# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_34 - 340 ABC_tran PF00005.22 137 1e-05 17.8 0.0 1 1 3.2e-07 1.6e-05 17.2 0.0 14 64 174 222 164 310 0.78 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_25 - 268 BSP PF04450.7 205 8.8e-05 13.9 0.0 1 1 3.4e-06 0.00017 13.0 0.0 74 113 62 96 54 115 0.70 # 15767 # 16570 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.424 1_34 - 340 Sigma54_activat PF00158.21 168 2.8e-05 15.6 0.0 1 1 1.9e-06 9.2e-05 13.9 0.0 9 46 158 195 151 279 0.88 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 340 FtsK_SpoIIIE PF01580.13 205 3.4e-05 15.3 0.0 1 1 2.2e-06 5.4e-05 14.6 0.0 36 58 168 191 142 233 0.86 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_39 - 791 FtsK_SpoIIIE PF01580.13 205 0.00018 12.9 0.1 1 1 1.4e-05 0.00034 12.0 0.1 37 54 415 439 405 442 0.75 # 29051 # 31423 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_34 - 340 MobB PF03205.9 140 0.00023 12.8 0.0 1 2 2.7e-05 0.0013 10.3 0.0 4 38 175 208 173 214 0.79 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 340 MobB PF03205.9 140 0.00023 12.8 0.0 2 2 0.071 3.5 -0.8 0.0 74 98 291 317 274 325 0.72 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 340 AAA_19 PF13245.1 76 4.3e-06 18.4 0.0 1 1 1.9e-07 9.4e-06 17.3 0.0 4 35 165 195 162 221 0.82 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_20 - 220 CbiA PF01656.18 195 4.2e-19 60.6 0.0 1 1 2.3e-20 5.7e-19 60.2 0.0 1 184 5 172 5 186 0.79 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_12 - 254 CbiA PF01656.18 195 3.6e-08 24.9 1.1 1 1 3.9e-09 9.7e-08 23.5 1.1 3 174 8 175 7 204 0.62 # 5938 # 6699 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.346 1_48 - 90 Sigma70_r4_2 PF08281.7 54 2.7e-06 18.8 0.0 1 1 9.4e-08 4.6e-06 18.0 0.0 4 54 15 64 12 64 0.85 # 35592 # 35861 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.396 1_49 - 366 Rep_3 PF01051.16 222 2.4e-44 143.4 11.0 1 1 6.3e-46 3.1e-44 143.1 11.0 3 222 41 271 39 271 0.91 # 35984 # 37081 # -1 # ID=1_49;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.323 1_20 - 220 YhjQ PF06564.7 244 9.1e-05 13.8 0.0 1 2 0.0012 0.059 4.6 0.1 3 30 4 31 2 40 0.83 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_20 - 220 YhjQ PF06564.7 244 9.1e-05 13.8 0.0 2 2 0.0002 0.0097 7.1 0.0 109 154 74 117 51 127 0.84 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_34 - 340 AAA_23 PF13476.1 202 8.3e-05 14.8 0.2 1 1 3e-06 0.00015 14.0 0.2 22 39 174 191 159 195 0.90 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 340 Zeta_toxin PF06414.7 201 0.00023 12.2 0.0 1 1 9.9e-06 0.00049 11.1 0.0 15 48 170 204 156 220 0.83 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 340 AAA_30 PF13604.1 196 0.00044 11.7 0.0 1 1 1.6e-05 0.00077 11.0 0.0 10 42 164 195 161 204 0.76 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_33 - 656 TraG-D_C PF12696.2 128 1.7e-26 84.5 0.0 1 1 6.9e-28 3.4e-26 83.5 0.0 2 127 436 560 435 561 0.88 # 23238 # 25205 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_20 - 220 MipZ PF09140.6 261 8.4e-13 39.8 0.1 1 2 2.6e-08 1.3e-06 19.5 0.0 2 60 4 61 3 69 0.91 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_20 - 220 MipZ PF09140.6 261 8.4e-13 39.8 0.1 2 2 1.1e-07 5.6e-06 17.4 0.0 88 129 70 111 62 186 0.85 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_28 - 719 zinc-ribbons_6 PF07191.7 70 0.00054 11.7 0.2 1 1 2.3e-05 0.0011 10.7 0.2 3 30 634 661 632 678 0.84 # 18418 # 20574 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_34 - 340 AAA_21 PF13304.1 303 9.4e-05 14.3 0.0 1 1 3.8e-06 0.00019 13.3 0.0 3 25 175 203 174 236 0.74 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_39 - 791 Ubiquitin_3 PF14836.1 88 0.00026 12.6 0.0 1 1 1.3e-05 0.00063 11.3 0.0 19 45 700 726 687 741 0.80 # 29051 # 31423 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_20 - 220 cobW PF02492.14 178 0.00043 11.7 0.0 1 1 3.4e-05 0.0017 9.7 0.0 54 102 25 99 4 171 0.78 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_34 - 340 AAA_22 PF13401.1 131 0.00024 13.2 0.0 1 1 9.3e-06 0.00046 12.3 0.0 7 36 174 203 165 239 0.74 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 340 AAA_29 PF13555.1 62 2.3e-06 19.0 0.0 1 1 1.1e-07 5.4e-06 17.8 0.0 25 51 173 199 164 205 0.85 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 340 AAA_28 PF13521.1 163 2.6e-05 16.2 0.0 1 1 9.3e-07 4.5e-05 15.3 0.0 2 37 174 214 173 241 0.85 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_5 - 86 HTH_23 PF13384.1 50 0.00027 12.5 0.0 1 1 9e-06 0.00044 11.9 0.0 10 33 15 39 14 48 0.88 # 2775 # 3032 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_12 - 254 Fer4_NifH PF00142.13 273 2.4e-05 15.5 0.9 1 2 2.4e-06 0.00012 13.2 0.1 5 63 9 67 5 93 0.74 # 5938 # 6699 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.346 1_12 - 254 Fer4_NifH PF00142.13 273 2.4e-05 15.5 0.9 2 2 0.035 1.7 -0.5 0.0 46 85 100 137 86 141 0.82 # 5938 # 6699 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.346 1_5 - 86 HTH_19 PF12844.2 64 0.00022 13.2 0.0 1 1 4.9e-06 0.00024 13.1 0.0 2 23 13 34 12 66 0.85 # 2775 # 3032 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_34 - 340 Mg_chelatase PF01078.16 207 3.3e-05 15.0 0.0 1 1 1.2e-06 5.8e-05 14.2 0.0 18 59 167 208 154 232 0.82 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 340 G-alpha PF00503.15 389 0.0001 13.0 0.0 1 2 5.7e-06 0.00028 11.5 0.0 52 119 165 243 135 290 0.74 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 340 G-alpha PF00503.15 389 0.0001 13.0 0.0 2 2 0.055 2.7 -1.6 0.0 302 313 309 320 300 322 0.81 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_25 - 268 SprT-like PF10263.4 157 1.8e-23 74.8 0.0 1 1 5.2e-25 2.6e-23 74.3 0.0 1 126 17 153 17 266 0.89 # 15767 # 16570 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.424 1_34 - 340 ResIII PF04851.10 184 0.00018 13.3 0.0 1 1 5.8e-06 0.00029 12.6 0.0 12 50 160 195 133 207 0.78 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_33 - 656 TrwB_AAD_bind PF10412.4 386 5.8e-20 63.0 0.0 1 2 1.4e-08 3.5e-07 21.0 0.0 74 129 229 286 227 296 0.85 # 23238 # 25205 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_33 - 656 TrwB_AAD_bind PF10412.4 386 5.8e-20 63.0 0.0 2 2 2.5e-14 6.1e-13 39.9 0.0 162 369 348 563 300 577 0.74 # 23238 # 25205 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_34 - 340 TrwB_AAD_bind PF10412.4 386 0.00036 11.1 0.0 1 1 3.3e-05 0.0008 9.9 0.0 14 36 170 192 132 208 0.85 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_20 - 220 TIGR01968 TIGR01968 261 5.1e-08 24.1 1.7 1 2 6.4e-07 3.1e-05 15.0 0.8 2 39 3 40 2 48 0.94 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_20 - 220 TIGR01968 TIGR01968 261 5.1e-08 24.1 1.7 2 2 8.1e-05 0.004 8.1 0.0 101 142 70 111 66 121 0.84 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_34 - 340 AAA_18 PF13238.1 129 5.6e-06 18.6 0.0 1 1 2.2e-07 1.1e-05 17.7 0.0 2 37 175 229 175 256 0.81 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_5 - 86 HTH_31 PF13560.1 64 0.00013 14.1 0.0 1 1 3.6e-06 0.00018 13.7 0.0 6 47 15 55 13 60 0.85 # 2775 # 3032 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_34 - 340 T2SE PF00437.15 272 1e-63 206.6 0.0 1 1 2.5e-65 1.2e-63 206.4 0.0 5 266 17 315 13 320 0.95 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 340 AAA_17 PF13207.1 121 9e-06 18.5 0.0 1 1 1.3e-06 3.1e-05 16.7 0.0 3 22 175 194 173 268 0.81 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_12 - 254 AAA_17 PF13207.1 121 0.00022 13.9 0.0 1 1 1.6e-05 0.00038 13.2 0.0 3 95 8 121 6 245 0.82 # 5938 # 6699 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.346 1_20 - 220 AAA_25 PF13481.1 194 8.5e-05 13.9 0.1 1 1 2.7e-06 0.00013 13.2 0.1 34 64 3 35 1 55 0.77 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_37 - 246 Myb_DNA-bind_6 PF13921.1 60 2.7e-05 16.2 0.2 1 1 2.1e-06 0.0001 14.3 0.0 6 48 111 157 105 189 0.86 # 28183 # 28920 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.385 1_20 - 220 VirC1 PF07015.6 231 7.4e-09 26.9 0.0 1 1 2.4e-10 1.2e-08 26.2 0.0 2 96 3 93 2 110 0.74 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_33 - 656 T4SS-DNA_transf PF02534.9 469 1.6e-89 292.4 0.0 1 1 4.5e-91 2.2e-89 292.0 0.0 3 456 101 600 99 610 0.86 # 23238 # 25205 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_5 - 86 Trans_reg_C PF00486.23 77 6.6e-05 14.8 0.0 1 2 0.0013 0.065 5.1 0.0 49 61 14 26 7 41 0.83 # 2775 # 3032 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_5 - 86 Trans_reg_C PF00486.23 77 6.6e-05 14.8 0.0 2 2 0.00019 0.0095 7.8 0.0 4 27 53 76 48 78 0.84 # 2775 # 3032 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_28 - 719 Toprim_Crpt PF13342.1 62 4.9e-21 66.1 3.4 1 1 1e-22 4.9e-21 66.1 3.4 1 61 652 715 652 716 0.95 # 18418 # 20574 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_39 - 791 AAA_10 PF12846.2 304 8.8e-27 86.1 0.0 1 1 2.8e-28 1.3e-26 85.5 0.0 2 291 424 700 423 707 0.86 # 29051 # 31423 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_20 - 220 ArsA_ATPase PF02374.10 305 1.1e-06 19.7 0.5 1 1 6.2e-08 1.5e-06 19.3 0.3 2 51 3 53 2 70 0.88 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_12 - 254 ArsA_ATPase PF02374.10 305 2.6e-05 15.2 0.1 1 1 2.5e-06 6e-05 14.0 0.1 5 70 8 74 5 94 0.77 # 5938 # 6699 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.346 1_20 - 220 AAA_31 PF13614.1 157 4.9e-07 21.7 0.0 1 2 0.00014 0.0069 8.2 0.0 1 57 3 59 3 74 0.75 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_20 - 220 AAA_31 PF13614.1 157 4.9e-07 21.7 0.0 2 2 1.4e-05 0.00068 11.5 0.0 112 151 75 113 67 115 0.87 # 12676 # 13335 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_34 - 340 IstB_IS21 PF01695.12 178 2e-05 16.0 0.0 1 1 7.3e-07 3.6e-05 15.1 0.0 18 68 143 192 128 195 0.82 # 25256 # 26275 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/5c6520cd-d7d2-4329-99d5-5a46e30322ee # Target file: checkm_output/bins/pm663/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm663/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5c6520cd-d7d2-4329-99d5-5a46e30322ee checkm_output/bins/pm663/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:11:39 2017 # [ok]