# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 91 HTH_IclR PF09339.5 52 2.8e-06 19.8 0.0 1 1 1.6e-07 5.1e-06 18.9 0.0 4 43 9 47 8 49 0.92 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 7_2 - 66 HTH_IclR PF09339.5 52 5e-05 15.7 1.1 1 1 1.7e-06 5.6e-05 15.6 0.3 12 46 26 60 24 60 0.88 # 111 # 308 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_25 - 98 HTH_IclR PF09339.5 52 0.00081 11.9 0.0 1 1 6.2e-05 0.002 10.6 0.0 25 49 38 62 28 64 0.95 # 13999 # 14292 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 4_5 - 91 HTH_35 PF13693.1 78 1.4e-16 53.0 0.2 1 1 1.8e-18 1.7e-16 52.7 0.2 7 71 20 83 15 89 0.89 # 6989 # 7261 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_22 - 102 HTH_AsnC-type PF13404.1 42 1e-05 17.9 0.0 1 1 1.9e-07 1.8e-05 17.1 0.0 20 42 36 58 30 58 0.91 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 1_10 - 212 N6_Mtase PF02384.11 311 3.6e-07 22.3 0.0 1 1 5.9e-09 5.8e-07 21.7 0.0 3 97 71 166 69 201 0.72 # 5569 # 6204 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 8_1 - 208 rve_3 PF13683.1 67 1.7e-13 42.8 0.0 1 1 3e-15 2.9e-13 42.1 0.0 7 67 129 189 124 189 0.92 # 1 # 624 # 1 # ID=8_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 4_5 - 91 HTH_38 PF13936.1 44 5.4e-05 15.6 0.0 1 2 6.5e-05 0.0031 10.0 0.1 9 39 16 47 14 49 0.87 # 6989 # 7261 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 4_5 - 91 HTH_38 PF13936.1 44 5.4e-05 15.6 0.0 2 2 0.0062 0.3 3.6 0.0 25 35 59 69 53 72 0.92 # 6989 # 7261 # 1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.505 1_12 - 394 HTH_38 PF13936.1 44 0.00038 12.9 0.0 1 1 1.5e-05 0.00071 12.0 0.0 5 33 120 149 116 157 0.83 # 6578 # 7759 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 102 SpoIIID PF12116.3 82 0.0009 12.1 0.3 1 1 3.4e-05 0.0033 10.3 0.3 10 38 23 52 18 83 0.81 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 3_12 - 504 UvrD-helicase PF00580.16 315 5.3e-17 54.9 3.9 1 2 2.9e-06 0.00028 13.1 0.1 2 38 8 44 7 64 0.81 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 UvrD-helicase PF00580.16 315 5.3e-17 54.9 3.9 2 2 3.4e-15 3.3e-13 42.4 0.3 236 305 161 239 46 246 0.72 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_22 - 102 HTH_34 PF13601.1 80 0.00012 15.0 0.1 1 1 9.8e-06 0.00047 13.1 0.1 6 78 25 92 21 93 0.80 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 7_2 - 66 HTH_34 PF13601.1 80 0.00036 13.5 0.0 1 1 8.4e-06 0.00041 13.3 0.0 2 42 18 60 17 65 0.87 # 111 # 308 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_26 - 101 MarR PF01047.17 59 4.9e-05 15.9 0.0 1 1 1.9e-06 9.2e-05 15.0 0.0 9 37 33 61 32 63 0.93 # 14319 # 14621 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_22 - 102 MarR PF01047.17 59 0.00026 13.6 0.0 1 1 8.2e-06 0.0004 13.0 0.0 15 44 31 60 19 60 0.79 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 5_8 - 130 Sigma54_DBD PF04552.8 160 0.00014 14.2 0.1 1 1 4.1e-06 0.0002 13.8 0.1 99 154 44 97 27 103 0.77 # 3532 # 3921 # 1 # ID=5_8;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_15 - 130 Sigma54_DBD PF04552.8 160 0.00032 13.1 0.1 1 1 9.3e-06 0.00045 12.6 0.1 100 154 45 97 27 103 0.76 # 9110 # 9499 # 1 # ID=3_15;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_22 - 102 HTH_Tnp_4 PF13613.1 53 8.1e-05 15.0 0.0 1 1 1.3e-06 0.00012 14.4 0.0 18 47 32 61 31 67 0.89 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 3_10 - 347 DUF3584 PF12128.3 1201 0.016 5.3 51.1 1 2 0.0051 0.49 0.4 32.3 377 534 86 242 42 246 0.65 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 DUF3584 PF12128.3 1201 0.016 5.3 51.1 2 2 2e-05 0.0019 8.3 20.6 613 709 225 327 220 345 0.80 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 226 TetR_N PF00440.18 47 3.4e-20 64.4 0.1 1 2 6.9e-21 6.7e-19 60.2 0.0 2 47 19 64 18 64 0.97 # 12435 # 13112 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_19 - 226 TetR_N PF00440.18 47 3.4e-20 64.4 0.1 2 2 0.013 1.2 1.8 0.1 1 16 179 194 179 196 0.91 # 12435 # 13112 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 3_12 - 504 AAA_19 PF13245.1 76 1.5e-09 30.4 0.0 1 1 4.2e-11 4.1e-09 29.0 0.0 8 75 18 77 12 78 0.88 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 262 CbiA PF01656.18 195 1.1e-30 99.3 0.0 1 1 1.5e-32 1.5e-30 98.9 0.0 1 170 5 205 5 229 0.77 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_7 - 372 tRNA_Me_trans PF03054.11 356 3.7e-05 15.2 0.0 1 2 1.1e-06 0.00011 13.6 0.0 2 71 52 122 51 144 0.74 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_7 - 372 tRNA_Me_trans PF03054.11 356 3.7e-05 15.2 0.0 2 2 0.042 4 -1.4 0.0 193 224 274 305 236 311 0.83 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_12 - 394 Sigma70_r4_2 PF08281.7 54 6.1e-05 15.4 0.0 1 2 0.027 2.7 0.5 0.0 22 38 115 131 103 131 0.76 # 6578 # 7759 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.501 1_12 - 394 Sigma70_r4_2 PF08281.7 54 6.1e-05 15.4 0.0 2 2 1.8e-06 0.00017 13.9 0.0 17 48 127 158 122 161 0.91 # 6578 # 7759 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.501 2_3 - 355 Rep_3 PF01051.16 222 1.1e-07 24.5 0.0 1 1 2.8e-09 2.7e-07 23.2 0.0 43 221 127 310 101 311 0.83 # 747 # 1811 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 8_1 - 208 rve PF00665.21 120 1.2e-27 89.3 0.0 1 1 3.7e-29 1.8e-27 88.7 0.0 2 119 37 151 36 152 0.97 # 1 # 624 # 1 # ID=8_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 6_1 - 235 rve PF00665.21 120 3.2e-13 42.7 0.1 1 2 0.03 1.4 1.9 0.0 78 102 27 49 6 54 0.84 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_1 - 235 rve PF00665.21 120 3.2e-13 42.7 0.1 2 2 1.2e-13 5.9e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_26 - 101 Fe_dep_repress PF01325.14 60 0.00013 14.8 0.1 1 1 3e-06 0.00029 13.7 0.1 23 42 42 61 23 63 0.84 # 14319 # 14621 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 3_7 - 204 TIGR00573 TIGR00573 217 1.8e-16 52.8 0.0 1 1 2.7e-18 2.6e-16 52.3 0.0 10 181 21 190 15 202 0.76 # 3054 # 3665 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 3_12 - 504 AAA_30 PF13604.1 196 4.7e-08 25.7 0.1 1 2 9.2e-07 8.9e-05 15.0 0.0 19 80 20 81 11 109 0.77 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 AAA_30 PF13604.1 196 4.7e-08 25.7 0.1 2 2 0.00017 0.017 7.5 0.0 115 133 211 229 174 278 0.75 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 5_7 - 114 HTH_Tnp_1 PF01527.15 76 6.5e-14 44.6 1.2 1 1 8e-15 2.6e-13 42.7 1.2 1 74 1 87 1 88 0.86 # 3207 # 3548 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 3_14 - 109 HTH_Tnp_1 PF01527.15 76 1.2e-13 43.7 1.5 1 1 1.5e-14 4.8e-13 41.8 1.5 1 74 1 87 1 88 0.83 # 8784 # 9110 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 6_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00024 13.9 0.3 1 1 1.6e-05 0.00052 12.9 0.3 4 51 6 58 4 63 0.79 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_7 - 372 TIGR02432 TIGR02432 189 3.9e-05 16.2 0.1 1 2 1.1e-05 0.001 11.5 0.0 1 58 52 109 52 119 0.85 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_7 - 372 TIGR02432 TIGR02432 189 3.9e-05 16.2 0.1 2 2 0.0084 0.82 2.1 0.0 140 165 235 260 207 262 0.76 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 6_1 - 235 DDE_3 PF13358.1 146 0.00066 12.3 0.0 1 1 2.1e-05 0.002 10.7 0.0 32 90 82 141 59 146 0.87 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 262 MipZ PF09140.6 261 1.7e-10 33.2 0.0 1 2 6.6e-10 6.4e-08 24.8 0.0 2 52 4 55 3 81 0.83 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 262 MipZ PF09140.6 261 1.7e-10 33.2 0.0 2 2 0.00031 0.03 6.2 0.0 89 122 117 150 89 166 0.74 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_26 - 101 Sigma70_r4 PF04545.11 50 0.00012 14.2 0.0 1 1 2.2e-06 0.00021 13.5 0.0 15 42 36 63 35 67 0.88 # 14319 # 14621 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_12 - 394 KorB PF08535.5 93 8.3e-32 102.2 0.2 1 1 3e-33 2.9e-31 100.4 0.0 1 92 134 222 134 223 0.97 # 6578 # 7759 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.501 2_26 - 101 HTH_37 PF13744.1 80 9.9e-12 37.4 0.3 1 1 2.4e-13 1.1e-11 37.3 0.3 8 79 11 88 4 89 0.88 # 14319 # 14621 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_22 - 102 HTH_37 PF13744.1 80 0.00033 13.4 0.0 1 1 1e-05 0.00049 12.8 0.0 20 50 22 52 13 60 0.85 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 1_11 - 91 Rrf2 PF02082.15 83 0.00053 13.0 0.4 1 1 1.1e-05 0.0011 12.0 0.4 1 52 1 49 1 74 0.86 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_11 - 91 HTH_43 PF09904.4 90 4e-12 38.7 0.0 1 1 4.7e-14 4.5e-12 38.6 0.0 2 77 2 81 1 89 0.87 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_11 - 91 HTH_27 PF13463.1 68 0.00049 13.3 0.0 1 1 6.4e-06 0.00062 13.0 0.0 8 44 13 48 9 76 0.78 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_20 - 425 TIGR01394 TIGR01394 594 0.0016 9.2 0.0 1 1 2.4e-05 0.0023 8.6 0.0 408 486 292 368 286 379 0.84 # 13116 # 14390 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.624 8_1 - 208 rve_2 PF13333.1 52 2.3e-08 26.9 0.0 1 1 4.3e-10 4.2e-08 26.1 0.0 1 46 142 191 142 196 0.84 # 1 # 624 # 1 # ID=8_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_22 - 102 P22_Cro PF14549.1 60 0.00061 12.4 0.1 1 1 1.2e-05 0.0012 11.5 0.1 12 28 36 52 29 57 0.86 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 3_12 - 504 AAA_22 PF13401.1 131 3.2e-05 17.0 0.0 1 2 2.7e-05 0.0026 10.8 0.0 8 68 23 92 17 122 0.63 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 AAA_22 PF13401.1 131 3.2e-05 17.0 0.0 2 2 0.005 0.48 3.4 0.0 82 124 189 225 164 229 0.77 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 TIGR01074 TIGR01074 668 1.2e-10 32.7 0.8 1 3 0.0039 0.37 1.4 0.0 8 33 12 38 7 57 0.74 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 TIGR01074 TIGR01074 668 1.2e-10 32.7 0.8 2 3 4.1e-07 4e-05 14.5 0.0 205 254 192 238 179 271 0.87 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 TIGR01074 TIGR01074 668 1.2e-10 32.7 0.8 3 3 7.5e-07 7.3e-05 13.6 0.1 534 614 396 472 347 493 0.80 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_22 - 102 NUMOD1 PF07453.8 37 0.00023 13.9 0.0 1 1 4.8e-06 0.00047 12.9 0.0 20 35 37 52 30 54 0.91 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 1_11 - 91 HTH_9 PF08221.6 62 0.00027 13.7 0.0 1 1 4.4e-06 0.00043 13.0 0.0 19 51 14 46 11 47 0.90 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_22 - 102 HTH_1 PF00126.22 60 1.3e-24 78.6 0.7 1 1 3.8e-26 1.8e-24 78.2 0.7 4 60 24 80 21 80 0.96 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 1_11 - 91 HTH_1 PF00126.22 60 3.5e-05 16.4 0.0 1 1 1.1e-06 5.3e-05 15.8 0.0 22 51 31 61 30 76 0.79 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 6_1 - 235 HTH_32 PF13565.1 77 1.3e-06 22.1 0.2 1 1 5.6e-08 5.5e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_12 - 504 TIGR00609 TIGR00609 1175 4.1e-12 37.5 1.1 1 4 0.0098 0.95 -0.2 0.0 13 27 23 37 13 47 0.82 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 TIGR00609 TIGR00609 1175 4.1e-12 37.5 1.1 2 4 1.4e-10 1.4e-08 25.8 0.0 368 454 190 270 179 282 0.80 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 TIGR00609 TIGR00609 1175 4.1e-12 37.5 1.1 3 4 0.011 1 -0.3 0.0 728 746 412 430 401 437 0.88 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 TIGR00609 TIGR00609 1175 4.1e-12 37.5 1.1 4 4 7.4e-05 0.0072 6.8 0.1 789 818 446 475 417 502 0.70 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_25 - 498 A2L_zn_ribbon PF08792.5 33 0.008 8.6 3.6 1 2 0.004 0.39 3.2 0.5 5 29 75 100 73 101 0.85 # 17336 # 18829 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_25 - 498 A2L_zn_ribbon PF08792.5 33 0.008 8.6 3.6 2 2 0.00068 0.066 5.7 0.1 2 13 439 450 439 453 0.85 # 17336 # 18829 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_26 - 101 HTH_3 PF01381.17 55 4.4e-08 25.8 0.1 1 1 6.6e-10 6.4e-08 25.3 0.1 1 44 33 76 33 84 0.86 # 14319 # 14621 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 6_1 - 235 HTH_23 PF13384.1 50 5.9e-06 18.8 0.7 1 1 1.3e-05 0.00018 14.0 0.1 28 42 41 55 40 62 0.87 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_7 - 114 HTH_23 PF13384.1 50 8.8e-06 18.2 0.3 1 1 1.6e-06 2.2e-05 17.0 0.1 5 42 10 55 8 66 0.86 # 3207 # 3548 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_27 - 246 HTH_23 PF13384.1 50 1.2e-05 17.8 0.4 1 1 8.5e-07 1.2e-05 17.8 0.4 2 37 171 206 170 216 0.90 # 19261 # 19998 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.675 3_14 - 109 HTH_23 PF13384.1 50 8.4e-05 15.1 1.1 1 1 3.3e-05 0.00046 12.7 0.2 5 43 10 56 8 66 0.83 # 8784 # 9110 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_12 - 394 HTH_23 PF13384.1 50 0.00012 14.6 0.2 1 1 6.1e-05 0.00084 11.9 0.0 4 35 122 154 119 161 0.81 # 6578 # 7759 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 102 HTH_23 PF13384.1 50 0.00036 13.1 0.0 1 1 5.3e-05 0.00073 12.1 0.0 15 40 31 56 25 65 0.79 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 1_19 - 226 HTH_23 PF13384.1 50 0.00087 11.9 0.2 1 1 0.00034 0.0047 9.5 0.0 10 35 22 51 14 64 0.75 # 12435 # 13112 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_27 - 246 HTH_7 PF02796.10 45 7.9e-08 25.0 0.1 1 1 1.9e-09 1.8e-07 23.8 0.1 8 44 173 209 168 210 0.87 # 19261 # 19998 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.675 1_25 - 498 Ribosomal_S27e PF01667.12 55 0.00051 12.5 1.1 1 1 1.4e-05 0.0014 11.1 1.1 5 33 71 99 68 104 0.90 # 17336 # 18829 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_26 - 101 HTH_19 PF12844.2 64 3.5e-08 26.3 0.0 1 1 5.2e-10 5.1e-08 25.8 0.0 4 52 33 81 31 86 0.95 # 14319 # 14621 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_25 - 498 zinc_ribbon_4 PF13717.1 36 0.022 7.4 5.2 1 2 0.00049 0.048 6.3 0.1 2 14 73 85 73 87 0.84 # 17336 # 18829 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_25 - 498 zinc_ribbon_4 PF13717.1 36 0.022 7.4 5.2 2 2 0.0064 0.62 2.8 0.0 5 14 95 104 94 111 0.81 # 17336 # 18829 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 3_7 - 204 DNA_pol_A_exo1 PF01612.15 176 5.4e-05 15.6 0.2 1 2 6.3e-06 0.00061 12.1 0.0 13 96 11 116 2 162 0.74 # 3054 # 3665 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 3_7 - 204 DNA_pol_A_exo1 PF01612.15 176 5.4e-05 15.6 0.2 2 2 0.022 2.1 0.6 0.2 157 173 168 184 153 186 0.91 # 3054 # 3665 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 6_1 - 235 DDE_Tnp_IS66 PF03050.9 271 2.3e-12 39.5 0.3 1 1 3e-14 2.9e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_12 - 504 PhoH PF02562.11 205 2.5e-06 19.7 0.2 1 2 0.0013 0.13 4.3 0.0 22 45 22 45 4 61 0.78 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 PhoH PF02562.11 205 2.5e-06 19.7 0.2 2 2 7.5e-06 0.00072 11.7 0.0 122 168 196 240 193 255 0.83 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 ResIII PF04851.10 184 1e-06 21.5 0.0 1 1 2.8e-08 2.7e-06 20.2 0.0 23 75 17 69 7 107 0.78 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 2_7 - 372 PAPS_reduct PF01507.14 174 3.4e-12 39.4 0.4 1 2 0.014 1.4 1.6 0.0 2 17 53 68 52 91 0.76 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_7 - 372 PAPS_reduct PF01507.14 174 3.4e-12 39.4 0.4 2 2 4.4e-13 4.3e-11 35.8 0.1 58 172 154 279 145 281 0.85 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_13 - 262 TIGR01968 TIGR01968 261 5e-09 28.4 0.1 1 2 5e-07 4.9e-05 15.3 0.1 2 39 3 41 2 45 0.84 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 262 TIGR01968 TIGR01968 261 5e-09 28.4 0.1 2 2 9e-06 0.00087 11.2 0.0 105 135 120 150 111 218 0.80 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 3_7 - 204 TIGR01406 TIGR01406 231 9.1e-19 60.5 0.0 1 1 1.2e-20 1.2e-18 60.1 0.0 3 180 21 194 19 202 0.85 # 3054 # 3665 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 6_1 - 235 HTH_28 PF13518.1 52 5.6e-05 16.0 1.2 1 1 5.1e-06 0.00025 14.0 1.2 22 36 40 54 13 55 0.76 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_27 - 246 HTH_28 PF13518.1 52 0.0003 13.7 0.7 1 1 6.3e-06 0.0003 13.7 0.7 1 33 175 207 175 209 0.95 # 19261 # 19998 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.675 1_19 - 226 HTH_Tnp_1_2 PF13022.1 142 0.00077 12.1 0.0 1 1 1.2e-05 0.0011 11.6 0.0 22 77 24 73 5 79 0.76 # 12435 # 13112 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_22 - 102 HTH_24 PF13412.1 48 8.3e-07 21.3 0.0 1 1 5e-08 1.2e-06 20.7 0.0 16 44 32 60 22 60 0.86 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 7_2 - 66 HTH_24 PF13412.1 48 1.5e-05 17.3 0.0 1 1 9.3e-07 2.2e-05 16.7 0.0 4 45 17 60 15 61 0.93 # 111 # 308 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_11 - 91 HTH_24 PF13412.1 48 1.7e-05 17.0 0.1 1 1 1.1e-06 2.7e-05 16.4 0.1 5 44 10 49 7 49 0.93 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 1_12 - 394 HTH_24 PF13412.1 48 1.8e-05 16.9 0.3 1 2 0.00064 0.016 7.6 0.2 1 29 104 131 104 131 0.90 # 6578 # 7759 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.501 1_12 - 394 HTH_24 PF13412.1 48 1.8e-05 16.9 0.3 2 2 0.00094 0.023 7.0 0.0 20 41 139 160 138 161 0.90 # 6578 # 7759 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 102 HTH_30 PF13556.1 59 6.6e-06 18.6 0.1 1 1 1e-07 9.8e-06 18.0 0.1 10 44 31 65 24 75 0.88 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 3_7 - 204 TIGR01298 TIGR01298 200 1.2e-07 24.2 1.0 1 1 7e-08 6.8e-06 18.5 1.0 1 196 11 190 11 194 0.82 # 3054 # 3665 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 2_26 - 101 HTH_31 PF13560.1 64 9.1e-08 25.1 0.0 1 1 1.4e-09 1.3e-07 24.6 0.0 5 55 32 81 29 90 0.90 # 14319 # 14621 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 3_12 - 504 UvrD_C_2 PF13538.1 104 7.4e-11 35.0 0.0 1 1 3.5e-12 3.4e-10 32.9 0.0 46 99 393 463 352 467 0.67 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_13 - 262 AAA_25 PF13481.1 194 0.00038 12.7 0.0 1 1 6e-06 0.00059 12.1 0.0 42 91 12 51 11 134 0.78 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 3_12 - 504 Viral_helicase1 PF01443.13 234 8.8e-11 34.6 0.0 1 3 1.4e-05 0.0014 11.0 0.0 2 49 23 73 22 87 0.67 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 Viral_helicase1 PF01443.13 234 8.8e-11 34.6 0.0 2 3 1.8e-05 0.0018 10.7 0.0 56 105 188 234 146 256 0.78 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 Viral_helicase1 PF01443.13 234 8.8e-11 34.6 0.0 3 3 5.2e-05 0.005 9.2 0.0 176 227 404 462 344 467 0.75 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 AAA_14 PF13173.1 128 1.6e-05 17.7 1.3 1 2 2.5e-05 0.0025 10.6 0.1 11 46 28 62 18 156 0.76 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_12 - 504 AAA_14 PF13173.1 128 1.6e-05 17.7 1.3 2 2 0.0011 0.11 5.3 0.0 51 99 176 227 127 241 0.73 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 1_11 - 91 Mga PF05043.8 87 0.00025 14.2 0.1 1 1 3.1e-06 0.00031 13.9 0.1 17 55 9 47 2 62 0.89 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_25 - 98 PaaX PF07848.7 70 9.9e-05 15.2 0.0 1 1 1.4e-06 0.00014 14.8 0.0 19 70 28 79 10 79 0.88 # 13999 # 14292 # 1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_2 - 476 DNA_methylase PF00145.12 335 5.8e-11 34.9 0.0 1 2 2.1e-11 2e-09 29.8 0.0 71 160 228 320 199 324 0.83 # 951 # 2378 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 476 DNA_methylase PF00145.12 335 5.8e-11 34.9 0.0 2 2 0.0031 0.3 2.9 0.0 290 330 407 448 341 452 0.73 # 951 # 2378 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_7 - 372 ATP_bind_3 PF01171.15 182 0.00014 14.2 0.0 1 2 5.2e-05 0.0051 9.2 0.0 1 59 52 110 52 129 0.78 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_7 - 372 ATP_bind_3 PF01171.15 182 0.00014 14.2 0.0 2 2 0.005 0.49 2.7 0.0 134 161 232 260 207 262 0.72 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_25 - 498 zinc_ribbon_5 PF13719.1 37 0.0021 10.6 2.7 1 2 0.00031 0.03 6.8 0.0 2 14 73 85 72 87 0.83 # 17336 # 18829 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_25 - 498 zinc_ribbon_5 PF13719.1 37 0.0021 10.6 2.7 2 2 0.0048 0.47 3.0 0.0 5 14 95 104 94 113 0.81 # 17336 # 18829 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_7 - 372 TIGR00420 TIGR00420 351 0.00098 10.5 0.0 1 2 0.00011 0.01 7.2 0.0 2 64 52 110 51 128 0.77 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_7 - 372 TIGR00420 TIGR00420 351 0.00098 10.5 0.0 2 2 0.0073 0.71 1.1 0.0 192 223 274 305 245 313 0.89 # 3300 # 4415 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 6_1 - 235 DDE_Tnp_IS240 PF13610.1 140 7.4e-53 171.2 0.0 1 1 2.1e-54 1e-52 170.7 0.0 4 139 75 212 73 213 0.99 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 8_1 - 208 DDE_Tnp_IS240 PF13610.1 140 5.1e-09 29.1 0.1 1 1 1.4e-10 6.6e-09 28.7 0.1 2 137 42 179 41 181 0.93 # 1 # 624 # 1 # ID=8_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 2_28 - 183 HTH_26 PF13443.1 63 8.7e-05 15.6 0.1 1 2 0.0022 0.22 4.7 0.0 9 48 53 91 45 92 0.86 # 15139 # 15687 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 2_28 - 183 HTH_26 PF13443.1 63 8.7e-05 15.6 0.1 2 2 0.00018 0.017 8.2 0.0 39 56 163 180 155 182 0.92 # 15139 # 15687 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 498 Zn-ribbon_8 PF09723.5 42 0.036 7.0 9.5 1 2 0.00051 0.05 6.5 5.2 7 35 75 101 75 105 0.89 # 17336 # 18829 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_25 - 498 Zn-ribbon_8 PF09723.5 42 0.036 7.0 9.5 2 2 0.016 1.6 1.7 0.1 25 37 439 450 430 459 0.71 # 17336 # 18829 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_11 - 91 HTH_11 PF08279.7 55 0.00034 13.1 0.0 1 1 4.7e-06 0.00046 12.7 0.0 1 46 9 54 9 70 0.77 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 7_2 - 66 MarR_2 PF12802.2 62 6e-06 18.8 0.1 1 1 3e-07 9.8e-06 18.1 0.1 12 49 23 60 4 60 0.84 # 111 # 308 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_26 - 101 MarR_2 PF12802.2 62 6.7e-06 18.6 0.0 1 1 4.3e-07 1.4e-05 17.6 0.0 11 40 33 60 28 61 0.93 # 14319 # 14621 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_22 - 102 MarR_2 PF12802.2 62 7.6e-05 15.2 0.1 1 1 3.3e-06 0.00011 14.8 0.1 22 47 34 59 22 80 0.86 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 7_2 - 66 HTH_5 PF01022.15 47 2.4e-10 32.8 0.2 1 1 7.5e-12 2.4e-10 32.8 0.2 1 43 15 60 15 60 0.93 # 111 # 308 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_11 - 91 HTH_5 PF01022.15 47 2.7e-06 19.9 0.0 1 1 1.2e-07 3.9e-06 19.4 0.0 6 41 12 48 8 49 0.91 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_26 - 101 HTH_5 PF01022.15 47 0.00043 12.9 0.0 1 1 2.9e-05 0.00095 11.7 0.0 15 34 41 60 33 60 0.84 # 14319 # 14621 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 7_2 - 66 TrmB PF01978.14 68 7.8e-05 15.3 0.0 1 1 2.2e-06 0.00011 14.8 0.0 12 50 20 60 17 61 0.92 # 111 # 308 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_11 - 91 TrmB PF01978.14 68 0.00089 11.9 0.0 1 1 2.8e-05 0.0013 11.3 0.0 19 48 19 48 11 52 0.85 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 2_26 - 101 HTH_Crp_2 PF13545.1 76 1.2e-05 17.9 0.0 1 1 2.1e-07 2e-05 17.2 0.0 24 48 37 61 23 63 0.81 # 14319 # 14621 # -1 # ID=2_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_11 - 91 HTH_Mga PF08280.6 59 8.6e-07 21.6 0.0 1 1 1e-08 1e-06 21.4 0.0 2 54 5 57 4 62 0.93 # 6257 # 6529 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.465 3_14 - 109 Phage_terminase PF10668.4 60 0.00045 12.9 0.0 1 1 1.7e-05 0.00084 12.0 0.0 9 45 12 53 5 69 0.79 # 8784 # 9110 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 5_7 - 114 Phage_terminase PF10668.4 60 0.00054 12.6 0.0 1 1 2e-05 0.00097 11.8 0.0 9 45 12 53 5 68 0.80 # 3207 # 3548 # 1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 3_10 - 347 Seryl_tRNA_N PF02403.17 108 0.025 7.5 46.3 1 5 0.019 1.8 1.5 8.8 39 98 89 152 77 158 0.72 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 Seryl_tRNA_N PF02403.17 108 0.025 7.5 46.3 2 5 0.00084 0.082 5.9 3.1 50 100 146 196 143 199 0.89 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 Seryl_tRNA_N PF02403.17 108 0.025 7.5 46.3 3 5 2.6e-06 0.00025 13.9 12.2 19 100 216 294 201 297 0.85 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 Seryl_tRNA_N PF02403.17 108 0.025 7.5 46.3 4 5 0.00031 0.03 7.3 2.1 62 105 284 327 282 330 0.90 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 Seryl_tRNA_N PF02403.17 108 0.025 7.5 46.3 5 5 0.0059 0.57 3.1 1.6 82 105 304 327 296 345 0.51 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_7 - 204 RNase_T PF00929.19 164 2.4e-23 76.1 0.0 1 1 3e-25 2.9e-23 75.8 0.0 1 163 21 178 21 179 0.94 # 3054 # 3665 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 7_2 - 66 HTH_20 PF12840.2 61 1.8e-15 49.4 0.5 1 1 7e-17 2.3e-15 49.1 0.5 3 52 9 60 5 60 0.94 # 111 # 308 # -1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_22 - 102 HTH_20 PF12840.2 61 1.2e-06 21.1 0.1 1 1 7e-08 2.3e-06 20.3 0.1 16 59 25 69 21 71 0.87 # 14657 # 14962 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.585 1_19 - 226 HTH_20 PF12840.2 61 0.00023 13.8 0.1 1 1 5.4e-05 0.0017 11.0 0.0 21 46 30 55 18 63 0.85 # 12435 # 13112 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_5 - 169 DnaJ_CXXCXGXG PF00684.14 66 1.7e-05 17.7 0.3 1 1 3.3e-07 3.2e-05 16.8 0.3 1 32 6 38 3 49 0.70 # 3208 # 3714 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_12 - 504 UvrD_C PF13361.1 351 8.8e-11 34.6 0.0 1 1 1.7e-12 1.7e-10 33.7 0.0 238 347 359 468 334 472 0.76 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 3_10 - 347 AAA_13 PF13166.1 712 0.0065 7.7 36.6 1 2 0.0019 0.18 2.9 28.3 283 457 85 259 71 272 0.58 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 3_10 - 347 AAA_13 PF13166.1 712 0.0065 7.7 36.6 2 2 2.3e-05 0.0023 9.2 23.2 287 474 160 339 154 345 0.78 # 5547 # 6587 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_13 - 262 ArsA_ATPase PF02374.10 305 5.6e-06 18.4 0.0 1 2 3e-07 2.9e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 262 ArsA_ATPase PF02374.10 305 5.6e-06 18.4 0.0 2 2 0.029 2.8 -0.3 0.0 124 136 124 136 106 143 0.79 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 262 AAA_31 PF13614.1 157 1.3e-10 34.3 0.0 1 1 2.6e-12 2.6e-10 33.3 0.0 1 149 3 157 3 165 0.79 # 7763 # 8548 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_15 - 272 Pterin_bind PF00809.17 210 2.7e-60 196.1 0.0 1 1 3.4e-62 3.3e-60 195.9 0.0 1 209 10 216 10 217 0.98 # 9340 # 10155 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.608 3_12 - 504 AAA_11 PF13086.1 236 2.8e-07 23.2 0.1 1 1 1.9e-08 1.8e-06 20.5 0.1 23 228 25 228 8 229 0.66 # 6874 # 8385 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.509 5_8 - 130 HTH_21 PF13276.1 60 1.4e-19 62.8 3.5 1 1 6.2e-21 3e-19 61.7 3.5 2 60 46 103 44 103 0.94 # 3532 # 3921 # 1 # ID=5_8;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_15 - 130 HTH_21 PF13276.1 60 5.6e-19 60.9 4.6 1 1 2.7e-20 1.3e-18 59.7 4.6 2 60 46 103 43 103 0.92 # 9110 # 9499 # 1 # ID=3_15;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/c46fc774-b252-481a-9005-98d7e5aad926 # Target file: checkm_output/bins/pm717/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm717/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c46fc774-b252-481a-9005-98d7e5aad926 checkm_output/bins/pm717/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:13:01 2017 # [ok]