# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 186 HTH_IclR PF09339.5 52 2.7e-06 17.7 0.2 1 1 4.6e-07 1e-05 15.9 0.0 15 40 155 180 151 181 0.85 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 186 HTH_22 PF13309.1 64 6.2e-05 13.6 1.5 1 1 1.2e-05 0.00026 11.6 0.1 35 63 156 179 143 180 0.76 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 186 HTH_40 PF14493.1 91 0.00014 12.8 0.6 1 1 2.1e-05 0.00047 11.2 0.1 7 32 152 177 147 183 0.89 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_12 - 214 HTH_38 PF13936.1 44 1.4e-09 28.2 0.1 1 1 1.3e-10 1.4e-09 28.2 0.1 7 39 175 208 169 211 0.87 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_20 - 186 HTH_38 PF13936.1 44 6.8e-07 19.6 1.4 1 1 1.2e-07 1.3e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_12 - 214 Sigma70_r4_2 PF08281.7 54 8.9e-05 12.8 0.0 1 1 9.7e-06 0.00021 11.6 0.0 24 43 187 206 181 208 0.86 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_12 - 214 Trp_repressor PF01371.14 88 0.0001 13.0 0.9 1 1 7.3e-06 0.00016 12.4 0.1 38 70 178 210 173 212 0.82 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_1 - 61 MerR_1 PF13411.1 69 6.3e-06 16.8 0.0 1 1 3.5e-07 7.6e-06 16.5 0.0 2 35 4 39 3 42 0.84 # 117 # 299 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.607 1_12 - 214 Crp PF00325.15 32 6.9e-09 25.9 0.0 1 1 6.7e-10 1.5e-08 24.9 0.0 3 22 190 209 189 211 0.95 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_20 - 186 HTH_Tnp_IS630 PF01710.11 120 2.1e-05 15.0 0.0 1 1 1.9e-06 4.3e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_12 - 214 HTH_3 PF01381.17 55 4.8e-06 17.2 0.0 1 1 2.2e-07 4.8e-06 17.2 0.0 3 32 183 212 181 213 0.84 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_1 - 61 HTH_23 PF13384.1 50 1.2e-07 22.1 0.0 1 1 2.7e-08 2e-07 21.4 0.0 19 40 4 25 2 25 0.90 # 117 # 299 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.607 1_12 - 214 HTH_23 PF13384.1 50 1.7e-07 21.6 0.0 1 1 7.6e-08 5.6e-07 20.0 0.0 3 39 174 211 172 212 0.88 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_20 - 186 HTH_23 PF13384.1 50 9.7e-06 16.0 0.3 1 1 1.3e-06 9.7e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 186 HTH_7 PF02796.10 45 5.1e-14 42.7 1.1 1 1 1e-14 1.1e-13 41.6 0.1 1 44 141 181 141 182 0.97 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_12 - 214 HTH_7 PF02796.10 45 8e-06 16.5 1.5 1 1 2.2e-06 2.4e-05 15.0 0.0 14 41 181 209 174 212 0.92 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_1 - 61 HTH_29 PF13551.1 112 1.9e-05 15.6 0.1 1 1 3.2e-06 3.6e-05 14.7 0.0 15 35 5 25 1 27 0.90 # 117 # 299 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.607 1_20 - 186 HTH_29 PF13551.1 112 2.3e-05 15.3 0.6 1 2 0.049 0.54 1.3 0.2 24 46 114 136 88 153 0.67 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 186 HTH_29 PF13551.1 112 2.3e-05 15.3 0.6 2 2 2e-05 0.00022 12.2 0.0 4 35 151 181 148 184 0.90 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_1 - 61 HTH_28 PF13518.1 52 3.1e-07 21.2 0.0 1 1 7.1e-08 5.2e-07 20.5 0.0 14 35 4 25 2 26 0.91 # 117 # 299 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.607 1_12 - 214 HTH_28 PF13518.1 52 1.8e-05 15.6 0.1 1 1 1.9e-05 0.00014 12.7 0.0 12 32 189 209 181 212 0.84 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_20 - 186 HTH_28 PF13518.1 52 3e-05 14.8 0.0 1 1 1.3e-05 9.3e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_12 - 214 HTH_24 PF13412.1 48 7e-06 16.2 0.2 1 1 7.1e-07 1.6e-05 15.1 0.2 10 36 182 208 181 211 0.91 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_12 - 214 HTH_31 PF13560.1 64 1.4e-06 19.3 1.5 1 2 0.086 1.9 -0.4 0.1 32 61 57 85 15 88 0.66 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_12 - 214 HTH_31 PF13560.1 64 1.4e-06 19.3 1.5 2 2 1.4e-07 3e-06 18.2 0.1 6 37 181 212 150 213 0.87 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_12 - 214 HTH_36 PF13730.1 55 5.9e-05 14.0 0.1 1 1 5.4e-06 0.00012 13.0 0.1 26 45 190 209 183 211 0.88 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_1 - 61 MerR PF00376.18 38 1.4e-05 15.4 0.0 1 1 8.3e-07 1.8e-05 15.1 0.0 5 36 8 40 4 41 0.89 # 117 # 299 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.607 1_12 - 214 HTH_26 PF13443.1 63 7e-07 20.2 0.1 1 2 0.012 0.26 2.4 0.0 4 38 29 68 26 82 0.71 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_12 - 214 HTH_26 PF13443.1 63 7e-07 20.2 0.1 2 2 1.3e-06 2.9e-05 15.0 0.1 1 34 180 213 180 213 0.94 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_1 - 61 HTH_17 PF12728.2 51 3.8e-06 17.9 0.0 1 1 2.4e-07 5.3e-06 17.5 0.0 7 31 8 33 5 41 0.82 # 117 # 299 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.607 1_12 - 214 HTH_11 PF08279.7 55 3.7e-05 14.2 0.1 1 1 3.9e-06 8.5e-05 13.0 0.1 6 34 181 208 176 211 0.83 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_20 - 186 TrmB PF01978.14 68 1.2e-05 15.8 0.0 1 1 1.1e-06 2.5e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_12 - 214 HTH_Crp_2 PF13545.1 76 3.7e-07 20.7 0.1 1 1 3.9e-08 8.6e-07 19.5 0.1 28 50 189 211 174 212 0.87 # 7066 # 7707 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.631 1_20 - 186 HTH_20 PF12840.2 61 4.4e-07 20.5 0.2 1 2 0.0037 0.082 3.6 0.0 33 52 8 27 4 28 0.91 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 186 HTH_20 PF12840.2 61 4.4e-07 20.5 0.2 2 2 9.1e-06 0.0002 12.0 0.1 3 43 110 177 108 180 0.91 # 14785 # 15342 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_1 - 61 Phage_AlpA PF05930.7 51 1.6e-07 21.8 0.0 1 1 1.1e-08 2.5e-07 21.2 0.0 5 30 4 29 3 31 0.90 # 117 # 299 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.607 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/60a9dcc0-e28f-406f-aac5-e38af0e4996c # Target file: checkm_output/bins/pm65/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm65/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/60a9dcc0-e28f-406f-aac5-e38af0e4996c checkm_output/bins/pm65/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:11:18 2017 # [ok]