# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_17 - 522 KaiC PF06745.8 227 2.5e-05 13.9 0.0 1 1 3e-06 5e-05 12.8 0.0 18 53 256 291 252 294 0.93 # 12262 # 13827 # 1 # ID=1_17;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_10 - 186 HTH_IclR PF09339.5 52 2.1e-06 17.7 0.2 1 1 4.6e-07 7.8e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 186 HTH_22 PF13309.1 64 4e-05 13.8 1.2 1 1 1.2e-05 0.0002 11.6 0.1 35 63 156 179 143 180 0.76 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_17 - 522 FtsK_SpoIIIE PF01580.13 205 0.00014 11.8 0.0 1 1 1.8e-05 0.0003 10.7 0.0 14 59 231 279 220 282 0.78 # 12262 # 13827 # 1 # ID=1_17;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_10 - 186 HTH_40 PF14493.1 91 0.00011 12.9 0.6 1 1 2.1e-05 0.00036 11.2 0.1 7 32 152 177 147 183 0.89 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 186 HTH_38 PF13936.1 44 1e-06 18.7 0.0 1 1 5.9e-08 1e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 244 MarR PF01047.17 59 2.5e-05 14.4 0.0 1 1 2.9e-06 4.9e-05 13.5 0.0 36 59 53 76 25 76 0.94 # 385 # 1116 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_14 - 274 DUF3584 PF12128.3 1201 0.0031 5.2 22.4 1 2 2.8e-05 0.00047 7.9 3.3 598 657 32 91 25 98 0.90 # 9459 # 10280 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_14 - 274 DUF3584 PF12128.3 1201 0.0031 5.2 22.4 2 2 0.0008 0.014 3.0 11.3 608 674 111 177 105 184 0.83 # 9459 # 10280 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_17 - 522 AAA_19 PF13245.1 76 0.00015 12.0 0.0 1 1 2.7e-05 0.00047 10.4 0.0 15 53 262 297 255 303 0.80 # 12262 # 13827 # 1 # ID=1_17;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_2 - 244 PadR PF03551.9 75 3.8e-05 13.9 0.0 1 1 7.1e-06 0.00012 12.3 0.0 34 69 51 85 41 89 0.93 # 385 # 1116 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_13 - 235 rve PF00665.21 120 5.6e-14 42.7 0.1 1 2 0.015 0.25 1.9 0.0 78 102 27 49 6 54 0.84 # 8414 # 9118 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 235 rve PF00665.21 120 5.6e-14 42.7 0.1 2 2 6.1e-14 1e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 8414 # 9118 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 235 HTH_Tnp_1 PF01527.15 76 4.2e-05 13.9 0.3 1 1 5.4e-06 9.1e-05 12.9 0.3 4 51 6 58 4 63 0.79 # 8414 # 9118 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 235 DDE_3 PF13358.1 146 0.00012 12.3 0.0 1 1 2.1e-05 0.00035 10.7 0.0 32 90 82 141 59 146 0.87 # 8414 # 9118 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 244 Replic_Relax PF13814.1 191 6.9e-10 29.5 0.0 1 1 1.1e-10 1.8e-09 28.1 0.0 1 174 25 179 25 186 0.81 # 385 # 1116 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_2 - 244 HTH_27 PF13463.1 68 8.2e-07 19.8 0.0 1 2 7.8e-06 0.00013 12.7 0.0 35 60 50 76 24 85 0.78 # 385 # 1116 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_2 - 244 HTH_27 PF13463.1 68 8.2e-07 19.8 0.0 2 2 0.0025 0.043 4.7 0.0 6 28 133 157 129 161 0.88 # 385 # 1116 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_10 - 186 HTH_Tnp_IS630 PF01710.11 120 1.6e-05 15.0 0.0 1 1 1.9e-06 3.3e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 235 HTH_32 PF13565.1 77 2.2e-07 22.1 0.2 1 1 5.6e-08 9.6e-07 20.0 0.0 26 76 5 50 2 51 0.83 # 8414 # 9118 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 235 HTH_23 PF13384.1 50 1e-06 18.8 0.7 1 2 0.032 0.27 1.6 0.0 7 27 11 35 7 36 0.69 # 8414 # 9118 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 235 HTH_23 PF13384.1 50 1e-06 18.8 0.7 2 2 3.7e-06 3.2e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 8414 # 9118 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 186 HTH_23 PF13384.1 50 7.5e-06 16.0 0.3 1 1 8.8e-07 7.5e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 186 HTH_7 PF02796.10 45 3.1e-14 43.1 0.5 1 1 5.1e-15 8.7e-14 41.6 0.1 1 44 141 181 141 182 0.97 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 186 HTH_29 PF13551.1 112 1.8e-05 15.3 0.6 1 2 0.025 0.42 1.3 0.2 24 46 114 136 88 153 0.67 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 186 HTH_29 PF13551.1 112 1.8e-05 15.3 0.6 2 2 1e-05 0.00017 12.2 0.0 4 35 151 181 148 184 0.90 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 235 DDE_Tnp_IS66 PF03050.9 271 4e-13 39.5 0.3 1 1 3e-14 5.1e-13 39.2 0.3 5 132 10 144 6 174 0.87 # 8414 # 9118 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_17 - 522 TrwB_AAD_bind PF10412.4 386 4e-06 16.0 0.0 1 1 3.7e-07 6.2e-06 15.3 0.0 14 57 256 300 247 313 0.85 # 12262 # 13827 # 1 # ID=1_17;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_13 - 235 HTH_28 PF13518.1 52 9.9e-06 16.0 1.2 1 1 5.1e-06 4.3e-05 14.0 1.2 22 36 40 54 13 55 0.76 # 8414 # 9118 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 186 HTH_28 PF13518.1 52 2.2e-05 14.9 0.0 1 1 8.5e-06 7.2e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 235 DDE_Tnp_IS240 PF13610.1 140 1.3e-53 171.2 0.0 1 1 1.1e-54 1.8e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 8414 # 9118 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 244 MarR_2 PF12802.2 62 6.1e-06 16.3 0.7 1 1 7.3e-07 1.2e-05 15.4 0.3 15 62 29 75 5 75 0.82 # 385 # 1116 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_10 - 186 TrmB PF01978.14 68 9.7e-06 15.7 0.0 1 1 2.3e-06 1.9e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 244 TrmB PF01978.14 68 0.00013 12.1 0.1 1 1 6e-05 0.00051 10.2 0.0 23 55 34 67 28 72 0.85 # 385 # 1116 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_17 - 522 AAA_10 PF12846.2 304 3.1e-14 43.4 0.0 1 1 3.1e-14 5.2e-13 39.4 0.0 3 269 259 508 257 518 0.77 # 12262 # 13827 # 1 # ID=1_17;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.614 1_10 - 186 HTH_20 PF12840.2 61 7.2e-07 19.4 0.1 1 2 0.0081 0.14 2.5 0.0 33 52 8 27 6 28 0.90 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 186 HTH_20 PF12840.2 61 7.2e-07 19.4 0.1 2 2 9.1e-06 0.00015 12.0 0.1 3 43 110 177 108 180 0.91 # 6718 # 7275 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_14 - 274 AAA_13 PF13166.1 712 0.011 4.5 22.1 1 2 0.00037 0.0063 5.3 4.7 406 458 37 89 14 98 0.53 # 9459 # 10280 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 1_14 - 274 AAA_13 PF13166.1 712 0.011 4.5 22.1 2 2 0.0004 0.0067 5.2 9.2 82 158 110 170 93 203 0.50 # 9459 # 10280 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.461 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/74426f52-4f33-4a33-9d7a-37fa3cb064a5 # Target file: checkm_output/bins/pm700/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm700/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/74426f52-4f33-4a33-9d7a-37fa3cb064a5 checkm_output/bins/pm700/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:12:32 2017 # [ok]