# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 655 KaiC PF06745.8 227 3e-05 13.4 0.0 1 1 4e-06 6e-05 12.4 0.0 18 53 256 291 252 293 0.93 # 8222 # 10186 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_1 - 186 HTH_IclR PF09339.5 52 1.9e-06 17.7 0.2 1 1 4.6e-07 6.9e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 186 HTH_22 PF13309.1 64 3.6e-05 13.8 1.2 1 1 1.2e-05 0.00018 11.6 0.1 35 63 156 179 143 180 0.76 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_12 - 655 FtsK_SpoIIIE PF01580.13 205 0.00013 11.7 0.0 1 1 2.4e-05 0.00036 10.2 0.0 14 59 231 279 220 282 0.78 # 8222 # 10186 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_1 - 186 HTH_40 PF14493.1 91 9.6e-05 12.9 0.6 1 1 2.1e-05 0.00032 11.2 0.1 7 32 152 177 147 183 0.89 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 186 HTH_38 PF13936.1 44 8.8e-07 18.7 0.0 1 1 5.9e-08 8.8e-07 18.7 0.0 9 41 147 179 145 182 0.93 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 244 MarR PF01047.17 59 2.2e-05 14.4 0.0 1 1 2.9e-06 4.3e-05 13.5 0.0 36 59 53 76 25 76 0.94 # 10186 # 10917 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_9 - 562 DUF3584 PF12128.3 1201 0.02 2.3 22.2 1 2 7.8e-05 0.0012 6.4 3.2 598 657 320 379 313 385 0.90 # 4555 # 6240 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_9 - 562 DUF3584 PF12128.3 1201 0.02 2.3 22.2 2 2 0.0027 0.04 1.3 11.3 608 673 399 464 394 471 0.82 # 4555 # 6240 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_13 - 244 PadR PF03551.9 75 3.4e-05 13.9 0.0 1 1 7.1e-06 0.00011 12.3 0.0 34 69 51 85 41 89 0.93 # 10186 # 10917 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_12 - 655 TraG-D_C PF12696.2 128 7.4e-10 29.0 0.0 1 1 8.3e-11 1.2e-09 28.3 0.0 1 127 465 591 465 592 0.79 # 8222 # 10186 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_13 - 244 Replic_Relax PF13814.1 191 6.1e-10 29.5 0.0 1 1 1.1e-10 1.6e-09 28.1 0.0 1 174 25 179 25 186 0.81 # 10186 # 10917 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_13 - 244 HTH_27 PF13463.1 68 7.2e-07 19.8 0.0 1 2 7.8e-06 0.00012 12.7 0.0 35 60 50 76 24 85 0.78 # 10186 # 10917 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_13 - 244 HTH_27 PF13463.1 68 7.2e-07 19.8 0.0 2 2 0.0025 0.038 4.7 0.0 6 28 133 157 129 161 0.88 # 10186 # 10917 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_1 - 186 HTH_Tnp_IS630 PF01710.11 120 1.4e-05 15.0 0.0 1 1 1.9e-06 2.9e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 186 HTH_23 PF13384.1 50 6.6e-06 16.0 0.3 1 1 4.4e-07 6.6e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 186 HTH_7 PF02796.10 45 2.7e-14 43.1 0.5 1 1 5.1e-15 7.7e-14 41.6 0.1 1 44 141 181 141 182 0.97 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 186 HTH_29 PF13551.1 112 1.6e-05 15.3 0.6 1 2 0.025 0.37 1.3 0.2 24 46 114 136 88 153 0.67 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 186 HTH_29 PF13551.1 112 1.6e-05 15.3 0.6 2 2 1e-05 0.00015 12.2 0.0 4 35 151 181 148 184 0.90 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_12 - 655 TrwB_AAD_bind PF10412.4 386 1.5e-07 20.5 0.0 1 2 4.9e-07 7.4e-06 14.9 0.0 14 57 256 300 247 313 0.85 # 8222 # 10186 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_12 - 655 TrwB_AAD_bind PF10412.4 386 1.5e-07 20.5 0.0 2 2 0.0015 0.022 3.5 0.0 296 368 520 593 426 607 0.84 # 8222 # 10186 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_1 - 186 HTH_28 PF13518.1 52 2e-05 14.9 0.0 1 1 4.2e-06 6.4e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 244 MarR_2 PF12802.2 62 5.4e-06 16.3 0.7 1 1 7.3e-07 1.1e-05 15.4 0.3 15 62 29 75 5 75 0.82 # 10186 # 10917 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_1 - 186 TrmB PF01978.14 68 8.6e-06 15.7 0.0 1 1 2.3e-06 1.7e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 244 TrmB PF01978.14 68 0.00011 12.1 0.1 1 1 6e-05 0.00045 10.2 0.0 23 55 34 67 28 72 0.85 # 10186 # 10917 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_12 - 655 AAA_10 PF12846.2 304 4.8e-16 49.2 0.0 1 1 4.5e-16 6.7e-15 45.4 0.0 3 293 259 539 257 547 0.78 # 8222 # 10186 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_1 - 186 HTH_20 PF12840.2 61 6.4e-07 19.4 0.1 1 2 0.0081 0.12 2.5 0.0 33 52 8 27 6 28 0.90 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 186 HTH_20 PF12840.2 61 6.4e-07 19.4 0.1 2 2 9.1e-06 0.00014 12.0 0.1 3 43 110 177 108 180 0.91 # 158 # 715 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_9 - 562 AAA_13 PF13166.1 712 0.061 1.8 21.5 1 2 0.001 0.016 3.8 4.6 406 458 325 377 302 386 0.53 # 4555 # 6240 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_9 - 562 AAA_13 PF13166.1 712 0.061 1.8 21.5 2 2 0.00098 0.015 3.9 8.8 83 158 399 458 382 495 0.50 # 4555 # 6240 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/fa19635f-7e45-43f3-9f2a-b1c944b8febd # Target file: checkm_output/bins/pm725/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm725/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fa19635f-7e45-43f3-9f2a-b1c944b8febd checkm_output/bins/pm725/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:13:09 2017 # [ok]