# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 96 HTH_IclR PF09339.5 52 0.00044 12.0 0.1 1 1 1.4e-05 0.00076 11.2 0.1 5 38 31 66 28 66 0.82 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_39 - 429 Fe-ADH_2 PF13685.1 250 3e-05 15.5 0.1 1 1 8.4e-07 4.7e-05 14.8 0.1 74 109 94 131 33 139 0.74 # 25568 # 26854 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_21 - 96 HTH_38 PF13936.1 44 4.1e-05 15.2 0.1 1 1 1.1e-06 6e-05 14.7 0.1 11 39 36 65 30 66 0.89 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_21 - 96 MarR PF01047.17 59 2.6e-05 16.0 0.0 1 1 6.7e-07 3.7e-05 15.5 0.0 7 37 36 66 30 66 0.83 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_11 - 203 Pou PF00157.12 75 0.00037 12.3 0.0 1 1 1.3e-05 0.00074 11.3 0.0 9 35 5 31 2 36 0.85 # 9353 # 9961 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 1_34 - 67 zf-ribbon_3 PF13248.1 26 0.00044 11.6 9.9 1 2 0.0003 0.017 6.6 1.5 5 20 6 20 3 21 0.58 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_34 - 67 zf-ribbon_3 PF13248.1 26 0.00044 11.6 9.9 2 2 4e-05 0.0023 9.4 1.7 4 21 33 49 30 49 0.89 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_14 - 203 TIGR00573 TIGR00573 217 2.1e-18 58.3 0.1 1 1 3.3e-19 1.8e-17 55.3 0.1 9 103 21 111 16 200 0.74 # 11390 # 11998 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.504 1_25 - 354 Methyltransf_26 PF13659.1 117 1.4e-16 52.7 0.1 1 2 3e-13 1.7e-11 36.3 0.0 51 116 9 82 3 83 0.84 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_25 - 354 Methyltransf_26 PF13659.1 117 1.4e-16 52.7 0.1 2 2 2.5e-06 0.00014 14.0 0.0 1 35 309 342 309 351 0.91 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_25 - 354 UPF0020 PF01170.13 180 3.2e-05 15.6 0.2 1 2 3.3e-05 0.0018 9.9 0.0 89 116 12 38 1 52 0.68 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_25 - 354 UPF0020 PF01170.13 180 3.2e-05 15.6 0.2 2 2 0.003 0.17 3.5 0.0 26 49 306 328 299 347 0.81 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_34 - 67 zinc-ribbons_6 PF07191.7 70 0.0019 10.1 5.8 1 2 0.00014 0.0079 8.2 0.5 18 35 4 21 2 24 0.90 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_34 - 67 zinc-ribbons_6 PF07191.7 70 0.0019 10.1 5.8 2 2 0.0014 0.081 4.9 0.6 16 35 30 49 25 54 0.77 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_21 - 96 Sigma70_r4 PF04545.11 50 9.4e-05 13.8 0.0 1 1 2.5e-06 0.00014 13.3 0.0 9 41 31 67 28 71 0.84 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_34 - 67 Ribosomal_L28 PF00830.14 61 0.0058 8.6 6.6 1 2 0.0036 0.2 3.7 0.7 2 25 5 29 4 31 0.77 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_34 - 67 Ribosomal_L28 PF00830.14 61 0.0058 8.6 6.6 2 2 0.00011 0.0064 8.5 0.7 2 26 33 57 32 59 0.85 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_21 - 96 HTH_37 PF13744.1 80 1.5e-12 39.3 0.0 1 1 3.3e-14 1.9e-12 39.0 0.0 18 78 33 92 23 94 0.94 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_10 - 1325 Herpes_ori_bp PF02399.10 824 1e-08 25.6 0.0 1 2 1.8e-08 1e-06 19.0 0.0 44 198 521 675 493 685 0.80 # 5128 # 9102 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_10 - 1325 Herpes_ori_bp PF02399.10 824 1e-08 25.6 0.0 2 2 0.00051 0.029 4.3 0.0 271 351 721 812 699 816 0.76 # 5128 # 9102 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_25 - 354 N6_N4_Mtase PF01555.13 231 6.1e-44 142.3 0.0 1 1 5e-45 2.8e-43 140.1 0.0 2 229 30 346 29 348 0.87 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_12 - 76 P22_Cro PF14549.1 60 1.1e-22 71.6 0.0 1 1 2.3e-24 1.3e-22 71.5 0.0 1 56 8 65 8 71 0.93 # 10024 # 10251 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_11 - 203 HTH_25 PF13413.1 62 5.9e-08 24.4 0.0 1 1 3.8e-09 1.1e-07 23.6 0.0 1 35 11 45 11 49 0.96 # 9353 # 9961 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 1_21 - 96 HTH_25 PF13413.1 62 2.2e-05 16.2 0.0 1 1 1.6e-06 4.5e-05 15.2 0.0 1 32 37 68 37 73 0.94 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_36 - 570 Terminase_1 PF03354.10 477 1e-111 365.7 0.0 1 1 2.1e-113 1.2e-111 365.5 0.0 1 476 82 554 82 555 0.92 # 21392 # 23101 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_34 - 67 A2L_zn_ribbon PF08792.5 33 0.00013 13.6 2.0 1 2 0.00015 0.0081 7.8 0.1 1 11 1 11 1 13 0.84 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_34 - 67 A2L_zn_ribbon PF08792.5 33 0.00013 13.6 2.0 2 2 0.0009 0.051 5.3 0.2 5 11 33 39 29 41 0.81 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_21 - 96 HTH_3 PF01381.17 55 2.3e-13 41.9 0.1 1 1 1.3e-14 3.7e-13 41.3 0.1 1 49 38 86 38 91 0.94 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_11 - 203 HTH_3 PF01381.17 55 6.7e-13 40.5 0.0 1 1 3.8e-14 1.1e-12 39.8 0.0 1 55 12 66 12 66 0.98 # 9353 # 9961 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 1_21 - 96 HTH_23 PF13384.1 50 2.5e-05 16.0 0.0 1 1 1.2e-06 6.8e-05 14.6 0.0 9 36 33 65 26 67 0.80 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_21 - 96 HTH_19 PF12844.2 64 2.7e-11 35.5 0.0 1 1 1.4e-12 3.9e-11 35.0 0.0 2 55 36 89 35 92 0.91 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_11 - 203 HTH_19 PF12844.2 64 9.5e-09 27.4 0.0 1 1 5.3e-10 1.5e-08 26.8 0.0 1 49 9 57 9 72 0.85 # 9353 # 9961 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 1_34 - 67 zinc_ribbon_4 PF13717.1 36 0.008 8.0 6.5 1 2 0.0074 0.41 2.6 0.2 27 32 5 10 3 13 0.84 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_34 - 67 zinc_ribbon_4 PF13717.1 36 0.008 8.0 6.5 2 2 0.00011 0.0064 8.4 0.2 22 33 28 39 26 40 0.83 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_24 - 77 FeoC PF09012.5 69 8.9e-05 14.3 0.0 1 1 2.3e-06 0.00013 13.8 0.0 5 39 18 52 16 59 0.92 # 14759 # 14989 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_34 - 67 TIGR00595 TIGR00595 509 0.00022 11.6 4.8 1 1 4.8e-06 0.00027 11.3 4.8 216 264 3 52 1 58 0.87 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_14 - 203 TIGR01406 TIGR01406 231 3.8e-15 47.9 0.0 1 1 8.1e-17 4.5e-15 47.6 0.0 2 99 21 112 20 192 0.89 # 11390 # 11998 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.504 1_21 - 96 HTH_24 PF13412.1 48 5.3e-07 21.1 0.0 1 1 3.4e-08 9.4e-07 20.3 0.0 8 36 37 65 31 66 0.93 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_24 - 77 HTH_24 PF13412.1 48 2.5e-05 15.8 0.0 1 1 1.2e-06 3.3e-05 15.4 0.0 14 40 24 50 20 52 0.84 # 14759 # 14989 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_25 - 354 TIGR03534 TIGR03534 253 0.00022 12.5 0.1 1 1 1.4e-05 0.00079 10.7 0.1 136 173 6 47 1 102 0.74 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_21 - 96 HTH_31 PF13560.1 64 1.5e-12 39.7 0.0 1 1 6.9e-14 1.9e-12 39.4 0.0 4 57 36 88 33 92 0.94 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_11 - 203 HTH_31 PF13560.1 64 1.3e-09 30.3 0.1 1 1 7.9e-11 2.2e-09 29.5 0.1 3 55 9 60 8 65 0.92 # 9353 # 9961 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 1_52 - 204 Lambda_tail_I PF06805.7 82 5.8e-18 56.7 0.0 1 1 1.5e-19 8.4e-18 56.2 0.0 4 82 10 92 7 92 0.97 # 35437 # 36048 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_34 - 67 DZR PF12773.2 50 0.00012 14.0 7.1 1 1 8.9e-06 0.0005 12.0 7.1 14 47 5 48 2 50 0.82 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_25 - 354 MTS PF05175.9 170 0.00016 13.2 0.0 1 1 6.1e-06 0.00034 12.1 0.0 73 154 3 97 1 107 0.73 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_34 - 67 zinc_ribbon_5 PF13719.1 37 0.011 7.5 6.4 1 2 0.0064 0.36 2.7 0.2 27 32 5 10 3 14 0.82 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_34 - 67 zinc_ribbon_5 PF13719.1 37 0.011 7.5 6.4 2 2 0.00015 0.0081 7.9 0.2 22 33 28 39 26 40 0.82 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_21 - 96 HTH_26 PF13443.1 63 1.4e-08 27.0 0.0 1 1 4.7e-10 2.6e-08 26.1 0.0 5 55 41 90 37 91 0.89 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_12 - 76 HTH_17 PF12728.2 51 8.1e-06 18.2 0.0 1 1 2.9e-07 1.6e-05 17.2 0.0 4 31 19 46 18 66 0.88 # 10024 # 10251 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_34 - 67 TF_Zn_Ribbon PF08271.7 43 0.0002 12.8 1.2 1 2 0.00065 0.037 5.6 0.2 20 28 4 12 2 22 0.76 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_34 - 67 TF_Zn_Ribbon PF08271.7 43 0.0002 12.8 1.2 2 2 0.00042 0.024 6.2 0.1 16 26 28 38 26 39 0.89 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_21 - 96 HTH_11 PF08279.7 55 0.00031 12.5 0.0 1 1 1.1e-05 0.00064 11.5 0.0 3 34 32 65 30 65 0.85 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_21 - 96 MarR_2 PF12802.2 62 1.2e-06 20.3 0.0 1 1 3e-08 1.7e-06 19.8 0.0 9 41 36 66 31 66 0.92 # 13763 # 14050 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_34 - 67 zinc_ribbon_2 PF13240.1 23 0.0031 9.2 11.2 1 3 0.00022 0.012 7.3 0.2 16 21 6 11 3 13 0.68 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_34 - 67 zinc_ribbon_2 PF13240.1 23 0.0031 9.2 11.2 2 3 0.00015 0.0084 7.8 0.3 16 20 34 38 29 41 0.71 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_34 - 67 zinc_ribbon_2 PF13240.1 23 0.0031 9.2 11.2 3 3 0.038 2.1 0.2 0.1 12 18 43 49 42 49 0.68 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_14 - 203 RNase_T PF00929.19 164 2.2e-27 88.4 0.2 1 1 3.5e-28 1.9e-26 85.3 0.2 1 163 22 192 22 193 0.91 # 11390 # 11998 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.504 1_34 - 67 DNA_RNApol_7kD PF03604.8 32 2.4e-05 15.9 3.5 1 2 9.3e-05 0.0052 8.4 0.3 19 26 5 12 2 13 0.90 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_34 - 67 DNA_RNApol_7kD PF03604.8 32 2.4e-05 15.9 3.5 2 2 9.8e-05 0.0055 8.4 0.3 13 24 27 38 17 39 0.83 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_25 - 354 Methyltransf_11 PF08241.7 95 0.00013 14.6 0.0 1 1 3.6e-05 0.002 10.7 0.0 69 95 53 79 1 79 0.67 # 15307 # 16368 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_34 - 67 Zn_ribbon_recom PF13408.1 58 0.00035 12.9 10.6 1 1 8.6e-06 0.00048 12.5 10.6 6 42 4 50 2 60 0.78 # 20507 # 20707 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/6cbccc1a-9c7d-4772-b8f6-1096b112c8d1 # Target file: checkm_output/bins/pm692/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm692/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6cbccc1a-9c7d-4772-b8f6-1096b112c8d1 checkm_output/bins/pm692/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:12:25 2017 # [ok]