# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 268 TIGR00091 TIGR00091 194 0.00012 12.4 0.0 1 1 7.7e-06 0.00025 11.4 0.0 15 76 49 110 36 125 0.80 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_18 - 351 ThiF PF00899.16 136 4.9e-34 108.4 0.2 1 1 2.6e-35 8.2e-34 107.7 0.2 1 127 114 241 114 249 0.91 # 8908 # 9960 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_29 - 215 HTH_38 PF13936.1 44 0.0026 8.7 5.3 1 2 0.062 2 -0.5 0.0 3 20 81 98 79 99 0.86 # 21188 # 21832 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_29 - 215 HTH_38 PF13936.1 44 0.0026 8.7 5.3 2 2 2.6e-05 0.00083 10.3 0.2 28 43 191 206 171 207 0.79 # 21188 # 21832 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_18 - 351 2-Hacid_dh_C PF02826.14 178 6.4e-06 16.7 0.0 1 1 3.2e-07 1e-05 16.0 0.0 26 73 105 153 84 173 0.79 # 8908 # 9960 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_30 - 221 MobB PF03205.9 140 3.3e-06 18.1 0.7 1 2 1e-05 0.00032 11.7 0.3 2 37 4 40 3 52 0.86 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_30 - 221 MobB PF03205.9 140 3.3e-06 18.1 0.7 2 2 0.0016 0.051 4.6 0.0 44 75 85 119 72 133 0.81 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_30 - 221 CbiA PF01656.18 195 1.3e-15 48.6 0.6 1 1 1.1e-16 3.5e-15 47.2 0.6 2 167 6 155 5 180 0.73 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_4 - 280 Rep_3 PF01051.16 222 6.3e-30 95.7 6.9 1 1 4.6e-31 7.4e-30 95.4 6.9 1 222 8 259 8 259 0.88 # 1874 # 2713 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_3 - 281 Rep_3 PF01051.16 222 2.9e-22 70.6 6.9 1 1 2.3e-23 3.6e-22 70.3 6.9 3 222 73 277 71 277 0.91 # 1011 # 1853 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.332 1_24 - 634 AAA_23 PF13476.1 202 3.8e-07 21.9 0.4 1 2 1.2e-08 3.8e-07 21.9 0.4 24 88 28 163 8 264 0.60 # 16327 # 18228 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_24 - 634 AAA_23 PF13476.1 202 3.8e-07 21.9 0.4 2 2 0.071 2.3 -0.2 0.5 144 153 452 461 355 623 0.56 # 16327 # 18228 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_20 - 268 Methyltransf_26 PF13659.1 117 5.9e-07 20.9 0.0 1 1 2.6e-08 8.2e-07 20.4 0.0 3 80 53 128 51 201 0.90 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_24 - 634 SMC_N PF02463.14 220 2.8e-06 18.0 1.0 1 1 3.3e-07 1.1e-05 16.1 0.4 3 46 4 45 2 55 0.81 # 16327 # 18228 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_30 - 221 MipZ PF09140.6 261 2.4e-10 31.2 1.8 1 1 2.5e-09 8e-08 22.9 1.3 2 130 4 111 3 132 0.75 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_20 - 268 UPF0020 PF01170.13 180 0.00011 13.1 0.0 1 1 6.8e-06 0.00022 12.1 0.0 58 109 70 121 23 126 0.82 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_20 - 268 Methyltransf_25 PF13649.1 101 6.5e-12 37.1 0.1 1 1 3.8e-13 1.2e-11 36.2 0.1 2 85 55 135 54 149 0.84 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_21 - 590 Ala_racemase_N PF01168.15 218 1.8e-06 18.9 0.0 1 1 9.6e-08 3.1e-06 18.1 0.0 52 155 82 192 79 216 0.87 # 11956 # 13725 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.345 1_24 - 634 AAA_21 PF13304.1 303 1.5e-14 45.9 9.2 1 2 4.7e-16 1.5e-14 45.9 9.2 4 302 28 374 26 375 0.69 # 16327 # 18228 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_24 - 634 AAA_21 PF13304.1 303 1.5e-14 45.9 9.2 2 2 0.085 2.7 -0.9 2.1 43 115 387 461 378 541 0.62 # 16327 # 18228 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_20 - 268 Ubie_methyltran PF01209.13 233 1.2e-10 32.1 0.0 1 1 5.4e-12 1.7e-10 31.6 0.0 41 154 44 156 38 178 0.84 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_21 - 590 Orn_Arg_deC_N PF02784.11 251 1.8e-22 71.0 0.0 1 1 8.5e-24 2.7e-22 70.4 0.0 14 250 49 277 37 278 0.86 # 11956 # 13725 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.345 1_30 - 221 SRP54 PF00448.17 196 0.00016 12.4 0.1 1 1 1.1e-05 0.00034 11.4 0.1 10 98 12 94 3 134 0.78 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_29 - 215 HTH_32 PF13565.1 77 0.0003 12.9 3.4 1 1 9.4e-06 0.0003 12.9 1.7 8 55 149 190 139 213 0.67 # 21188 # 21832 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_29 - 215 HTH_23 PF13384.1 50 1.3e-08 25.7 0.1 1 1 9.2e-10 2.9e-08 24.6 0.1 5 46 171 210 167 214 0.88 # 21188 # 21832 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_30 - 221 Fer4_NifH PF00142.13 273 4.9e-07 20.4 0.2 1 1 3.7e-08 1.2e-06 19.2 0.1 6 41 9 44 5 52 0.91 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_29 - 215 HTH_7 PF02796.10 45 8.1e-09 26.6 0.3 1 2 0.00081 0.013 6.8 0.0 2 26 79 104 79 105 0.86 # 21188 # 21832 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_29 - 215 HTH_7 PF02796.10 45 8.1e-09 26.6 0.3 2 2 4.2e-07 6.7e-06 17.3 0.0 1 38 165 200 165 200 0.96 # 21188 # 21832 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_27 - 161 HTH_7 PF02796.10 45 0.0002 12.6 0.3 1 1 2.7e-05 0.00043 11.5 0.0 9 27 139 157 133 159 0.87 # 19884 # 20366 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_18 - 351 Saccharop_dh PF03435.13 386 1.9e-06 18.3 0.1 1 1 8e-08 2.6e-06 17.9 0.1 1 102 118 242 118 276 0.93 # 8908 # 9960 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_20 - 268 Methyltransf_31 PF13847.1 152 2.1e-14 44.7 0.7 1 1 1.1e-15 3.4e-14 44.0 0.5 2 115 49 160 48 212 0.85 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_17 - 155 SprT-like PF10263.4 157 0.00013 13.0 0.4 1 2 1.3e-05 0.00043 11.3 0.0 1 28 28 54 28 59 0.89 # 7888 # 8352 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_17 - 155 SprT-like PF10263.4 157 0.00013 13.0 0.4 2 2 0.089 2.8 -1.2 0.1 143 150 98 112 66 121 0.47 # 7888 # 8352 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.486 1_30 - 221 TIGR01968 TIGR01968 261 7.9e-12 36.0 1.5 1 2 2.9e-10 9.2e-09 25.9 0.7 2 54 3 52 2 60 0.89 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_30 - 221 TIGR01968 TIGR01968 261 7.9e-12 36.0 1.5 2 2 5.8e-05 0.0019 8.5 0.0 101 143 69 111 63 135 0.90 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_24 - 634 TIGR00611 TIGR00611 365 2.1e-05 14.7 0.1 1 1 1.3e-06 4.3e-05 13.7 0.1 2 44 2 44 1 50 0.72 # 16327 # 18228 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_20 - 268 Methyltransf_12 PF08242.7 99 6.8e-08 24.3 0.1 1 1 6.2e-09 2e-07 22.8 0.0 1 97 55 149 55 151 0.86 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_29 - 215 HTH_28 PF13518.1 52 7.8e-06 17.2 0.1 1 1 7.6e-07 2.4e-05 15.6 0.1 4 35 175 206 172 209 0.92 # 21188 # 21832 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_18 - 351 Shikimate_DH PF01488.15 135 5.3e-05 14.7 0.5 1 1 4.7e-06 0.00015 13.2 0.4 8 57 111 164 107 244 0.84 # 8908 # 9960 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_20 - 268 TIGR03534 TIGR03534 253 9.1e-06 16.2 0.2 1 1 5.4e-07 1.7e-05 15.3 0.0 87 149 49 111 33 133 0.81 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_24 - 634 AAA_15 PF13175.1 415 8.8e-15 45.8 3.2 1 2 1.9e-09 6.1e-08 23.3 0.4 4 78 6 86 3 231 0.60 # 16327 # 18228 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_24 - 634 AAA_15 PF13175.1 415 8.8e-15 45.8 3.2 2 2 3e-09 9.7e-08 22.6 0.3 338 413 301 372 219 374 0.82 # 16327 # 18228 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_30 - 221 VirC1 PF07015.6 231 4.6e-09 26.9 0.0 1 1 2.6e-10 8.4e-09 26.1 0.0 3 55 4 56 2 61 0.92 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_29 - 215 CENP-B_N PF04218.8 53 9.5e-05 13.2 0.1 1 1 7.4e-06 0.00024 11.9 0.1 14 46 175 207 174 212 0.95 # 21188 # 21832 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_30 - 221 ArgK PF03308.11 267 0.00018 11.6 0.1 1 2 1.6e-05 0.00051 10.1 0.1 37 66 11 40 3 45 0.88 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_30 - 221 ArgK PF03308.11 267 0.00018 11.6 0.1 2 2 0.071 2.3 -1.8 0.0 154 174 88 107 63 144 0.54 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_26 - 204 CBAH PF02275.13 316 8.1e-05 13.4 0.1 1 1 3.5e-06 0.00011 12.9 0.1 125 202 117 194 111 202 0.90 # 18935 # 19546 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.348 1_20 - 268 MTS PF05175.9 170 1.1e-06 19.4 0.0 1 1 5.3e-08 1.7e-06 18.8 0.0 31 102 50 122 34 153 0.85 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_20 - 268 Methyltransf_23 PF13489.1 161 7.6e-07 20.3 0.1 1 1 5.8e-08 1.9e-06 19.0 0.1 22 119 50 159 43 228 0.72 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_30 - 221 ATP_bind_1 PF03029.12 238 0.00027 11.8 0.2 1 1 0.00015 0.0048 7.7 0.2 6 40 13 47 10 115 0.83 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_29 - 215 HTH_17 PF12728.2 51 0.0002 13.0 0.1 1 2 0.0096 0.31 2.7 0.0 16 29 89 102 88 112 0.85 # 21188 # 21832 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_29 - 215 HTH_17 PF12728.2 51 0.0002 13.0 0.1 2 2 0.00039 0.012 7.2 0.0 5 25 187 207 185 211 0.88 # 21188 # 21832 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_24 - 634 DUF2813 PF11398.3 373 2.2e-06 18.2 0.0 1 2 3.2e-05 0.001 9.4 0.0 25 87 26 86 1 94 0.77 # 16327 # 18228 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_24 - 634 DUF2813 PF11398.3 373 2.2e-06 18.2 0.0 2 2 0.00023 0.0072 6.6 0.0 262 330 309 378 286 398 0.70 # 16327 # 18228 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.355 1_20 - 268 Methyltransf_18 PF12847.2 112 1.4e-09 29.9 0.1 1 1 1.2e-10 3.7e-09 28.5 0.0 3 107 52 151 50 156 0.77 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_28 - 79 RecO_N PF11967.3 80 0.00013 13.1 0.0 1 1 5.5e-06 0.00017 12.7 0.0 16 56 6 46 1 50 0.87 # 20520 # 20756 # -1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_20 - 268 Methyltransf_11 PF08241.7 95 3.5e-16 50.9 0.0 1 1 2.2e-17 6.9e-16 49.9 0.0 1 95 55 153 55 153 0.96 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_30 - 221 ArsA_ATPase PF02374.10 305 2.2e-09 28.0 0.1 1 1 1.2e-10 3.9e-09 27.2 0.1 4 43 6 45 3 61 0.91 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_30 - 221 AAA_31 PF13614.1 157 2.5e-07 22.0 0.0 1 2 8.5e-07 2.7e-05 15.4 0.0 1 41 3 43 3 57 0.90 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_30 - 221 AAA_31 PF13614.1 157 2.5e-07 22.0 0.0 2 2 0.0021 0.068 4.4 0.0 111 151 73 112 63 115 0.83 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_20 - 268 MetW PF07021.7 193 0.00025 11.7 0.0 1 1 1.3e-05 0.00041 11.0 0.0 8 98 45 141 38 167 0.69 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_20 - 268 Pox_MCEL PF03291.11 332 2.4e-05 14.6 0.1 1 1 1.2e-06 3.8e-05 13.9 0.1 51 134 39 121 36 132 0.89 # 11168 # 11971 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_30 - 221 GTP_EFTU PF00009.22 188 7.5e-08 23.3 0.1 1 1 2.6e-09 8.5e-08 23.1 0.1 15 139 15 153 6 211 0.72 # 22213 # 22875 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/a86649f2-e5bc-482b-b6df-e032b4b190e8 # Target file: checkm_output/bins/pm661/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm661/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a86649f2-e5bc-482b-b6df-e032b4b190e8 checkm_output/bins/pm661/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:11:34 2017 # [ok]