# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 186 HTH_IclR PF09339.5 52 1.5e-06 17.7 0.2 1 1 4.6e-07 5.5e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_4 - 186 HTH_22 PF13309.1 64 2.9e-05 13.8 1.2 1 1 2.4e-05 0.00014 11.6 0.1 35 63 156 179 143 180 0.76 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 141 HTH_22 PF13309.1 64 5.3e-05 12.9 0.1 1 1 2e-05 0.00012 11.8 0.1 44 63 5 24 2 25 0.89 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 1_2 - 141 DUF134 PF02001.11 106 1.3e-05 15.0 0.1 1 1 1.8e-06 2.2e-05 14.3 0.1 59 104 5 50 2 52 0.89 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 1_4 - 186 HTH_40 PF14493.1 91 7.7e-05 12.9 0.6 1 1 2.1e-05 0.00026 11.2 0.1 7 32 152 177 147 183 0.89 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_4 - 186 HTH_38 PF13936.1 44 7.1e-07 18.7 0.0 1 1 5.9e-08 7.1e-07 18.7 0.0 9 41 147 179 145 182 0.93 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 141 HTH_8 PF02954.14 42 2e-05 14.1 0.0 1 1 3.4e-06 4.1e-05 13.1 0.0 19 37 4 22 2 24 0.89 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 1_2 - 141 NUMOD1 PF07453.8 37 1.1e-06 18.3 0.0 1 1 3.2e-07 3.8e-06 16.7 0.0 18 37 5 24 4 24 0.94 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 1_2 - 141 HTH_Tnp_IS630 PF01710.11 120 4.8e-06 16.2 0.0 1 1 1.1e-06 6.3e-06 15.8 0.0 20 62 5 49 2 90 0.87 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 1_4 - 186 HTH_Tnp_IS630 PF01710.11 120 1.1e-05 15.0 0.0 1 1 3.9e-06 2.3e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_4 - 186 HTH_23 PF13384.1 50 5.3e-06 16.0 0.3 1 1 8.8e-07 5.3e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 141 HTH_23 PF13384.1 50 8.8e-06 15.3 0.0 1 1 3.5e-06 2.1e-05 14.1 0.0 18 38 4 24 1 26 0.87 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 1_4 - 186 HTH_7 PF02796.10 45 2.2e-14 43.1 0.5 1 1 1e-14 6.2e-14 41.6 0.1 1 44 141 181 141 182 0.97 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 141 HTH_7 PF02796.10 45 1.3e-05 15.0 0.3 1 1 6.4e-06 3.8e-05 13.5 0.1 23 43 5 25 4 27 0.89 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 1_4 - 186 HTH_29 PF13551.1 112 1.3e-05 15.3 0.6 1 2 0.049 0.29 1.3 0.2 24 46 114 136 88 153 0.67 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_4 - 186 HTH_29 PF13551.1 112 1.3e-05 15.3 0.6 2 2 2e-05 0.00012 12.2 0.0 4 35 151 181 148 184 0.90 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 141 HTH_29 PF13551.1 112 5.6e-05 13.2 0.1 1 1 3.2e-05 0.00019 11.5 0.0 12 34 4 25 1 33 0.90 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 1_2 - 141 DUF3853 PF12964.2 96 7.4e-06 15.7 0.1 1 1 1.1e-06 1.3e-05 14.9 0.1 48 90 6 50 3 55 0.86 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 1_2 - 141 HTH_28 PF13518.1 52 1.8e-06 17.9 0.0 1 1 1.9e-06 1.2e-05 15.3 0.0 13 34 4 25 2 29 0.91 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 1_4 - 186 HTH_28 PF13518.1 52 1.6e-05 14.9 0.0 1 1 8.5e-06 5.1e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 141 HTH_17 PF12728.2 51 3.1e-11 33.4 0.0 1 1 4.8e-12 5.7e-11 32.5 0.0 3 37 5 43 4 53 0.82 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 1_4 - 186 TrmB PF01978.14 68 6.9e-06 15.7 0.0 1 1 1.1e-06 1.4e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_4 - 186 HTH_20 PF12840.2 61 5.1e-07 19.4 0.1 1 2 0.0081 0.097 2.5 0.0 33 52 8 27 6 28 0.90 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_4 - 186 HTH_20 PF12840.2 61 5.1e-07 19.4 0.1 2 2 9.1e-06 0.00011 12.0 0.1 3 43 110 177 108 180 0.91 # 1996 # 2553 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 141 Phage_AlpA PF05930.7 51 5.2e-05 12.9 0.0 1 1 8e-06 9.6e-05 12.1 0.0 4 28 4 28 1 29 0.88 # 188 # 610 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.414 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/341b4429-9b04-4b3b-8597-5d139a166dd6 # Target file: checkm_output/bins/pm729/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm729/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/341b4429-9b04-4b3b-8597-5d139a166dd6 checkm_output/bins/pm729/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:13:12 2017 # [ok]