# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 654 KaiC PF06745.8 227 2.6e-05 13.4 0.0 1 1 4e-06 5.2e-05 12.4 0.0 18 53 256 291 252 293 0.93 # 4888 # 6849 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 654 FtsK_SpoIIIE PF01580.13 205 8.3e-05 12.1 0.0 1 1 1.4e-05 0.00019 11.0 0.0 10 59 227 279 220 282 0.81 # 4888 # 6849 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.637 1_2 - 563 DUF3584 PF12128.3 1201 0.042 1.0 22.7 1 1 0.033 0.43 -2.3 21.1 599 745 321 464 312 468 0.72 # 1215 # 2903 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_5 - 654 TraG-D_C PF12696.2 128 1e-09 28.4 0.0 1 1 1.3e-10 1.7e-09 27.6 0.0 4 127 468 591 465 592 0.79 # 4888 # 6849 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.637 1_6 - 244 Replic_Relax PF13814.1 191 2.2e-09 27.5 0.0 1 1 4.9e-10 6.3e-09 25.9 0.0 1 174 25 179 25 187 0.81 # 6849 # 7580 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.649 1_6 - 244 HTH_27 PF13463.1 68 8.9e-06 16.1 0.0 1 2 5.9e-05 0.00077 9.9 0.0 36 59 51 75 25 85 0.78 # 6849 # 7580 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.649 1_6 - 244 HTH_27 PF13463.1 68 8.9e-06 16.1 0.0 2 2 0.0047 0.061 3.8 0.0 6 28 133 157 129 165 0.90 # 6849 # 7580 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.649 1_5 - 654 TrwB_AAD_bind PF10412.4 386 3.2e-08 22.5 0.0 1 2 4.9e-07 6.4e-06 14.9 0.0 14 57 256 300 247 313 0.85 # 4888 # 6849 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 654 TrwB_AAD_bind PF10412.4 386 3.2e-08 22.5 0.0 2 2 0.00038 0.005 5.4 0.0 296 368 520 593 468 607 0.86 # 4888 # 6849 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.637 1_6 - 244 MarR_2 PF12802.2 62 1.2e-05 15.1 0.5 1 1 2.2e-06 2.8e-05 13.8 0.5 15 62 29 75 13 75 0.85 # 6849 # 7580 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.649 1_5 - 654 AAA_10 PF12846.2 304 1.2e-16 51.0 0.0 1 1 1.1e-16 1.4e-15 47.5 0.0 3 294 259 540 257 547 0.79 # 4888 # 6849 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.637 1_2 - 563 AAA_13 PF13166.1 712 0.0031 5.9 19.4 1 2 0.00097 0.013 3.9 4.4 391 458 308 377 296 385 0.61 # 1215 # 2903 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_2 - 563 AAA_13 PF13166.1 712 0.0031 5.9 19.4 2 2 6.1e-05 0.00079 7.9 7.1 95 193 397 493 393 500 0.75 # 1215 # 2903 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/fcd0bc9c-7cda-4199-9e1d-72378f0901e9 # Target file: checkm_output/bins/pm732/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm732/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fcd0bc9c-7cda-4199-9e1d-72378f0901e9 checkm_output/bins/pm732/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:13:19 2017 # [ok]