PF13518.1 52 4e-07 20.1 0.0 1 1 1.5e-07 9.6e-07 18.9 0.0 16 33 7 24 5 26 0.93 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_11 - 186 HTH_28 PF13518.1 52 1.8e-05 14.8 0.0 1 1 8.5e-06 5.5e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_6 - 101 HTH_Tnp_1_2 PF13022.1 142 0.00013 11.9 0.0 1 1 1.8e-05 0.00024 11.0 0.0 38 61 7 30 3 37 0.88 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_6 - 101 MerR PF00376.18 38 1.8e-05 14.4 0.0 1 1 2.6e-06 3.4e-05 13.5 0.0 3 19 7 23 6 23 0.94 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_6 - 101 HTH_17 PF12728.2 51 5.8e-14 42.2 0.3 1 2 8.1e-11 1.1e-09 28.6 0.0 1 22 3 24 3 59 0.80 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_6 - 101 HTH_17 PF12728.2 51 5.8e-14 42.2 0.3 2 2 1.4e-05 0.00018 11.9 0.3 28 51 76 99 73 99 0.92 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_11 - 186 TrmB PF01978.14 68 7.2e-06 15.8 0.0 1 1 1.1e-06 1.5e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 186 HTH_20 PF12840.2 61 2.6e-07 20.5 0.2 1 2 0.0037 0.048 3.6 0.0 33 52 8 27 4 28 0.91 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 186 HTH_20 PF12840.2 61 2.6e-07 20.5 0.2 2 2 9.1e-06 0.00012 12.0 0.1 3 43 110 177 108 180 0.91 # 9673 # 10230 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_13 - 201 Dimerisation PF08100.6 51 1.5e-05 14.9 0.4 1 2 1.1e-05 0.00014 11.8 0.0 16 47 29 65 27 66 0.80 # 11368 # 11970 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_13 - 201 Dimerisation PF08100.6 51 1.5e-05 14.9 0.4 2 2 0.056 0.73 -0.1 0.0 26 37 144 154 136 158 0.81 # 11368 # 11970 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 1_6 - 101 Phage_AlpA PF05930.7 51 1.6e-14 43.5 0.4 1 2 5.6e-08 7.3e-07 19.0 0.0 2 23 2 23 1 30 0.91 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_6 - 101 Phage_AlpA PF05930.7 51 1.6e-14 43.5 0.4 2 2 4.2e-09 5.5e-08 22.6 0.4 28 51 73 95 67 95 0.93 # 4303 # 4605 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/e2f9d2da-1b8a-4c97-ac0e-b2d91d6c5430 # Target file: checkm_output/bins/pm750/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm750/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e2f9d2da-1b8a-4c97-ac0e-b2d91d6c5430 checkm_output/bins/pm750/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:13:45 2017 # [ok]