# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_73 - 455 KaiC PF06745.8 227 1.3e-06 20.7 0.0 1 1 2e-08 2.3e-06 19.9 0.0 4 66 185 253 183 373 0.89 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_18 - 2256 N6_Mtase PF02384.11 311 2.7e-10 32.9 0.0 1 1 2.9e-11 3.3e-09 29.2 0.0 93 249 145 291 73 296 0.76 # 14891 # 21658 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_73 - 455 FtsK_SpoIIIE PF01580.13 205 0.00036 13.1 0.2 1 2 8.6e-05 0.0098 8.4 0.0 40 66 208 234 184 242 0.82 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_73 - 455 FtsK_SpoIIIE PF01580.13 205 0.00036 13.1 0.2 2 2 0.012 1.4 1.4 0.1 71 124 319 366 313 400 0.74 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_18 - 2256 Helicase_C PF00271.26 78 7.6e-09 28.5 0.0 1 1 1.6e-10 1.9e-08 27.2 0.0 16 78 1454 1517 1435 1517 0.86 # 14891 # 21658 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_2 - 191 HTH_38 PF13936.1 44 1e-05 18.1 0.7 1 1 1.2e-06 6.9e-05 15.5 0.5 2 39 140 177 139 178 0.96 # 188 # 760 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 2_4 - 334 HTH_38 PF13936.1 44 8.3e-05 15.3 0.3 1 1 7.3e-06 0.00041 13.0 0.3 12 34 157 179 151 187 0.86 # 2712 # 3713 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.444 1_74 - 276 TIGR01932 TIGR01932 318 5.4e-08 24.7 2.5 1 1 6.8e-10 7.8e-08 24.2 2.5 145 268 115 239 97 243 0.84 # 57003 # 57830 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_74 - 276 TIGR01933 TIGR01933 261 2.3e-07 23.3 0.9 1 1 2.5e-09 2.9e-07 22.9 0.9 76 201 105 233 52 243 0.73 # 57003 # 57830 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 2_4 - 334 MarR PF01047.17 59 0.00067 12.5 0.0 1 1 1.5e-05 0.0017 11.2 0.0 15 38 163 186 157 188 0.92 # 2712 # 3713 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.444 1_2 - 191 HTH_Tnp_4 PF13613.1 53 0.00057 12.5 0.0 1 1 1.1e-05 0.0013 11.4 0.0 21 39 160 178 157 179 0.89 # 188 # 760 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_73 - 455 AAA_19 PF13245.1 76 0.00094 12.1 0.0 1 1 2.5e-05 0.0028 10.5 0.0 10 48 206 241 199 264 0.82 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 2_3 - 399 CbiA PF01656.18 195 1.2e-20 66.8 0.0 1 1 1.8e-22 2.1e-20 66.0 0.0 1 144 111 294 111 322 0.75 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_77 - 755 MethyltransfD12 PF02086.10 260 1.1e-56 185.2 0.0 1 1 1.3e-58 1.4e-56 184.8 0.0 1 251 493 727 493 736 0.93 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 2_4 - 334 Sigma70_r4_2 PF08281.7 54 0.00021 13.9 0.1 1 1 5e-06 0.00057 12.5 0.1 25 50 164 189 158 191 0.91 # 2712 # 3713 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.444 2_1 - 287 Rep_3 PF01051.16 222 1.4e-28 93.0 0.0 1 1 1.7e-30 1.9e-28 92.6 0.0 2 214 19 270 18 276 0.85 # 81 # 941 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.466 1_72 - 333 Glyco_trans_1_2 PF13524.1 92 9.5e-05 15.8 0.0 1 1 3.2e-06 0.00036 13.9 0.0 6 69 245 309 236 322 0.74 # 54251 # 55249 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_49 - 198 AAA_23 PF13476.1 202 0.079 6.3 8.1 1 2 0.032 3.7 0.9 5.1 165 199 51 93 3 115 0.52 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 1_49 - 198 AAA_23 PF13476.1 202 0.079 6.3 8.1 2 2 0.00053 0.061 6.7 0.0 14 40 113 141 104 149 0.78 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 1_18 - 2256 Methyltransf_26 PF13659.1 117 2.1e-09 30.6 1.3 1 1 1.6e-10 9.2e-09 28.5 0.0 5 116 116 225 113 226 0.81 # 14891 # 21658 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_77 - 755 Methyltransf_26 PF13659.1 117 1e-05 18.6 0.0 1 1 4.8e-07 2.8e-05 17.3 0.0 1 83 511 670 511 720 0.69 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_2 - 191 CPSase_L_D3 PF02787.14 123 0.00045 13.1 0.0 1 2 7.3e-05 0.0083 9.0 0.0 26 74 91 136 64 157 0.66 # 188 # 760 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_2 - 191 CPSase_L_D3 PF02787.14 123 0.00045 13.1 0.0 2 2 0.0063 0.71 2.8 0.0 59 91 145 177 139 185 0.81 # 188 # 760 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_61 - 226 TIGR00668 TIGR00668 279 4.7e-17 55.0 0.0 1 2 9.3e-18 1.1e-15 50.6 0.0 4 72 19 85 16 155 0.88 # 46457 # 47134 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_61 - 226 TIGR00668 TIGR00668 279 4.7e-17 55.0 0.0 2 2 0.004 0.45 2.6 0.0 216 257 178 218 170 222 0.75 # 46457 # 47134 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_83 - 134 UPF0081 PF03652.10 135 0.00022 14.4 0.0 1 1 2.5e-06 0.00028 14.1 0.0 41 117 6 80 2 88 0.79 # 65569 # 65970 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.435 2_3 - 399 MipZ PF09140.6 261 6.9e-09 28.2 0.1 1 2 4.6e-05 0.0052 8.9 0.0 1 51 109 164 109 187 0.77 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 2_3 - 399 MipZ PF09140.6 261 6.9e-09 28.2 0.1 2 2 1.4e-07 1.6e-05 17.2 0.0 82 135 228 281 213 289 0.86 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_77 - 755 UPF0020 PF01170.13 180 9.5e-05 15.1 0.0 1 2 0.003 0.34 3.5 0.0 28 50 510 532 507 571 0.87 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_77 - 755 UPF0020 PF01170.13 180 9.5e-05 15.1 0.0 2 2 8.1e-05 0.0092 8.6 0.0 86 116 637 667 632 673 0.91 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_7 - 640 DivIC PF04977.10 80 0.0086 8.7 12.7 1 2 0.024 2.8 0.7 3.9 17 50 205 238 193 248 0.58 # 2894 # 4813 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 1_7 - 640 DivIC PF04977.10 80 0.0086 8.7 12.7 2 2 7.1e-06 0.00081 12.0 1.8 19 55 249 287 245 290 0.85 # 2894 # 4813 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_4 - 334 Trp_repressor PF01371.14 88 0.0003 13.8 0.7 1 1 7.4e-06 0.00084 12.4 0.1 40 69 157 185 124 194 0.84 # 2712 # 3713 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.444 2_4 - 334 KorB PF08535.5 93 4.6e-05 16.7 0.0 1 1 3.8e-06 0.00043 13.6 0.0 2 38 164 200 163 213 0.91 # 2712 # 3713 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.444 1_53 - 215 zf-C4_Topoisom PF01396.14 39 0.0004 13.0 1.0 1 1 1e-05 0.0012 11.5 1.0 3 31 185 210 184 213 0.92 # 41533 # 42177 # -1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_18 - 2256 Eco57I PF07669.6 106 4.4e-05 16.9 0.0 1 1 1.6e-06 0.00019 14.9 0.0 3 101 174 271 172 276 0.87 # 14891 # 21658 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_72 - 333 Glyco_trans_1_4 PF13692.1 135 1.8e-06 21.2 0.1 1 2 0.033 3.8 0.8 0.0 84 132 22 69 9 72 0.69 # 54251 # 55249 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_72 - 333 Glyco_trans_1_4 PF13692.1 135 1.8e-06 21.2 0.1 2 2 1.9e-07 2.2e-05 17.7 0.0 54 131 216 299 192 303 0.71 # 54251 # 55249 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 2_12 - 270 HTH_AraC PF00165.18 42 0.00015 14.7 0.0 1 1 3.8e-06 0.00044 13.2 0.0 14 37 50 73 50 76 0.91 # 10007 # 10816 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_30 - 398 HTH_23 PF13384.1 50 2.1e-07 23.6 2.9 1 2 5e-08 1.9e-06 20.5 0.0 10 47 10 49 3 52 0.87 # 30194 # 31387 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_30 - 398 HTH_23 PF13384.1 50 2.1e-07 23.6 2.9 2 2 0.044 1.7 1.6 0.1 32 45 232 245 231 250 0.82 # 30194 # 31387 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_2 - 191 HTH_23 PF13384.1 50 3.4e-06 19.7 0.2 1 1 2.8e-07 1.1e-05 18.2 0.1 3 37 144 178 142 185 0.90 # 188 # 760 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 2_4 - 334 HTH_23 PF13384.1 50 0.00022 14.0 0.0 1 1 2.2e-05 0.00082 12.2 0.0 9 45 157 191 156 196 0.84 # 2712 # 3713 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.444 1_2 - 191 HTH_7 PF02796.10 45 4.8e-16 51.5 0.5 1 1 9.1e-18 1e-15 50.5 0.5 1 43 138 180 138 182 0.98 # 188 # 760 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_30 - 398 HTH_29 PF13551.1 112 6.9e-07 22.6 0.1 1 1 1.5e-07 8.8e-06 19.0 0.0 5 77 11 77 7 100 0.77 # 30194 # 31387 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_2 - 191 HTH_29 PF13551.1 112 0.00027 14.2 2.0 1 1 4.2e-05 0.0024 11.1 1.1 39 76 125 161 116 178 0.76 # 188 # 760 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_18 - 2256 SNF2_N PF00176.18 299 3.9e-18 58.3 0.0 1 1 8.4e-20 9.6e-18 57.0 0.0 27 293 849 1262 835 1268 0.85 # 14891 # 21658 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 2_3 - 399 TIGR01968 TIGR01968 261 1.3e-06 20.7 0.0 1 2 0.00036 0.041 6.0 0.0 3 28 110 135 108 153 0.78 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 2_3 - 399 TIGR01968 TIGR01968 261 1.3e-06 20.7 0.0 2 2 5.7e-06 0.00065 11.8 0.0 102 135 235 268 225 280 0.88 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_49 - 198 AAA_18 PF13238.1 129 0.0012 12.3 1.9 1 2 0.017 2 1.9 0.4 49 114 39 94 8 115 0.60 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 1_49 - 198 AAA_18 PF13238.1 129 0.0012 12.3 1.9 2 2 5.3e-05 0.006 10.0 0.0 1 30 123 152 123 170 0.77 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 1_50 - 245 M60-like PF13402.1 307 0.00036 12.5 0.1 1 1 3.9e-06 0.00045 12.2 0.1 99 169 93 159 66 205 0.80 # 39652 # 40386 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_75 - 79 TIGR02209 TIGR02209 85 0.00051 12.8 0.1 1 2 0.042 4.8 0.0 1.8 4 21 15 32 13 39 0.75 # 57811 # 58047 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_75 - 79 TIGR02209 TIGR02209 85 0.00051 12.8 0.1 2 2 4.4e-06 0.00051 12.8 0.1 3 33 45 75 43 76 0.89 # 57811 # 58047 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_2 - 191 HTH_psq PF05225.11 45 0.00084 12.0 0.0 1 1 1.3e-05 0.0014 11.3 0.0 14 37 157 179 151 187 0.84 # 188 # 760 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_72 - 333 Glycos_transf_1 PF00534.15 172 1.3e-07 24.2 0.0 1 1 1.9e-09 2.2e-07 23.5 0.0 85 159 231 304 226 318 0.83 # 54251 # 55249 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_30 - 398 HTH_28 PF13518.1 52 4.9e-09 29.2 0.1 1 2 8.1e-09 4.6e-07 22.9 0.0 2 41 7 48 6 61 0.81 # 30194 # 31387 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_30 - 398 HTH_28 PF13518.1 52 4.9e-09 29.2 0.1 2 2 0.017 0.94 2.7 0.0 27 45 232 250 229 254 0.87 # 30194 # 31387 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_2 - 191 HTH_28 PF13518.1 52 1.2e-05 18.3 0.2 1 1 4.8e-07 2.7e-05 17.2 0.2 4 32 150 178 147 179 0.93 # 188 # 760 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_49 - 198 TIGR00041 TIGR00041 196 0.00046 12.7 1.9 1 2 0.00012 0.013 7.9 0.2 117 185 31 111 25 115 0.72 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 1_49 - 198 TIGR00041 TIGR00041 196 0.00046 12.7 1.9 2 2 0.0015 0.18 4.3 0.1 4 40 120 156 117 165 0.82 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 1_73 - 455 DnaB_C PF03796.10 259 1.6e-109 357.8 0.3 1 1 2e-111 2.3e-109 357.3 0.3 1 257 188 445 188 447 0.98 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_75 - 79 FtsL PF04999.8 97 0.00016 14.5 0.1 1 2 0.044 5 0.1 0.8 14 32 14 32 6 37 0.72 # 57811 # 58047 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_75 - 79 FtsL PF04999.8 97 0.00016 14.5 0.1 2 2 1.4e-06 0.00016 14.5 0.1 12 44 41 75 33 77 0.78 # 57811 # 58047 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 2_4 - 334 HTH_24 PF13412.1 48 1.6e-07 23.8 0.5 1 2 4.3e-08 2.4e-06 20.0 0.0 14 39 162 187 158 190 0.93 # 2712 # 3713 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.444 2_4 - 334 HTH_24 PF13412.1 48 1.6e-07 23.8 0.5 2 2 0.035 2 1.1 0.1 2 17 250 265 249 268 0.83 # 2712 # 3713 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.444 1_30 - 398 HTH_24 PF13412.1 48 3.6e-05 16.2 0.0 1 1 1.6e-06 9.4e-05 14.9 0.0 12 44 13 45 11 45 0.94 # 30194 # 31387 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_7 - 640 Kinesin-relat_1 PF12711.2 86 0.0019 11.7 5.0 1 2 0.004 0.46 4.1 0.5 8 42 196 230 191 236 0.81 # 2894 # 4813 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 1_7 - 640 Kinesin-relat_1 PF12711.2 86 0.0019 11.7 5.0 2 2 0.00018 0.021 8.4 0.4 7 37 251 281 246 284 0.90 # 2894 # 4813 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 1_9 - 996 DUF2250 PF10007.4 93 0.00089 12.3 0.0 1 1 9.7e-05 0.011 8.8 0.0 7 76 279 348 274 350 0.94 # 5188 # 8175 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.494 1_73 - 455 AAA_25 PF13481.1 194 9.1e-15 47.6 0.1 1 1 1.5e-16 1.7e-14 46.7 0.1 14 190 188 368 174 372 0.82 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_73 - 455 AAA_33 PF13671.1 143 0.00022 14.2 0.2 1 3 0.088 10 -0.9 0.0 46 79 134 172 102 181 0.69 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_73 - 455 AAA_33 PF13671.1 143 0.00022 14.2 0.2 2 3 3.9e-05 0.0045 10.0 0.0 2 42 209 248 208 327 0.60 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_73 - 455 AAA_33 PF13671.1 143 0.00022 14.2 0.2 3 3 0.036 4.1 0.4 0.1 88 123 350 383 331 394 0.72 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_2 - 191 CENP-B_N PF04218.8 53 7.1e-05 15.3 0.0 1 1 1.4e-06 0.00016 14.2 0.0 4 41 140 177 138 184 0.92 # 188 # 760 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_49 - 198 APS_kinase PF01583.15 157 0.00025 13.8 0.0 1 1 5.1e-06 0.00058 12.6 0.0 4 40 122 158 119 168 0.91 # 39062 # 39655 # -1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.473 1_77 - 755 DNA_methylase PF00145.12 335 1.9e-39 128.8 0.0 1 3 1.2e-25 1.4e-23 76.6 0.0 5 119 8 135 6 145 0.92 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_77 - 755 DNA_methylase PF00145.12 335 1.9e-39 128.8 0.0 2 3 1.4e-15 1.6e-13 43.5 0.0 136 308 192 406 187 416 0.57 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_77 - 755 DNA_methylase PF00145.12 335 1.9e-39 128.8 0.0 3 3 0.001 0.11 4.5 0.0 312 334 441 463 430 464 0.88 # 59805 # 62069 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 2_21 - 1230 UBA_4 PF14555.1 43 0.00022 13.9 0.1 1 1 1.2e-05 0.0014 11.3 0.0 20 36 919 935 918 940 0.93 # 16937 # 20626 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_21 - 374 RuvA_C PF07499.8 47 0.00011 15.5 0.6 1 2 0.00029 0.033 7.5 0.0 15 40 15 41 15 42 0.96 # 22415 # 23536 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.369 1_21 - 374 RuvA_C PF07499.8 47 0.00011 15.5 0.6 2 2 0.0012 0.14 5.6 0.1 15 39 313 336 313 339 0.84 # 22415 # 23536 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.369 2_12 - 270 MarR_2 PF12802.2 62 0.00046 13.0 0.0 1 1 2.5e-05 0.0014 11.4 0.0 27 61 50 84 44 89 0.84 # 10007 # 10816 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 2_4 - 334 MarR_2 PF12802.2 62 0.00054 12.7 0.0 1 1 2.3e-05 0.0013 11.5 0.0 17 47 163 191 156 202 0.86 # 2712 # 3713 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.444 2_12 - 270 HTH_Crp_2 PF13545.1 76 0.00091 12.1 0.0 1 1 1.6e-05 0.0018 11.2 0.0 21 60 37 76 21 88 0.81 # 10007 # 10816 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_7 - 640 AAA_13 PF13166.1 712 0.012 7.0 10.2 1 2 1.4e-05 0.0016 10.0 5.7 378 466 199 282 158 283 0.66 # 2894 # 4813 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 1_7 - 640 AAA_13 PF13166.1 712 0.012 7.0 10.2 2 2 0.056 6.4 -1.9 0.1 369 398 564 593 528 634 0.49 # 2894 # 4813 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.517 2_3 - 399 ArsA_ATPase PF02374.10 305 0.0005 12.2 0.0 1 1 1.2e-05 0.0013 10.8 0.0 4 52 111 166 108 255 0.74 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 2_3 - 399 AAA_31 PF13614.1 157 6.1e-07 22.6 0.0 1 2 0.0009 0.051 6.6 0.0 2 63 110 176 109 222 0.75 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 2_3 - 399 AAA_31 PF13614.1 157 6.1e-07 22.6 0.0 2 2 6e-06 0.00034 13.7 0.0 108 138 235 265 231 277 0.85 # 1499 # 2695 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_73 - 455 AAA_31 PF13614.1 157 7e-05 15.9 0.0 1 1 2.9e-06 0.00017 14.7 0.0 5 43 210 249 208 260 0.89 # 55249 # 56613 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_13 - 163 SSB PF00436.20 104 1.7e-42 136.7 0.2 1 1 1.9e-44 2.2e-42 136.3 0.2 1 100 6 109 6 113 0.96 # 10586 # 11074 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.501 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/769144c4-f153-4045-8f44-754017c2223d # Target file: checkm_output/bins/pm648/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm648/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/769144c4-f153-4045-8f44-754017c2223d checkm_output/bins/pm648/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:11:18 2017 # [ok]