# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 234 Cons_hypoth95 PF03602.10 183 6e-05 15.4 0.0 1 2 0.00015 0.016 7.5 0.0 113 170 19 78 12 86 0.75 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_13 - 234 Cons_hypoth95 PF03602.10 183 6e-05 15.4 0.0 2 2 0.00051 0.051 5.8 0.0 41 60 169 188 157 225 0.74 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_4 - 370 TrkA_N PF02254.13 116 2.4e-05 17.3 0.0 1 1 3.9e-07 4e-05 16.6 0.0 1 46 190 237 190 279 0.85 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_91 - 186 HTH_IclR PF09339.5 52 1.2e-05 17.7 0.2 1 1 4.6e-07 4.6e-05 15.9 0.0 15 40 155 180 151 181 0.85 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_1 - 174 HHH_3 PF12836.2 65 4.7e-05 16.2 0.0 1 1 1.3e-06 0.00013 14.8 0.0 14 57 45 88 43 90 0.95 # 3 # 524 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.523 1_91 - 186 HTH_22 PF13309.1 64 0.00029 13.6 1.5 1 1 1.2e-05 0.0012 11.6 0.1 35 63 156 179 143 180 0.76 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_4 - 370 ADH_N PF08240.7 109 7.8e-30 95.8 2.5 1 1 7.7e-32 7.8e-30 95.8 2.5 2 108 28 154 27 155 0.92 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_9 - 425 Cdd1 PF11731.3 93 0.00043 13.2 0.0 1 1 8.9e-06 0.0009 12.1 0.0 10 47 178 215 139 227 0.84 # 5839 # 7113 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.574 1_1 - 174 HHH_5 PF14520.1 60 7.3e-05 15.9 0.0 1 1 1.5e-06 0.00015 14.8 0.0 6 49 46 86 43 90 0.91 # 3 # 524 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.523 1_52 - 880 FtsK_SpoIIIE PF01580.13 205 0.00012 14.5 0.0 1 1 2.7e-06 0.00027 13.3 0.0 39 63 480 506 466 508 0.85 # 33491 # 36130 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_91 - 186 HTH_40 PF14493.1 91 0.00066 12.8 0.6 1 1 2.1e-05 0.0022 11.2 0.1 7 32 152 177 147 183 0.89 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_91 - 186 HTH_38 PF13936.1 44 3.1e-06 19.6 1.4 1 1 1.2e-07 6e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_6 - 207 HTH_38 PF13936.1 44 0.0011 11.5 0.1 1 1 2.2e-05 0.0011 11.5 0.1 13 39 172 199 164 202 0.82 # 3548 # 4168 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_6 - 207 SpoIIID PF12116.3 82 0.00086 12.2 1.5 1 3 0.011 1.1 2.2 0.1 34 71 109 147 102 159 0.77 # 3548 # 4168 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_6 - 207 SpoIIID PF12116.3 82 0.00086 12.2 1.5 2 3 0.088 8.9 -0.7 0.2 59 78 150 169 129 173 0.83 # 3548 # 4168 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_6 - 207 SpoIIID PF12116.3 82 0.00086 12.2 1.5 3 3 0.0002 0.02 7.8 0.1 18 38 179 199 167 203 0.85 # 3548 # 4168 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 2_4 - 370 2-Hacid_dh_C PF02826.14 178 0.00072 11.6 0.1 1 1 1.3e-05 0.0013 10.8 0.1 36 73 187 225 176 237 0.82 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_7 - 209 UDPG_MGDP_dh_N PF03721.9 185 2.5e-05 16.7 0.0 1 2 0.079 8 -1.3 0.0 14 36 22 44 21 53 0.82 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 209 UDPG_MGDP_dh_N PF03721.9 185 2.5e-05 16.7 0.0 2 2 7.9e-07 8e-05 15.0 0.0 66 162 90 185 79 190 0.77 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_2 - 93 HTH_39 PF14090.1 70 0.00046 12.6 0.0 1 1 7.7e-06 0.00078 11.9 0.0 5 36 7 38 5 50 0.88 # 984 # 1262 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_68 - 1754 AAA_19 PF13245.1 76 4.3e-07 22.6 0.3 1 1 2e-08 2e-06 20.5 0.3 5 75 981 1048 976 1049 0.72 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_7 - 209 CbiA PF01656.18 195 7e-11 34.8 0.2 1 1 3.6e-12 3.6e-10 32.5 0.2 1 190 5 170 5 178 0.64 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_89 - 235 rve PF00665.21 120 3.3e-13 42.7 0.1 1 2 0.015 1.5 1.9 0.0 78 102 27 49 6 54 0.84 # 72945 # 73649 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_89 - 235 rve PF00665.21 120 3.3e-13 42.7 0.1 2 2 6.1e-14 6.1e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 72945 # 73649 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 234 Methyltransf_26 PF13659.1 117 6e-10 32.1 0.2 1 2 3.1e-07 3.1e-05 16.9 0.0 63 114 13 71 3 74 0.67 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_13 - 234 Methyltransf_26 PF13659.1 117 6e-10 32.1 0.2 2 2 5e-06 0.0005 13.0 0.1 4 44 174 213 171 227 0.80 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_68 - 1754 AAA_30 PF13604.1 196 1.6e-45 148.0 8.6 1 2 1.6e-06 0.00016 14.2 1.7 9 126 424 536 422 560 0.86 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_68 - 1754 AAA_30 PF13604.1 196 1.6e-45 148.0 8.6 2 2 5.8e-44 5.8e-42 136.4 0.7 2 186 971 1158 970 1162 0.94 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_7 - 209 F420_oxidored PF03807.12 96 0.00068 13.0 0.1 1 2 0.0093 0.94 2.9 0.0 48 68 88 107 19 112 0.78 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 209 F420_oxidored PF03807.12 96 0.00068 13.0 0.1 2 2 0.00026 0.027 7.9 0.0 14 43 121 150 119 203 0.78 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_89 - 235 HTH_Tnp_1 PF01527.15 76 0.00025 13.9 0.3 1 1 5.4e-06 0.00054 12.9 0.3 4 51 6 58 4 63 0.79 # 72945 # 73649 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_36 - 229 GerE PF00196.14 58 1.5e-06 20.4 0.0 1 1 3.8e-08 3.8e-06 19.1 0.0 3 56 148 201 146 203 0.95 # 25107 # 25793 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_67 - 767 TraG-D_C PF12696.2 128 9.4e-20 63.7 0.0 1 1 2.2e-21 2.2e-19 62.5 0.0 1 127 419 541 419 542 0.88 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_89 - 235 DDE_3 PF13358.1 146 0.00069 12.3 0.0 1 1 2.1e-05 0.0021 10.7 0.0 32 90 82 141 59 146 0.87 # 72945 # 73649 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_7 - 209 MipZ PF09140.6 261 1.2e-07 23.9 0.0 1 1 1.6e-09 1.6e-07 23.5 0.0 2 55 4 57 3 127 0.72 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_13 - 234 UPF0020 PF01170.13 180 0.00018 14.0 0.0 1 2 5.7e-05 0.0057 9.1 0.0 103 118 17 32 5 82 0.83 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_13 - 234 UPF0020 PF01170.13 180 0.00018 14.0 0.0 2 2 0.0045 0.46 2.9 0.0 28 44 170 186 165 226 0.79 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_1 - 212 Sigma70_r4 PF04545.11 50 1.1e-06 20.9 0.3 1 1 2.4e-08 2.4e-06 19.7 0.3 7 41 170 204 169 206 0.96 # 159 # 794 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.519 1_23 - 667 KorB PF08535.5 93 4.1e-05 16.6 0.3 1 2 4.5e-06 0.00046 13.3 0.0 1 45 152 195 152 214 0.85 # 14518 # 16518 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.617 1_23 - 667 KorB PF08535.5 93 4.1e-05 16.6 0.3 2 2 0.063 6.4 0.0 0.1 59 79 399 419 393 426 0.82 # 14518 # 16518 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.617 1_86 - 400 zf-C4_Topoisom PF01396.14 39 0.012 8.1 9.2 1 3 0.0002 0.02 7.4 0.3 22 36 53 66 43 69 0.86 # 70152 # 71351 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_86 - 400 zf-C4_Topoisom PF01396.14 39 0.012 8.1 9.2 2 3 0.0041 0.41 3.2 0.5 2 10 73 81 72 82 0.83 # 70152 # 71351 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_86 - 400 zf-C4_Topoisom PF01396.14 39 0.012 8.1 9.2 3 3 0.022 2.2 0.9 0.2 3 15 362 374 361 379 0.86 # 70152 # 71351 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_13 - 234 N6_N4_Mtase PF01555.13 231 1.5e-31 102.6 0.0 1 2 3.3e-14 3.4e-12 39.2 0.0 1 113 21 130 21 137 0.88 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_13 - 234 N6_N4_Mtase PF01555.13 231 1.5e-31 102.6 0.0 2 2 5.1e-21 5.1e-19 61.5 0.0 170 227 149 206 136 210 0.93 # 8684 # 9385 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 1_67 - 767 AAA_16 PF13191.1 185 4.7e-06 19.6 0.0 1 1 2.6e-07 2.6e-05 17.2 0.0 21 56 182 218 179 253 0.78 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_68 - 1754 AAA_22 PF13401.1 131 0.00049 13.2 0.1 1 2 0.0053 0.54 3.4 0.0 88 121 500 536 465 538 0.71 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_68 - 1754 AAA_22 PF13401.1 131 0.00049 13.2 0.1 2 2 0.0009 0.091 5.8 0.0 5 28 988 1011 984 1063 0.79 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_29 - 292 Methyltransf_27 PF13708.1 194 3.2e-63 205.7 0.0 1 1 3.9e-65 4e-63 205.4 0.0 5 194 95 287 91 287 0.94 # 19455 # 20330 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.587 1_91 - 186 HTH_Tnp_IS630 PF01710.11 120 9.5e-05 15.0 0.0 1 1 1.9e-06 0.0002 14.0 0.0 8 44 148 184 145 185 0.90 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_89 - 235 HTH_32 PF13565.1 77 1.3e-06 22.1 0.2 1 1 5.6e-08 5.7e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 72945 # 73649 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_1 - 212 HTH_23 PF13384.1 50 4.6e-07 22.3 0.1 1 1 5.2e-08 1e-06 21.2 0.1 4 42 168 208 165 211 0.85 # 159 # 794 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.519 1_89 - 235 HTH_23 PF13384.1 50 6.1e-06 18.8 0.7 1 2 0.079 1.6 1.6 0.0 7 27 11 35 7 36 0.69 # 72945 # 73649 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_89 - 235 HTH_23 PF13384.1 50 6.1e-06 18.8 0.7 2 2 9.3e-06 0.00019 14.0 0.1 28 42 41 55 40 62 0.87 # 72945 # 73649 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 207 HTH_23 PF13384.1 50 1.7e-05 17.4 0.2 1 1 2.4e-06 4.9e-05 15.9 0.2 10 37 171 200 163 204 0.77 # 3548 # 4168 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_23 - 667 HTH_23 PF13384.1 50 1.9e-05 17.2 0.1 1 1 7e-06 0.00014 14.4 0.0 14 40 151 177 147 183 0.88 # 14518 # 16518 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.617 1_91 - 186 HTH_23 PF13384.1 50 4.5e-05 16.0 0.3 1 1 2.2e-06 4.5e-05 16.0 0.3 5 39 146 180 142 184 0.87 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_67 - 767 zf-DHHC PF01529.15 174 0.0077 8.5 3.7 1 1 0.00016 0.016 7.5 3.7 90 158 27 130 25 147 0.76 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_91 - 186 HTH_7 PF02796.10 45 2.3e-13 42.7 1.1 1 1 5.1e-15 5.2e-13 41.6 0.1 1 44 141 181 141 182 0.97 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_91 - 186 HTH_29 PF13551.1 112 0.00011 15.3 0.6 1 2 0.025 2.5 1.3 0.2 24 46 114 136 88 153 0.67 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_91 - 186 HTH_29 PF13551.1 112 0.00011 15.3 0.6 2 2 1e-05 0.001 12.2 0.0 4 35 151 181 148 184 0.90 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_4 - 370 Met_10 PF02475.11 200 0.00068 12.2 0.0 1 1 1.2e-05 0.0012 11.4 0.0 98 143 183 229 178 278 0.85 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_89 - 235 DDE_Tnp_IS66 PF03050.9 271 2.3e-12 39.5 0.3 1 1 3e-14 3e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 72945 # 73649 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_67 - 767 TrwB_AAD_bind PF10412.4 386 4.5e-148 485.8 0.0 1 1 1.1e-149 5.8e-148 485.4 0.0 2 386 172 561 171 561 0.99 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_52 - 880 TrwB_AAD_bind PF10412.4 386 1.4e-05 16.7 0.1 1 1 7.5e-07 3.8e-05 15.3 0.0 16 94 482 556 474 569 0.72 # 33491 # 36130 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_7 - 209 TIGR01968 TIGR01968 261 0.00054 11.9 1.0 1 1 1.1e-05 0.0011 10.9 0.3 2 40 3 41 2 45 0.94 # 4766 # 5392 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_9 - 425 IMS_HHH PF11798.3 32 3.4e-08 26.2 0.1 1 1 8.5e-10 8.6e-08 24.9 0.1 5 32 174 201 170 201 0.90 # 5839 # 7113 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.574 1_6 - 207 HTH_Tnp_IS1 PF12759.2 46 0.00077 11.8 0.1 1 1 1.5e-05 0.0015 10.9 0.1 19 41 178 200 168 204 0.88 # 3548 # 4168 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_52 - 880 DUF87 PF01935.12 229 2.6e-06 20.3 0.0 1 1 1.3e-07 1.3e-05 18.0 0.0 26 223 484 675 479 681 0.77 # 33491 # 36130 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_89 - 235 HTH_28 PF13518.1 52 5.9e-05 16.0 1.2 1 1 5.1e-06 0.00026 14.0 1.2 22 36 40 54 13 55 0.76 # 72945 # 73649 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_91 - 186 HTH_28 PF13518.1 52 0.00014 14.8 0.0 1 1 8.5e-06 0.00043 13.2 0.0 8 33 154 179 148 184 0.82 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_77 - 85 Homez PF11569.3 57 0.00038 12.5 0.1 1 1 7e-06 0.0007 11.6 0.1 29 46 56 73 51 83 0.78 # 60743 # 60997 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_1 - 212 HTH_31 PF13560.1 64 0.0003 13.9 0.9 1 1 2e-05 0.00099 12.3 0.4 9 34 178 203 143 205 0.80 # 159 # 794 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.519 1_6 - 207 HTH_31 PF13560.1 64 0.00056 13.1 0.1 1 1 1.1e-05 0.00056 13.1 0.1 5 35 171 201 170 205 0.90 # 3548 # 4168 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_68 - 1754 UvrD_C_2 PF13538.1 104 9.2e-06 18.7 0.2 1 1 4.5e-07 4.5e-05 16.5 0.1 3 100 1340 1441 1338 1445 0.73 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_52 - 880 Pox_A32 PF04665.7 241 7.4e-05 15.0 0.0 1 1 1.5e-06 0.00015 14.0 0.0 6 40 474 508 470 523 0.82 # 33491 # 36130 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_1 - 174 Transposase_20 PF02371.11 87 7.6e-31 99.1 0.1 1 1 2.4e-32 1.2e-30 98.5 0.1 2 76 45 119 44 130 0.94 # 3 # 524 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.523 1_80 - 335 Transposase_20 PF02371.11 87 1.1e-24 79.3 0.2 1 1 4.6e-26 2.3e-24 78.3 0.2 2 78 210 286 209 296 0.94 # 64526 # 65530 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_67 - 767 T4SS-DNA_transf PF02534.9 469 1.3e-08 26.8 0.0 1 2 0.033 3.3 -1.0 0.0 127 199 259 330 249 358 0.73 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_67 - 767 T4SS-DNA_transf PF02534.9 469 1.3e-08 26.8 0.0 2 2 4.6e-10 4.7e-08 24.9 0.0 275 392 393 506 363 559 0.74 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 2_4 - 370 AlaDh_PNT_C PF01262.16 168 0.00049 12.6 0.6 1 1 2.1e-05 0.0021 10.5 0.1 15 69 181 237 171 249 0.84 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_89 - 235 DDE_Tnp_IS240 PF13610.1 140 7.7e-53 171.2 0.0 1 1 1.1e-54 1.1e-52 170.7 0.0 4 139 75 212 73 213 0.99 # 72945 # 73649 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_79 - 154 DUF2268 PF10026.4 195 5.6e-23 74.2 0.0 1 1 7.1e-25 7.1e-23 73.9 0.0 5 133 26 150 22 152 0.90 # 63522 # 63983 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.450 1_86 - 400 Zn_Tnp_IS1595 PF12760.2 46 0.0069 9.2 6.7 1 2 0.0026 0.26 4.1 1.2 19 32 73 85 57 97 0.74 # 70152 # 71351 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_86 - 400 Zn_Tnp_IS1595 PF12760.2 46 0.0069 9.2 6.7 2 2 0.0005 0.051 6.4 0.4 8 32 350 374 346 379 0.84 # 70152 # 71351 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_91 - 186 TrmB PF01978.14 68 5.6e-05 15.8 0.0 1 1 1.1e-06 0.00011 14.8 0.0 19 44 155 180 150 181 0.89 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_6 - 207 LacI PF00356.16 46 3.2e-06 19.7 0.2 1 1 9.9e-08 1e-05 18.1 0.2 2 20 183 201 182 206 0.86 # 3548 # 4168 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_52 - 880 AAA_10 PF12846.2 304 1.5e-46 152.1 0.0 1 1 4.6e-48 2.3e-46 151.4 0.0 1 294 481 773 481 779 0.87 # 33491 # 36130 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_67 - 767 AAA_10 PF12846.2 304 1.5e-09 30.5 0.0 1 1 9.1e-09 4.6e-07 22.4 0.0 3 296 187 494 186 499 0.65 # 48257 # 50557 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_91 - 186 HTH_20 PF12840.2 61 2e-06 20.5 0.2 1 2 0.0037 0.38 3.6 0.0 33 52 8 27 4 28 0.91 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_91 - 186 HTH_20 PF12840.2 61 2e-06 20.5 0.2 2 2 9.1e-06 0.00092 12.0 0.1 3 43 110 177 108 180 0.91 # 74345 # 74902 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_4 - 370 ADH_zinc_N PF00107.21 130 5.2e-23 74.0 0.1 1 1 8.3e-25 8.4e-23 73.3 0.1 1 128 197 330 197 332 0.86 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_9 - 425 DNA_pol_lambd_f PF10391.4 52 0.00036 13.0 0.0 1 1 9.5e-06 0.00096 11.7 0.0 5 30 183 209 179 220 0.85 # 5839 # 7113 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.574 1_68 - 1754 AAA_11 PF13086.1 236 2.2e-06 20.3 0.1 1 2 6.8e-06 0.00069 12.1 0.0 2 75 971 1041 970 1061 0.76 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_68 - 1754 AAA_11 PF13086.1 236 2.2e-06 20.3 0.1 2 2 0.00083 0.084 5.3 0.1 194 231 1067 1107 1043 1109 0.73 # 50557 # 55818 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_21 - 186 SSB PF00436.20 104 3.6e-41 132.2 0.2 1 1 4.4e-43 4.4e-41 131.9 0.2 1 99 6 105 6 113 0.95 # 13594 # 14151 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.624 2_4 - 370 ADH_zinc_N_2 PF13602.1 127 3.9e-06 20.7 0.0 1 1 9.8e-08 9.9e-06 19.4 0.0 2 121 231 362 230 363 0.62 # 2164 # 3273 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_4 - 318 Glyco_trans_4_3 PF12000.3 171 4.1e-06 19.4 0.0 1 2 0.00046 0.046 6.2 0.0 14 84 112 182 95 188 0.77 # 2188 # 3141 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_4 - 318 Glyco_trans_4_3 PF12000.3 171 4.1e-06 19.4 0.0 2 2 1.7e-05 0.0018 10.9 0.0 19 65 209 256 200 260 0.90 # 2188 # 3141 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/9f3cb999-be30-4a8c-83c7-cc06b4656f12 # Target file: checkm_output/bins/pm722/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm722/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9f3cb999-be30-4a8c-83c7-cc06b4656f12 checkm_output/bins/pm722/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:13:13 2017 # [ok]