# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_5 - 228 Cons_hypoth95 PF03602.10 183 9.7e-06 17.7 0.0 1 2 0.00035 0.03 6.4 0.0 112 147 18 55 9 82 0.66 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_5 - 228 Cons_hypoth95 PF03602.10 183 9.7e-06 17.7 0.0 2 2 3.9e-05 0.0033 9.5 0.0 41 62 162 183 145 219 0.78 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_5 - 228 TIGR00095 TIGR00095 194 0.00018 13.6 0.0 1 2 0.0011 0.089 4.8 0.0 123 139 19 35 8 79 0.69 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_5 - 228 TIGR00095 TIGR00095 194 0.00018 13.6 0.0 2 2 0.00024 0.021 6.8 0.0 53 86 164 199 155 218 0.77 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 6_4 - 188 N6_Mtase PF02384.11 311 0.00037 12.3 0.0 1 1 1.6e-05 0.0014 10.4 0.0 28 64 32 68 21 83 0.87 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_20 - 877 FtsK_SpoIIIE PF01580.13 205 1.2e-05 17.5 0.1 1 2 2e-06 0.00017 13.7 0.0 39 63 477 505 464 508 0.84 # 16880 # 19510 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 877 FtsK_SpoIIIE PF01580.13 205 1.2e-05 17.5 0.1 2 2 0.015 1.3 1.1 0.0 75 166 531 626 530 669 0.82 # 16880 # 19510 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 877 MobB PF03205.9 140 0.00062 12.2 0.1 1 1 5.4e-05 0.0023 10.3 0.0 4 37 484 516 482 524 0.79 # 16880 # 19510 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_2 - 754 MobB PF03205.9 140 0.00091 11.6 0.0 1 1 5.4e-05 0.0023 10.3 0.0 7 34 192 219 188 225 0.89 # 375 # 2636 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 2_15 - 1627 AAA_19 PF13245.1 76 8.6e-08 24.6 1.6 1 1 8.2e-09 3.5e-07 22.7 0.3 7 76 851 917 844 917 0.74 # 11483 # 16363 # -1 # ID=2_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 1_26 - 123 AAA_19 PF13245.1 76 0.00057 12.3 0.0 1 1 2.2e-05 0.00092 11.7 0.0 13 37 91 115 82 122 0.78 # 22049 # 22417 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_26 - 123 KTI12 PF08433.5 270 0.00072 11.4 0.1 1 1 1.4e-05 0.0012 10.7 0.1 5 30 92 117 91 120 0.87 # 22049 # 22417 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 3_5 - 228 MethyltransfD12 PF02086.10 260 0.00038 12.6 0.0 1 2 0.016 1.4 0.9 0.0 175 188 18 31 8 85 0.84 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_5 - 228 MethyltransfD12 PF02086.10 260 0.00038 12.6 0.0 2 2 4e-05 0.0034 9.5 0.0 20 46 163 189 148 197 0.78 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 7_1 - 235 rve PF00665.21 120 2.8e-13 42.7 0.1 1 2 0.015 1.3 1.9 0.0 78 102 27 49 6 54 0.84 # 53 # 757 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 7_1 - 235 rve PF00665.21 120 2.8e-13 42.7 0.1 2 2 6.1e-14 5.2e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 53 # 757 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_2 - 120 AAA_23 PF13476.1 202 0.0031 10.5 7.3 1 1 4e-05 0.0034 10.4 7.3 143 196 44 106 6 111 0.65 # 974 # 1333 # 1 # ID=5_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.603 6_4 - 188 Methyltransf_26 PF13659.1 117 9e-15 47.5 0.0 1 1 3.7e-16 1.6e-14 46.7 0.0 2 114 52 147 51 150 0.91 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_5 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 37.0 0.0 1 2 6.9e-07 2.9e-05 16.8 0.0 57 114 7 71 2 74 0.72 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_5 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 37.0 0.0 2 2 2.6e-07 1.1e-05 18.1 0.0 4 44 167 206 164 221 0.82 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 2_15 - 1627 AAA_30 PF13604.1 196 3.4e-45 146.7 15.7 1 3 0.037 1.6 0.9 0.0 41 86 93 139 88 152 0.84 # 11483 # 16363 # -1 # ID=2_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 2_15 - 1627 AAA_30 PF13604.1 196 3.4e-45 146.7 15.7 2 3 1e-05 0.00042 12.6 4.5 7 146 290 421 286 431 0.82 # 11483 # 16363 # -1 # ID=2_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 2_15 - 1627 AAA_30 PF13604.1 196 3.4e-45 146.7 15.7 3 3 5.8e-44 2.4e-42 137.4 1.6 1 186 838 1026 838 1030 0.94 # 11483 # 16363 # -1 # ID=2_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 1_2 - 754 AAA_30 PF13604.1 196 0.00054 12.2 0.0 1 1 2.7e-05 0.0011 11.2 0.0 21 57 188 224 180 230 0.85 # 375 # 2636 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 7_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00021 13.9 0.3 1 1 5.4e-06 0.00046 12.9 0.3 4 51 6 58 4 63 0.79 # 53 # 757 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 754 TraG-D_C PF12696.2 128 6.8e-21 67.2 0.0 1 1 1.4e-22 1.2e-20 66.3 0.0 1 127 419 541 419 542 0.86 # 375 # 2636 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 7_1 - 235 DDE_3 PF13358.1 146 0.00058 12.3 0.0 1 1 2.1e-05 0.0018 10.7 0.0 32 90 82 141 59 146 0.87 # 53 # 757 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_5 - 228 UPF0020 PF01170.13 180 1.7e-05 17.1 0.0 1 2 0.00044 0.037 6.2 0.0 103 117 17 31 4 83 0.79 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_5 - 228 UPF0020 PF01170.13 180 1.7e-05 17.1 0.0 2 2 6.4e-05 0.0054 9.0 0.0 28 54 163 188 158 220 0.67 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 6_4 - 188 Methyltransf_25 PF13649.1 101 0.00012 15.2 0.0 1 1 2.1e-06 0.00018 14.6 0.0 1 101 54 142 54 142 0.81 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_28 - 484 DivIC PF04977.10 80 0.00079 11.6 4.6 1 1 1.9e-05 0.0016 10.7 4.6 17 66 76 124 72 125 0.92 # 22912 # 24363 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.578 4_7 - 653 KorB PF08535.5 93 1.4e-05 17.9 0.0 1 1 6e-07 5.1e-05 16.1 0.0 2 43 152 193 151 204 0.93 # 4023 # 5981 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 3_5 - 228 N6_N4_Mtase PF01555.13 231 8.9e-37 119.4 0.0 1 2 1.9e-15 1.6e-13 43.3 0.0 1 114 21 124 21 138 0.90 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_5 - 228 N6_N4_Mtase PF01555.13 231 8.9e-37 119.4 0.0 2 2 5.3e-25 4.5e-23 74.6 0.0 169 228 141 200 126 203 0.90 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_2 - 327 Hydantoinase_A PF01968.13 290 3.5e-08 25.5 1.4 1 2 7.8e-07 6.6e-05 14.7 0.1 72 97 164 189 152 199 0.82 # 840 # 1820 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 3_2 - 327 Hydantoinase_A PF01968.13 290 3.5e-08 25.5 1.4 2 2 3.2e-05 0.0028 9.4 0.1 209 265 247 303 201 323 0.78 # 840 # 1820 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_2 - 754 AAA_16 PF13191.1 185 3.7e-06 19.7 0.0 1 1 4.2e-07 1.8e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 375 # 2636 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_26 - 123 AAA_16 PF13191.1 185 0.0011 11.6 0.1 1 1 4.6e-05 0.0019 10.8 0.1 22 48 86 112 80 119 0.88 # 22049 # 22417 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_6 - 941 Orn_Arg_deC_N PF02784.11 251 0.00086 11.2 0.0 1 1 1e-05 0.00086 11.2 0.0 171 212 610 650 598 684 0.76 # 4908 # 7730 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.512 7_1 - 235 HTH_32 PF13565.1 77 1.1e-06 22.1 0.2 1 1 5.6e-08 4.8e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 53 # 757 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_7 - 653 HTH_23 PF13384.1 50 5.6e-07 21.8 0.7 1 1 1.4e-07 6.1e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 4023 # 5981 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 7_1 - 235 HTH_23 PF13384.1 50 5.2e-06 18.8 0.7 1 2 0.032 1.3 1.6 0.0 7 27 11 35 7 36 0.69 # 53 # 757 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 7_1 - 235 HTH_23 PF13384.1 50 5.2e-06 18.8 0.7 2 2 3.7e-06 0.00016 14.0 0.1 28 42 41 55 40 62 0.87 # 53 # 757 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_3 - 180 Ribosomal_S27e PF01667.12 55 0.00016 13.9 1.1 1 1 3.5e-06 0.00029 13.1 1.1 5 33 71 99 68 104 0.90 # 1759 # 2298 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 2_3 - 180 zinc_ribbon_4 PF13717.1 36 8.5e-05 14.9 0.2 1 2 0.00015 0.013 8.0 0.1 2 14 73 85 73 87 0.84 # 1759 # 2298 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 2_3 - 180 zinc_ribbon_4 PF13717.1 36 8.5e-05 14.9 0.2 2 2 0.0017 0.15 4.6 0.0 5 15 95 105 94 114 0.81 # 1759 # 2298 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 4_7 - 653 HTH_29 PF13551.1 112 0.00021 14.1 0.2 1 1 1e-05 0.00086 12.2 0.0 4 37 145 178 142 234 0.85 # 4023 # 5981 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 6_4 - 188 Met_10 PF02475.11 200 0.00083 11.6 0.0 1 1 1.3e-05 0.0011 11.2 0.0 99 182 48 125 38 145 0.77 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 7_1 - 235 DDE_Tnp_IS66 PF03050.9 271 2e-12 39.5 0.3 1 1 3e-14 2.5e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 53 # 757 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_4 - 188 Methyltransf_31 PF13847.1 152 4.3e-07 22.3 0.0 1 1 6.3e-09 5.4e-07 22.0 0.0 5 119 52 162 48 183 0.82 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_2 - 754 TrwB_AAD_bind PF10412.4 386 3.3e-150 492.6 0.0 1 1 9.5e-152 4e-150 492.3 0.0 2 386 172 561 171 561 0.99 # 375 # 2636 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_20 - 877 TrwB_AAD_bind PF10412.4 386 4.6e-07 21.4 0.2 1 2 4.8e-08 2e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 16880 # 19510 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 877 TrwB_AAD_bind PF10412.4 386 4.6e-07 21.4 0.2 2 2 0.054 2.3 -0.7 0.1 261 317 714 770 706 773 0.92 # 16880 # 19510 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_2 - 327 MutL PF13941.1 457 0.00015 12.8 0.0 1 1 2.7e-06 0.00023 12.2 0.0 231 281 151 202 130 286 0.64 # 840 # 1820 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 3_5 - 228 Methyltransf_15 PF09445.5 164 0.0007 11.8 0.0 1 2 0.042 3.6 -0.2 0.0 53 79 4 29 2 33 0.90 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_5 - 228 Methyltransf_15 PF09445.5 164 0.0007 11.8 0.0 2 2 4.7e-05 0.004 9.4 0.0 3 31 166 194 164 206 0.87 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 6_4 - 188 Methyltransf_12 PF08242.7 99 7e-05 16.0 0.0 1 1 1.5e-06 0.00013 15.2 0.0 1 99 55 144 55 144 0.85 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 6_4 - 188 Methyltrans_SAM PF10672.4 286 0.00067 11.2 0.0 1 1 1.1e-05 0.00095 10.7 0.0 196 261 113 173 100 180 0.78 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_20 - 877 DUF87 PF01935.12 229 2e-07 23.7 0.0 1 1 6.9e-09 5.9e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 16880 # 19510 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 7_1 - 235 HTH_28 PF13518.1 52 4.9e-05 16.0 1.2 1 1 2.5e-06 0.00022 14.0 1.2 22 36 40 54 13 55 0.76 # 53 # 757 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_4 - 188 TIGR03533 TIGR03533 284 3.8e-06 18.8 0.0 1 1 7.2e-08 6.1e-06 18.1 0.0 116 210 45 133 37 140 0.87 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 6_4 - 188 TIGR03534 TIGR03534 253 6e-10 31.3 0.0 1 1 8.2e-12 6.9e-10 31.1 0.0 81 178 45 134 11 151 0.86 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 2_15 - 1627 UvrD_C_2 PF13538.1 104 2.5e-08 26.7 0.7 1 2 0.012 1 2.3 0.0 6 44 1097 1135 1093 1164 0.75 # 11483 # 16363 # -1 # ID=2_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 2_15 - 1627 UvrD_C_2 PF13538.1 104 2.5e-08 26.7 0.7 2 2 1.3e-08 1.1e-06 21.5 0.2 3 102 1211 1314 1209 1316 0.79 # 11483 # 16363 # -1 # ID=2_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 6_4 - 188 TIGR00755 TIGR00755 256 3.7e-09 28.6 0.0 1 1 5.7e-11 4.9e-09 28.2 0.0 8 104 29 122 25 133 0.90 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_2 - 327 StbA PF06406.6 318 2.5e-151 495.6 0.1 1 1 3.3e-153 2.8e-151 495.5 0.1 1 318 1 324 1 324 0.98 # 840 # 1820 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_2 - 754 AAA_17 PF13207.1 121 0.00028 14.4 0.0 1 1 1.2e-05 0.001 12.6 0.0 3 27 189 217 187 262 0.68 # 375 # 2636 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_20 - 877 Pox_A32 PF04665.7 241 0.00062 11.7 0.1 1 1 2.3e-05 0.002 10.1 0.0 7 38 474 505 470 520 0.85 # 16880 # 19510 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_2 - 327 Hydant_A_N PF05378.8 176 0.0022 10.1 4.1 1 2 0.013 1.1 1.4 0.5 94 126 114 146 2 155 0.65 # 840 # 1820 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 3_2 - 327 Hydant_A_N PF05378.8 176 0.0022 10.1 4.1 2 2 6.3e-05 0.0053 8.9 0.2 2 48 172 216 171 227 0.81 # 840 # 1820 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_2 - 754 T4SS-DNA_transf PF02534.9 469 6.5e-10 30.7 0.0 1 1 3.9e-11 1.7e-09 29.4 0.0 264 361 382 476 198 500 0.82 # 375 # 2636 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_20 - 877 T4SS-DNA_transf PF02534.9 469 0.00028 12.2 0.0 1 2 0.0047 0.2 2.8 0.0 105 182 534 605 471 624 0.82 # 16880 # 19510 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_20 - 877 T4SS-DNA_transf PF02534.9 469 0.00028 12.2 0.0 2 2 0.00023 0.0096 7.1 0.0 319 378 712 770 663 772 0.91 # 16880 # 19510 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 6_4 - 188 MTS PF05175.9 170 1.4e-09 30.2 0.0 1 1 2.3e-11 1.9e-09 29.8 0.0 31 141 50 149 41 165 0.85 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 2_3 - 180 zinc_ribbon_5 PF13719.1 37 4.2e-05 15.8 0.1 1 2 9.4e-05 0.008 8.5 0.0 2 14 73 85 72 87 0.84 # 1759 # 2298 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 2_3 - 180 zinc_ribbon_5 PF13719.1 37 4.2e-05 15.8 0.1 2 2 0.0013 0.11 4.8 0.0 5 15 95 105 94 115 0.81 # 1759 # 2298 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 7_1 - 235 DDE_Tnp_IS240 PF13610.1 140 6.5e-53 171.2 0.0 1 1 1.1e-54 9e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 53 # 757 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_3 - 180 Zn-ribbon_8 PF09723.5 42 0.003 10.2 4.7 1 1 8.4e-05 0.0071 9.0 4.7 7 35 75 101 74 105 0.90 # 1759 # 2298 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_20 - 877 AAA_10 PF12846.2 304 3.5e-49 160.5 0.0 1 1 1.5e-50 6.2e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 16880 # 19510 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_2 - 754 AAA_10 PF12846.2 304 1.3e-10 33.8 0.0 1 1 6.4e-11 2.7e-09 29.5 0.0 3 296 187 494 186 500 0.68 # 375 # 2636 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 6_4 - 188 RrnaAD PF00398.15 262 6.8e-09 27.7 0.0 1 1 1e-10 8.5e-09 27.4 0.0 9 105 29 120 24 148 0.86 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 6_4 - 188 Methyltransf_18 PF12847.2 112 3.3e-10 33.3 0.0 1 1 8.1e-12 6.9e-10 32.2 0.0 4 109 53 146 50 148 0.88 # 2131 # 2694 # 1 # ID=6_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_5 - 228 Methyltransf_11 PF08241.7 95 0.00052 13.2 0.0 1 2 0.0024 0.2 4.9 0.0 78 93 53 68 47 70 0.84 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 3_5 - 228 Methyltransf_11 PF08241.7 95 0.00052 13.2 0.0 2 2 0.0014 0.12 5.7 0.0 5 54 172 220 168 226 0.82 # 3956 # 4639 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 5_5 - 272 Pterin_bind PF00809.17 210 2.4e-60 196.1 0.0 1 1 3.4e-62 2.9e-60 195.9 0.0 1 209 10 216 10 217 0.98 # 2320 # 3135 # 1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.608 2_3 - 180 NOB1_Zn_bind PF08772.6 73 0.00035 13.1 0.4 1 1 7.8e-06 0.00066 12.2 0.4 10 36 74 104 71 125 0.75 # 1759 # 2298 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 3_1 - 112 DHDPS PF00701.17 289 0.00067 10.9 0.0 1 1 9.2e-06 0.00078 10.7 0.0 21 77 13 67 2 76 0.86 # 167 # 502 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_15 - 1627 AAA_11 PF13086.1 236 0.00025 13.3 0.0 1 1 2.9e-06 0.00025 13.3 0.0 2 74 839 908 838 928 0.80 # 11483 # 16363 # -1 # ID=2_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 4_9 - 176 SSB PF00436.20 104 2.8e-41 132.3 0.3 1 1 4.2e-43 3.6e-41 132.0 0.3 1 101 6 109 6 112 0.96 # 6334 # 6861 # -1 # ID=4_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/fed9f4bf-00a1-4f2d-abc4-5f1d78dd2aca # Target file: checkm_output/bins/pm639/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm639/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fed9f4bf-00a1-4f2d-abc4-5f1d78dd2aca checkm_output/bins/pm639/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:11:07 2017 # [ok]