# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_41 - 354 ABC_tran PF00005.22 137 1.6e-06 20.5 0.0 1 1 7e-08 3.7e-06 19.3 0.0 14 58 180 222 171 295 0.82 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_33 - 262 BSP PF04450.7 205 0.00013 13.5 0.0 1 1 3.9e-06 0.0002 12.8 0.0 94 114 71 91 51 107 0.74 # 19359 # 20144 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_22 - 68 HTH_WhiA PF02650.9 85 6.8e-05 15.3 0.0 1 1 1.6e-06 8.3e-05 15.0 0.0 40 75 2 37 1 51 0.92 # 15085 # 15288 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.382 1_12 - 271 Sigma54_activat PF00158.21 168 1.8e-05 16.2 0.0 1 1 6.1e-07 3.2e-05 15.4 0.0 7 44 10 47 5 78 0.81 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_41 - 354 FtsK_SpoIIIE PF01580.13 205 4.7e-05 14.9 0.0 1 1 2.2e-06 0.00011 13.6 0.0 37 58 175 197 149 199 0.77 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 MobB PF03205.9 140 4.4e-05 15.2 0.0 1 1 1.5e-06 7.8e-05 14.4 0.0 5 39 182 215 179 221 0.83 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_4 - 108 TIGR03302 TIGR03302 239 0.00013 13.2 0.3 1 1 3.6e-06 0.00019 12.6 0.1 4 48 28 71 25 82 0.89 # 3128 # 3451 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.364 1_7 - 327 TetR_N PF00440.18 47 5.8e-05 14.7 0.0 1 1 2.6e-06 0.00014 13.5 0.0 16 36 147 167 146 168 0.95 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_41 - 354 AAA_19 PF13245.1 76 0.00031 12.5 0.0 1 1 1.1e-05 0.00058 11.6 0.0 10 36 179 202 173 218 0.82 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_12 - 271 CbiA PF01656.18 195 9.2e-07 20.4 0.0 1 1 2.6e-08 1.3e-06 19.9 0.0 2 116 28 126 27 178 0.82 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_7 - 327 Sigma70_r4_2 PF08281.7 54 0.00014 13.3 0.0 1 1 1.1e-05 0.00028 12.4 0.0 25 52 146 173 144 174 0.93 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_1 - 83 Sigma70_r4_2 PF08281.7 54 0.0003 12.3 0.0 1 1 2e-05 0.00052 11.5 0.0 26 44 25 43 21 46 0.91 # 1082 # 1330 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.406 1_52 - 348 Rep_3 PF01051.16 222 1e-47 154.5 0.2 1 1 2.5e-49 1.3e-47 154.2 0.2 2 222 14 247 13 247 0.89 # 36709 # 37752 # -1 # ID=1_52;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_41 - 354 AAA_23 PF13476.1 202 0.0001 14.7 0.8 1 1 4.2e-06 0.00022 13.5 0.7 23 40 181 198 154 201 0.88 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 Zeta_toxin PF06414.7 201 8.5e-05 13.7 0.0 1 1 2.6e-06 0.00013 13.0 0.0 14 49 175 211 164 222 0.85 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA_30 PF13604.1 196 8.5e-05 14.2 0.0 1 1 2.7e-06 0.00014 13.4 0.0 21 46 180 205 170 214 0.84 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_51 - 168 GerE PF00196.14 58 5.5e-08 24.1 0.2 1 2 4.7e-09 2.5e-07 22.0 0.0 2 50 24 72 23 79 0.91 # 36205 # 36708 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.361 1_51 - 168 GerE PF00196.14 58 5.5e-08 24.1 0.2 2 2 0.065 3.4 -0.8 0.0 10 24 106 120 105 128 0.86 # 36205 # 36708 # -1 # ID=1_51;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.361 1_40 - 674 TraG-D_C PF12696.2 128 9.7e-30 95.1 0.1 1 1 3.3e-31 1.7e-29 94.3 0.1 2 126 468 589 467 591 0.88 # 24645 # 26666 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_41 - 354 AAA_21 PF13304.1 303 2.4e-06 19.7 0.0 1 1 1.3e-07 6.9e-06 18.1 0.0 3 32 181 209 180 243 0.71 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_7 - 327 Sigma70_r4 PF04545.11 50 8.3e-06 17.1 0.0 1 1 3.1e-07 1.6e-05 16.2 0.0 6 36 131 163 131 165 0.91 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_41 - 354 AAA PF00004.24 132 0.00049 12.3 0.0 1 1 1.5e-05 0.00078 11.6 0.0 3 33 182 214 180 259 0.66 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_7 - 327 KorB PF08535.5 93 0.00011 14.4 0.0 1 1 5.8e-06 0.0003 13.0 0.0 1 61 145 206 145 219 0.77 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_41 - 354 AAA_22 PF13401.1 131 8.2e-05 14.8 0.0 1 1 3.2e-06 0.00017 13.7 0.0 8 46 181 213 177 244 0.84 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA_29 PF13555.1 62 8.9e-07 20.4 0.0 1 1 6.4e-08 3.3e-06 18.6 0.0 17 51 174 205 167 210 0.76 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 SRP54 PF00448.17 196 0.00028 12.3 0.0 1 1 8.6e-06 0.00045 11.7 0.0 4 30 180 206 177 213 0.84 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA_28 PF13521.1 163 0.0004 12.3 0.0 1 1 1.5e-05 0.00079 11.4 0.0 3 23 181 204 179 220 0.75 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_7 - 327 HTH_3 PF01381.17 55 1.3e-05 17.0 0.0 1 1 7.2e-07 3.8e-05 15.5 0.0 7 37 145 176 138 182 0.86 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 327 HTH_23 PF13384.1 50 9.9e-06 17.2 0.1 1 2 0.094 4.9 -0.9 0.0 6 16 94 104 93 111 0.78 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 327 HTH_23 PF13384.1 50 9.9e-06 17.2 0.1 2 2 1e-06 5.3e-05 14.9 0.0 15 39 145 169 134 179 0.79 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_41 - 354 Mg_chelatase PF01078.16 207 0.00018 12.7 0.0 1 1 5.3e-06 0.00028 12.1 0.0 24 60 179 215 169 257 0.75 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_7 - 327 Sigma70_r3 PF04539.11 78 0.00034 12.5 0.9 1 2 0.0002 0.01 7.8 0.0 22 46 149 173 148 176 0.92 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 327 Sigma70_r3 PF04539.11 78 0.00034 12.5 0.9 2 2 0.018 0.93 1.5 0.3 52 76 213 237 208 239 0.85 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 327 IF2_N PF04760.10 54 0.00029 12.5 0.3 1 3 0.055 2.9 -0.3 0.0 1 26 1 25 1 32 0.86 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 327 IF2_N PF04760.10 54 0.00029 12.5 0.3 2 3 0.00014 0.0074 8.0 0.0 2 25 146 169 145 202 0.83 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 327 IF2_N PF04760.10 54 0.00029 12.5 0.3 3 3 0.06 3.1 -0.4 0.0 32 47 273 288 271 290 0.77 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_41 - 354 AAA_5 PF07728.9 139 5.1e-05 15.0 0.0 1 1 2e-06 0.0001 14.0 0.0 3 33 181 211 179 224 0.86 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_33 - 262 SprT-like PF10263.4 157 4.7e-23 73.5 0.0 1 1 1.3e-24 6.8e-23 73.0 0.0 1 126 11 147 11 257 0.87 # 19359 # 20144 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_40 - 674 TrwB_AAD_bind PF10412.4 386 1.1e-18 58.9 0.1 1 2 0.00012 0.003 8.1 0.0 75 131 248 308 242 321 0.75 # 24645 # 26666 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_40 - 674 TrwB_AAD_bind PF10412.4 386 1.1e-18 58.9 0.1 2 2 5.4e-17 1.4e-15 48.7 0.0 167 374 385 598 377 610 0.77 # 24645 # 26666 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_41 - 354 TrwB_AAD_bind PF10412.4 386 0.00039 11.0 0.0 1 1 2.5e-05 0.00066 10.3 0.0 17 48 179 210 170 214 0.77 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_12 - 271 TIGR01968 TIGR01968 261 0.00066 10.7 2.0 1 3 9.3e-05 0.0049 7.9 0.1 3 23 26 46 24 61 0.84 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_12 - 271 TIGR01968 TIGR01968 261 0.00066 10.7 2.0 2 3 0.08 4.2 -1.8 0.0 175 227 98 150 77 183 0.60 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_12 - 271 TIGR01968 TIGR01968 261 0.00066 10.7 2.0 3 3 0.0082 0.42 1.5 0.2 71 115 223 267 210 269 0.80 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_12 - 271 AAA_18 PF13238.1 129 0.0001 14.6 0.0 1 2 9.8e-06 0.00051 12.4 0.0 2 93 29 125 28 144 0.62 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_12 - 271 AAA_18 PF13238.1 129 0.0001 14.6 0.0 2 2 0.075 3.9 -0.2 0.0 70 91 206 227 160 264 0.75 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_22 - 68 UBX PF00789.15 82 0.00023 13.2 0.1 1 1 5.2e-06 0.00027 13.0 0.1 21 63 11 53 8 62 0.90 # 15085 # 15288 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.382 1_1 - 83 MerR-DNA-bind PF09278.6 65 0.00031 13.2 0.0 1 1 8.1e-06 0.00042 12.7 0.0 13 38 24 49 15 56 0.89 # 1082 # 1330 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.406 1_7 - 327 HTH_24 PF13412.1 48 0.0001 13.7 0.0 1 1 5.5e-06 0.00029 12.3 0.0 15 38 145 168 136 170 0.89 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_1 - 83 HTH_31 PF13560.1 64 0.0001 14.5 0.0 1 1 2.5e-06 0.00013 14.2 0.0 3 31 14 42 12 47 0.88 # 1082 # 1330 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.406 1_41 - 354 T2SE PF00437.15 272 5.4e-56 181.4 0.0 1 1 2.6e-57 6.8e-56 181.0 0.0 5 265 20 323 16 328 0.93 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_46 - 841 T2SE PF00437.15 272 0.00028 11.8 0.0 1 1 2e-05 0.00053 10.9 0.0 114 154 388 453 330 461 0.65 # 31534 # 34056 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_41 - 354 NACHT PF05729.7 166 6.8e-05 14.5 0.0 1 1 3e-06 0.00016 13.4 0.0 4 23 181 200 179 207 0.88 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA_17 PF13207.1 121 1.6e-05 17.7 0.0 1 1 1.2e-06 3.1e-05 16.8 0.0 4 32 182 212 180 265 0.76 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_12 - 271 AAA_17 PF13207.1 121 0.00036 13.4 0.0 1 1 3e-05 0.00077 12.3 0.0 2 28 28 55 27 146 0.60 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_41 - 354 Pox_A32 PF04665.7 241 1.3e-05 16.5 0.0 1 1 4e-07 2.1e-05 15.9 0.0 4 45 169 209 166 241 0.71 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 AAA_14 PF13173.1 128 9.3e-05 14.3 0.0 1 1 6.3e-06 0.00016 13.5 0.0 6 47 181 220 177 276 0.73 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_12 - 271 AAA_14 PF13173.1 128 0.00021 13.2 0.3 1 1 1.9e-05 0.00049 12.0 0.0 4 85 27 102 24 130 0.56 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_1 - 83 HTH_Tnp_ISL3 PF13542.1 52 4.9e-05 14.5 0.0 1 1 1.2e-06 6.4e-05 14.1 0.0 14 46 13 44 9 45 0.90 # 1082 # 1330 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.406 1_41 - 354 AAA_33 PF13671.1 143 2.1e-05 16.4 0.0 1 1 6.9e-07 3.6e-05 15.7 0.0 3 21 181 199 180 268 0.82 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_40 - 674 T4SS-DNA_transf PF02534.9 469 5.7e-96 313.8 1.4 1 2 9.2e-29 4.8e-27 86.5 0.0 4 103 109 207 106 220 0.94 # 24645 # 26666 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_40 - 674 T4SS-DNA_transf PF02534.9 469 5.7e-96 313.8 1.4 2 2 7.1e-71 3.7e-69 225.4 1.2 104 459 242 641 232 649 0.87 # 24645 # 26666 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_12 - 271 RNA_helicase PF00910.17 107 0.00028 13.1 0.1 1 1 1.4e-05 0.00071 11.8 0.1 1 26 28 53 28 123 0.70 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_41 - 354 ATP_bind_1 PF03029.12 238 4.6e-05 15.0 0.0 1 1 1.4e-06 7.2e-05 14.3 0.0 2 25 183 206 182 211 0.86 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_3 - 194 DDE_Tnp_IS240 PF13610.1 140 0.00011 14.1 0.9 1 2 2.8e-05 0.0015 10.5 0.3 16 80 10 74 7 126 0.79 # 2515 # 3096 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.376 1_3 - 194 DDE_Tnp_IS240 PF13610.1 140 0.00011 14.1 0.9 2 2 0.0089 0.46 2.4 0.0 60 93 141 174 101 180 0.74 # 2515 # 3096 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.376 1_41 - 354 PduV-EutP PF10662.4 143 0.00024 12.6 0.0 1 2 0.024 1.2 0.6 0.0 106 135 6 35 1 37 0.83 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_41 - 354 PduV-EutP PF10662.4 143 0.00024 12.6 0.0 2 2 4.9e-05 0.0025 9.3 0.0 5 23 181 199 178 221 0.83 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_37 - 727 Toprim_Crpt PF13342.1 62 5.3e-28 88.5 2.2 1 2 0.046 2.4 -0.0 0.0 33 48 393 408 391 411 0.87 # 21577 # 23757 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_37 - 727 Toprim_Crpt PF13342.1 62 5.3e-28 88.5 2.2 2 2 1e-28 5.2e-27 85.3 1.7 1 61 661 722 661 723 0.98 # 21577 # 23757 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_7 - 327 HTH_17 PF12728.2 51 0.00023 13.4 0.0 1 1 1.4e-05 0.00073 11.8 0.0 2 22 148 168 147 196 0.87 # 4396 # 5376 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_1 - 83 Sigma70_ECF PF07638.6 185 0.00015 13.4 0.0 1 1 3.5e-06 0.00018 13.2 0.0 132 171 6 45 3 58 0.88 # 1082 # 1330 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.406 1_46 - 841 AAA_10 PF12846.2 304 1e-23 76.2 0.0 1 1 5.5e-25 1.4e-23 75.7 0.0 1 291 427 727 427 734 0.82 # 31534 # 34056 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.413 1_41 - 354 AAA_10 PF12846.2 304 1.8e-05 16.2 0.0 1 1 1.3e-06 3.5e-05 15.3 0.0 4 36 180 212 178 215 0.88 # 26688 # 27749 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.390 1_12 - 271 IstB_IS21 PF01695.12 178 3.7e-06 18.4 0.0 1 1 1.2e-07 6.3e-06 17.7 0.0 41 69 19 47 5 56 0.89 # 7452 # 8264 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/fa70b259-8f07-4538-9d1c-fb6cb94ff34c # Target file: checkm_output/bins/pm746/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm746/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fa70b259-8f07-4538-9d1c-fb6cb94ff34c checkm_output/bins/pm746/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:13:38 2017 # [ok]