# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_38 - 228 Cons_hypoth95 PF03602.10 183 2.6e-05 16.9 0.0 1 2 0.00065 0.08 5.5 0.0 114 146 20 54 10 82 0.65 # 27498 # 28181 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 228 Cons_hypoth95 PF03602.10 183 2.6e-05 16.9 0.0 2 2 4e-05 0.0049 9.4 0.0 41 62 162 183 145 218 0.78 # 27498 # 28181 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_72 - 341 HTH_IclR PF09339.5 52 2.7e-06 20.2 0.1 1 1 5.9e-08 7.3e-06 18.8 0.1 15 40 14 39 13 40 0.95 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_106 - 518 ABC_tran PF00005.22 137 9.2e-05 16.0 0.0 1 1 8e-06 0.00033 14.2 0.0 12 37 226 251 217 288 0.81 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_93 - 383 ABC_tran PF00005.22 137 0.00014 15.4 0.0 1 1 6.5e-06 0.00027 14.5 0.0 16 35 162 181 152 211 0.87 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_71 - 260 ABC_tran PF00005.22 137 0.00018 15.0 0.3 1 1 3.6e-05 0.0015 12.1 0.0 8 30 99 121 93 136 0.86 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_72 - 341 HTH_22 PF13309.1 64 0.0008 12.4 0.0 1 1 1.3e-05 0.0016 11.4 0.0 46 64 21 39 10 39 0.89 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_38 - 228 TIGR00095 TIGR00095 194 0.00037 13.1 0.0 1 2 0.0015 0.18 4.3 0.0 124 138 20 34 7 79 0.74 # 27498 # 28181 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 228 TIGR00095 TIGR00095 194 0.00037 13.1 0.0 2 2 0.00024 0.03 6.8 0.0 53 86 164 199 155 218 0.77 # 27498 # 28181 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_72 - 341 HTH_AsnC-type PF13404.1 42 0.0007 12.4 0.0 1 1 1.5e-05 0.0018 11.0 0.0 18 36 18 36 15 40 0.91 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_72 - 341 rve_3 PF13683.1 67 0.00052 12.8 0.1 1 1 1.6e-05 0.002 10.9 0.0 6 65 220 287 215 288 0.87 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_71 - 260 Sigma54_activat PF00158.21 168 0.00017 14.3 0.1 1 1 8.2e-06 0.001 11.8 0.1 18 53 98 133 82 198 0.72 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_72 - 341 HTH_40 PF14493.1 91 0.00022 14.6 0.0 1 1 3.8e-06 0.00047 13.6 0.0 4 35 8 39 5 69 0.91 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_72 - 341 HTH_38 PF13936.1 44 1.5e-11 36.9 0.4 1 1 5.2e-13 6.3e-11 34.9 0.2 6 41 3 38 2 40 0.94 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_93 - 383 MobB PF03205.9 140 2.3e-05 17.3 0.0 1 2 0.017 2 1.3 0.0 14 60 61 108 61 127 0.88 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_93 - 383 MobB PF03205.9 140 2.3e-05 17.3 0.0 2 2 3.1e-06 0.00038 13.4 0.0 5 26 162 183 160 193 0.90 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_72 - 341 TetR_N PF00440.18 47 0.0011 11.8 0.0 1 1 1.7e-05 0.0021 10.9 0.0 16 36 17 37 16 43 0.86 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_106 - 518 AAA_19 PF13245.1 76 0.00012 15.1 0.0 1 1 5.3e-06 0.00032 13.7 0.0 10 46 226 259 218 268 0.79 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_71 - 260 AAA_19 PF13245.1 76 0.0005 13.0 0.0 1 1 2.1e-05 0.0013 11.7 0.0 10 37 103 129 96 154 0.81 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_29 - 215 CbiA PF01656.18 195 1.5e-09 30.7 0.1 1 1 1.8e-11 2.2e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 20993 # 21637 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_38 - 228 MethyltransfD12 PF02086.10 260 0.00038 13.1 0.0 1 2 0.011 1.3 1.5 0.0 174 188 17 31 8 90 0.84 # 27498 # 28181 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 228 MethyltransfD12 PF02086.10 260 0.00038 13.1 0.0 2 2 4e-05 0.0049 9.5 0.0 20 46 163 189 148 197 0.78 # 27498 # 28181 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_122 - 96 Sigma70_r4_2 PF08281.7 54 6e-08 25.3 0.1 1 1 2.9e-09 1.8e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 102808 # 103095 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_72 - 341 Sigma70_r4_2 PF08281.7 54 1e-07 24.6 0.0 1 1 3.7e-09 2.3e-07 23.4 0.0 25 48 16 39 12 40 0.94 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_72 - 341 rve PF00665.21 120 1.8e-22 72.9 0.0 1 1 2.8e-24 3.4e-22 72.0 0.0 3 118 118 242 117 244 0.96 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_50 - 392 zf-ribbon_3 PF13248.1 26 0.00089 11.7 3.8 1 2 0.0043 0.53 2.9 1.5 16 25 321 330 319 332 0.72 # 36110 # 37285 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_50 - 392 zf-ribbon_3 PF13248.1 26 0.00089 11.7 3.8 2 2 7.1e-05 0.0087 8.6 0.0 4 13 342 351 340 357 0.80 # 36110 # 37285 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_71 - 260 AFG1_ATPase PF03969.11 362 8.9e-05 14.6 0.2 1 1 2.8e-06 0.00034 12.6 0.2 63 216 103 254 43 259 0.72 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_54 - 216 Terminase_5 PF06056.7 58 0.00054 12.8 0.0 1 1 2.5e-05 0.0016 11.3 0.0 16 44 115 143 113 150 0.93 # 39876 # 40523 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_72 - 341 Terminase_5 PF06056.7 58 0.00076 12.3 0.0 1 1 2.8e-05 0.0017 11.1 0.0 9 36 13 40 9 44 0.85 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_106 - 518 AAA_23 PF13476.1 202 0.00016 15.3 0.2 1 1 9.7e-06 0.0006 13.4 0.0 20 38 226 244 208 249 0.84 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_93 - 383 AAA_23 PF13476.1 202 0.00027 14.5 0.0 1 1 7.3e-06 0.00045 13.8 0.0 19 40 157 178 142 209 0.83 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_4 - 283 TIGR00573 TIGR00573 217 2e-15 49.8 0.0 1 1 2.7e-17 3.4e-15 49.0 0.0 12 181 107 274 103 281 0.80 # 2526 # 3374 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_38 - 228 Methyltransf_26 PF13659.1 117 2.2e-11 37.1 0.0 1 2 4.2e-07 5.2e-05 16.5 0.0 57 114 7 71 2 74 0.72 # 27498 # 28181 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 228 Methyltransf_26 PF13659.1 117 2.2e-11 37.1 0.0 2 2 9.7e-08 1.2e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 27498 # 28181 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_106 - 518 AAA_30 PF13604.1 196 0.00039 13.2 0.0 1 1 5.8e-06 0.00071 12.4 0.0 4 44 211 251 209 276 0.84 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_54 - 216 HTH_Tnp_1 PF01527.15 76 1.5e-22 72.6 0.0 1 1 7.1e-24 4.4e-22 71.1 0.0 2 69 91 162 90 169 0.87 # 39876 # 40523 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_110 - 140 HTH_Tnp_1 PF01527.15 76 6.5e-19 60.9 0.2 1 1 1.7e-20 1.1e-18 60.3 0.1 2 49 9 59 8 99 0.81 # 94541 # 94960 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 1_122 - 96 GerE PF00196.14 58 1.7e-06 20.5 0.0 1 1 3.8e-08 2.3e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 102808 # 103095 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_72 - 341 GerE PF00196.14 58 2.3e-06 20.1 0.0 1 1 7.1e-08 4.4e-06 19.2 0.0 17 39 16 38 8 40 0.89 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_66 - 764 TraG-D_C PF12696.2 128 6.7e-07 22.4 0.1 1 1 1.2e-08 1.5e-06 21.3 0.1 1 88 437 524 437 553 0.83 # 49167 # 51458 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_71 - 260 Bac_DnaA PF00308.13 219 1.3e-09 31.2 0.0 1 1 1.6e-11 1.9e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_29 - 215 MipZ PF09140.6 261 2.9e-08 26.2 2.3 1 2 0.0008 0.099 4.8 0.5 7 25 8 26 2 38 0.71 # 20993 # 21637 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_29 - 215 MipZ PF09140.6 261 2.9e-08 26.2 2.3 2 2 9e-09 1.1e-06 21.1 0.1 70 133 45 108 25 125 0.84 # 20993 # 21637 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_38 - 228 UPF0020 PF01170.13 180 2.1e-05 17.3 0.0 1 2 0.00039 0.049 6.4 0.0 104 123 18 37 5 89 0.71 # 27498 # 28181 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 228 UPF0020 PF01170.13 180 2.1e-05 17.3 0.0 2 2 6.2e-05 0.0076 9.0 0.0 28 54 163 189 158 221 0.67 # 27498 # 28181 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_11 - 421 DDE_Tnp_1 PF01609.16 213 9.8e-35 113.2 0.2 1 1 1.7e-36 2.1e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 7280 # 8542 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_116 - 197 Trp_repressor PF01371.14 88 0.00049 13.2 0.0 1 1 6.1e-06 0.00075 12.6 0.0 1 40 102 141 102 145 0.95 # 98659 # 99249 # -1 # ID=1_116;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 1_72 - 341 Sigma70_r4 PF04545.11 50 0.00051 12.6 0.2 1 1 2e-05 0.0025 10.4 0.1 19 39 16 36 9 39 0.88 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_72 - 341 DUF2316 PF10078.4 89 0.00086 12.5 0.0 1 1 1.5e-05 0.0019 11.4 0.0 20 80 14 83 5 90 0.81 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_71 - 260 AAA PF00004.24 132 2.3e-07 24.3 0.0 1 1 6.3e-09 3.9e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_106 - 518 AAA PF00004.24 132 0.00031 14.2 0.1 1 2 0.00065 0.04 7.3 0.0 1 21 228 248 228 278 0.83 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_106 - 518 AAA PF00004.24 132 0.00031 14.2 0.1 2 2 0.034 2.1 1.8 0.0 9 66 442 508 436 515 0.64 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_43 - 141 Rrf2 PF02082.15 83 0.00065 13.0 0.0 1 2 0.0023 0.28 4.6 0.0 28 51 33 56 28 57 0.90 # 30560 # 30982 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.565 1_43 - 141 Rrf2 PF02082.15 83 0.00065 13.0 0.0 2 2 0.00072 0.089 6.2 0.0 26 65 75 118 65 131 0.76 # 30560 # 30982 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.565 1_38 - 228 N6_N4_Mtase PF01555.13 231 9.4e-37 119.9 0.0 1 1 3.4e-36 4.1e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 27498 # 28181 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_31 - 327 Hydantoinase_A PF01968.13 290 8.7e-09 28.0 0.2 1 2 1.7e-06 0.00021 13.6 0.1 66 98 154 185 141 192 0.79 # 22446 # 23426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_31 - 327 Hydantoinase_A PF01968.13 290 8.7e-09 28.0 0.2 2 2 5.5e-06 0.00068 11.9 0.0 211 263 244 296 201 301 0.86 # 22446 # 23426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_71 - 260 AAA_16 PF13191.1 185 7.4e-05 16.0 1.0 1 1 9e-06 0.00037 13.7 0.1 16 41 97 119 84 146 0.78 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_106 - 518 AAA_16 PF13191.1 185 0.00011 15.4 0.0 1 1 9.6e-06 0.00039 13.6 0.0 8 51 213 252 212 301 0.78 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_93 - 383 AAA_16 PF13191.1 185 0.00036 13.7 0.0 1 1 1.8e-05 0.00075 12.7 0.0 27 52 160 188 148 282 0.82 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_71 - 260 AAA_22 PF13401.1 131 1.8e-06 21.3 0.2 1 2 6.7e-05 0.0027 11.0 0.0 5 21 103 119 99 131 0.83 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 AAA_22 PF13401.1 131 1.8e-06 21.3 0.2 2 2 0.0011 0.045 7.1 0.0 88 103 154 181 126 203 0.66 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_93 - 383 AAA_22 PF13401.1 131 1.2e-05 18.6 0.0 1 1 7.4e-07 3e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_106 - 518 AAA_22 PF13401.1 131 0.00033 14.0 0.0 1 1 1.9e-05 0.00078 12.8 0.0 6 28 227 249 222 330 0.77 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_71 - 260 TIGR00362 TIGR00362 437 7.4e-11 34.5 0.0 1 1 7.1e-13 8.8e-11 34.3 0.0 139 240 104 203 28 210 0.86 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_62 - 283 Methyltransf_27 PF13708.1 194 2.8e-66 215.9 0.0 1 1 3.1e-68 3.8e-66 215.5 0.0 2 194 85 278 84 278 0.96 # 44585 # 45433 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_72 - 341 NUMOD1 PF07453.8 37 0.00031 13.8 0.1 1 1 4.9e-06 0.0006 12.9 0.1 20 37 21 38 19 38 0.91 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_106 - 518 AAA_29 PF13555.1 62 3.4e-05 16.5 0.0 1 1 1.7e-06 7e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_93 - 383 AAA_29 PF13555.1 62 4.7e-05 16.1 0.0 1 1 3.4e-06 0.00014 14.6 0.0 26 44 160 178 151 186 0.83 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_71 - 260 AAA_29 PF13555.1 62 0.00091 12.0 0.0 1 1 4.3e-05 0.0018 11.1 0.0 19 59 98 139 89 141 0.72 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_54 - 216 LZ_Tnp_IS481 PF13011.1 85 5.9e-05 16.6 0.0 1 2 0.0052 0.64 3.7 0.0 27 55 20 48 11 52 0.84 # 39876 # 40523 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_54 - 216 LZ_Tnp_IS481 PF13011.1 85 5.9e-05 16.6 0.0 2 2 3.4e-05 0.0041 10.7 0.0 15 54 102 141 98 166 0.87 # 39876 # 40523 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_71 - 260 AAA_28 PF13521.1 163 0.0013 11.9 1.6 1 2 0.061 7.4 -0.3 0.1 84 110 35 63 4 82 0.66 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 AAA_28 PF13521.1 163 0.0013 11.9 1.6 2 2 3e-05 0.0037 10.4 0.2 1 43 104 151 104 172 0.70 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_31 - 327 TIGR02350 TIGR02350 596 0.00011 13.5 0.6 1 3 0.083 10 -2.9 0.0 362 381 80 99 67 130 0.59 # 22446 # 23426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_31 - 327 TIGR02350 TIGR02350 596 0.00011 13.5 0.6 2 3 0.00011 0.013 6.7 0.0 175 200 159 181 142 198 0.82 # 22446 # 23426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_31 - 327 TIGR02350 TIGR02350 596 0.00011 13.5 0.6 3 3 0.00048 0.059 4.5 0.0 271 348 220 295 205 308 0.85 # 22446 # 23426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_4 - 283 RNase_H_2 PF13482.1 164 0.00014 14.9 0.0 1 1 7.8e-06 0.00096 12.2 0.0 1 79 105 199 105 255 0.57 # 2526 # 3374 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_72 - 341 HTH_3 PF01381.17 55 1.1e-06 21.6 0.1 1 1 3.5e-08 2.2e-06 20.7 0.1 7 37 15 45 8 48 0.91 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_61 - 84 HTH_3 PF01381.17 55 4.8e-05 16.4 0.0 1 1 2e-06 0.00013 15.1 0.0 1 34 6 39 6 45 0.90 # 43753 # 44004 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_11 - 421 DDE_Tnp_1_4 PF13701.1 449 4e-27 87.6 3.5 1 2 0.0052 0.63 1.2 0.0 11 42 5 36 3 62 0.72 # 7280 # 8542 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_11 - 421 DDE_Tnp_1_4 PF13701.1 449 4e-27 87.6 3.5 2 2 1.5e-28 1.8e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 7280 # 8542 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_54 - 216 HTH_23 PF13384.1 50 7.7e-11 34.6 0.0 1 2 5.9e-05 0.0012 11.7 0.0 10 46 10 47 7 48 0.85 # 39876 # 40523 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_54 - 216 HTH_23 PF13384.1 50 7.7e-11 34.6 0.0 2 2 9e-08 1.8e-06 20.7 0.0 10 46 104 141 99 145 0.83 # 39876 # 40523 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_110 - 140 HTH_23 PF13384.1 50 3.8e-09 29.2 0.0 1 1 3e-10 6e-09 28.6 0.0 6 45 18 58 13 64 0.89 # 94541 # 94960 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 1_72 - 341 HTH_23 PF13384.1 50 1e-08 27.9 0.0 1 1 1.5e-09 3.1e-08 26.3 0.0 9 40 9 40 2 43 0.89 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_47 - 653 HTH_23 PF13384.1 50 5.4e-06 19.2 0.0 1 1 4.4e-06 9.1e-05 15.3 0.0 13 40 149 176 143 180 0.91 # 32817 # 34775 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.594 1_122 - 96 HTH_23 PF13384.1 50 4.5e-05 16.3 0.0 1 1 3e-06 6.2e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 102808 # 103095 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_61 - 84 HTH_23 PF13384.1 50 7.8e-05 15.5 0.2 1 1 2.1e-05 0.00043 13.2 0.1 17 33 14 30 6 38 0.86 # 43753 # 44004 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_17 - 116 zf-DHHC PF01529.15 174 0.0021 10.7 4.5 1 1 1.2e-05 0.0014 11.2 3.1 88 151 32 108 30 113 0.77 # 13651 # 13998 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_72 - 341 HTH_7 PF02796.10 45 3.2e-11 36.2 0.3 1 1 6.8e-13 8.3e-11 34.9 0.3 13 44 9 40 5 41 0.93 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_72 - 341 HTH_19 PF12844.2 64 1.9e-05 17.9 0.0 1 1 5.4e-07 3.3e-05 17.1 0.0 7 52 12 58 11 70 0.82 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_61 - 84 HTH_19 PF12844.2 64 0.00011 15.5 0.0 1 1 2.3e-06 0.00014 15.1 0.0 7 53 9 56 5 67 0.87 # 43753 # 44004 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_61 - 84 DUF1870 PF08965.5 118 0.00031 13.6 1.0 1 1 3e-06 0.00037 13.4 1.0 1 75 1 78 1 82 0.69 # 43753 # 44004 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_72 - 341 HTH_29 PF13551.1 112 3.1e-06 20.5 0.0 1 1 3.2e-07 9.7e-06 18.9 0.0 6 35 12 40 8 103 0.73 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_110 - 140 HTH_29 PF13551.1 112 7.3e-05 16.1 0.0 1 1 4.9e-06 0.00015 15.1 0.0 7 40 25 58 19 100 0.83 # 94541 # 94960 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 1_54 - 216 HTH_29 PF13551.1 112 8.7e-05 15.9 0.0 1 2 0.028 0.86 3.0 0.0 4 42 10 48 8 59 0.85 # 39876 # 40523 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_54 - 216 HTH_29 PF13551.1 112 8.7e-05 15.9 0.0 2 2 0.00015 0.0047 10.3 0.0 15 41 115 141 101 171 0.84 # 39876 # 40523 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_122 - 96 HTH_29 PF13551.1 112 0.00018 14.9 0.0 1 1 8.6e-06 0.00026 14.3 0.0 8 36 33 60 27 76 0.79 # 102808 # 103095 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_50 - 392 OrfB_Zn_ribbon PF07282.6 69 9.4e-29 92.2 0.3 1 1 1.8e-30 2.2e-28 91.0 0.3 1 69 293 363 293 363 0.98 # 36110 # 37285 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_4 - 283 DNA_pol_A_exo1 PF01612.15 176 1.6e-05 17.7 0.0 1 1 2.7e-07 3.4e-05 16.6 0.0 20 95 102 196 87 266 0.84 # 2526 # 3374 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_106 - 518 G-alpha PF00503.15 389 0.00077 11.3 0.0 1 2 0.054 6.7 -1.6 0.0 234 272 70 113 29 117 0.79 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_106 - 518 G-alpha PF00503.15 389 0.00077 11.3 0.0 2 2 1.9e-05 0.0023 9.8 0.0 58 87 225 254 214 325 0.84 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_60 - 77 UBA PF00627.26 37 0.0003 13.9 0.3 1 2 0.029 3.6 0.9 0.0 6 16 4 14 1 15 0.84 # 43492 # 43722 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.481 1_60 - 77 UBA PF00627.26 37 0.0003 13.9 0.3 2 2 2e-05 0.0025 10.9 0.0 5 22 43 60 40 60 0.87 # 43492 # 43722 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.481 1_52 - 524 DDE_Tnp_IS66 PF03050.9 271 1.1e-104 342.6 0.3 1 2 0.017 1.1 1.6 2.4 159 205 35 84 14 125 0.53 # 37938 # 39509 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 1_52 - 524 DDE_Tnp_IS66 PF03050.9 271 1.1e-104 342.6 0.3 2 2 1.8e-106 1.1e-104 342.6 0.3 1 270 186 472 186 473 0.99 # 37938 # 39509 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 1_112 - 538 DDE_Tnp_IS66 PF03050.9 271 2.7e-98 321.7 0.0 1 1 4.3e-100 2.7e-98 321.7 0.0 1 271 196 487 196 487 0.98 # 95338 # 96951 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.555 1_88 - 231 OB_NTP_bind PF07717.11 114 0.00067 12.7 0.0 1 1 7.8e-06 0.00096 12.2 0.0 24 83 28 97 16 158 0.79 # 71783 # 72475 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_96 - 194 DNA_pol3_delta PF06144.8 172 2.4e-06 20.3 0.0 1 1 3e-08 3.6e-06 19.8 0.0 35 99 91 151 73 178 0.80 # 80360 # 80941 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_71 - 260 Arch_ATPase PF01637.13 234 0.0011 11.8 0.1 1 2 3.4e-05 0.0042 9.9 0.0 8 37 90 119 87 140 0.79 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 Arch_ATPase PF01637.13 234 0.0011 11.8 0.1 2 2 0.071 8.7 -0.9 0.0 121 150 167 192 144 203 0.68 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 PhoH PF02562.11 205 1e-07 24.5 0.2 1 2 0.064 7.9 -1.2 0.0 62 108 19 64 2 76 0.61 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 PhoH PF02562.11 205 1e-07 24.5 0.2 2 2 3.6e-09 4.4e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 AAA_5 PF07728.9 139 3.7e-05 16.7 0.3 1 2 3.6e-06 0.00045 13.2 0.2 1 74 104 173 104 180 0.72 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 AAA_5 PF07728.9 139 3.7e-05 16.7 0.3 2 2 0.053 6.5 -0.3 0.0 90 123 225 258 218 259 0.63 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 ResIII PF04851.10 184 0.00046 13.2 0.0 1 2 6.9e-05 0.0085 9.1 0.0 8 50 89 127 50 135 0.78 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 ResIII PF04851.10 184 0.00046 13.2 0.0 2 2 0.0077 0.94 2.4 0.0 112 163 131 181 125 203 0.72 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 764 TrwB_AAD_bind PF10412.4 386 2.8e-06 19.3 0.2 1 2 9.3e-05 0.011 7.4 0.0 11 32 132 153 126 157 0.84 # 49167 # 51458 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_66 - 764 TrwB_AAD_bind PF10412.4 386 2.8e-06 19.3 0.2 2 2 3.1e-05 0.0039 9.0 0.1 247 332 440 525 427 542 0.88 # 49167 # 51458 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_29 - 215 TIGR01968 TIGR01968 261 9.5e-05 14.7 2.1 1 2 8.1e-06 0.0005 12.3 0.8 3 50 3 44 1 49 0.80 # 20993 # 21637 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_29 - 215 TIGR01968 TIGR01968 261 9.5e-05 14.7 2.1 2 2 0.017 1 1.5 0.0 101 140 63 102 49 123 0.75 # 20993 # 21637 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_31 - 327 TIGR01968 TIGR01968 261 0.00054 12.2 1.5 1 1 3.5e-05 0.0022 10.2 1.4 46 128 63 155 60 215 0.74 # 22446 # 23426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_93 - 383 AAA_18 PF13238.1 129 1.9e-05 18.2 0.0 1 1 6e-07 3.7e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_106 - 518 AAA_18 PF13238.1 129 0.0004 13.9 0.0 1 1 2.1e-05 0.0013 12.2 0.0 1 18 228 245 228 316 0.86 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_33 - 425 IMS_HHH PF11798.3 32 3.8e-08 26.3 0.2 1 1 9.1e-10 1.1e-07 24.9 0.2 3 32 172 201 170 201 0.93 # 23837 # 25111 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_71 - 260 DUF258 PF03193.11 161 1.6e-05 17.4 0.0 1 1 2e-07 2.4e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_4 - 283 TIGR01406 TIGR01406 231 3.8e-17 55.5 0.0 1 1 5.2e-19 6.4e-17 54.8 0.0 4 170 106 268 104 280 0.78 # 2526 # 3374 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_85 - 235 DUF3810 PF12725.2 318 0.0011 11.1 0.8 1 1 1.4e-05 0.0017 10.4 0.8 90 174 106 189 95 194 0.86 # 68793 # 69497 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.504 1_93 - 383 DUF87 PF01935.12 229 0.00075 12.5 0.0 1 1 1.1e-05 0.0014 11.7 0.0 28 56 162 191 161 192 0.88 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_54 - 216 HTH_28 PF13518.1 52 5.6e-09 29.1 0.0 1 2 0.0023 0.069 6.5 0.0 5 41 10 47 8 52 0.83 # 39876 # 40523 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_54 - 216 HTH_28 PF13518.1 52 5.6e-09 29.1 0.0 2 2 1.1e-07 3.3e-06 20.3 0.0 3 41 102 141 100 145 0.82 # 39876 # 40523 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_72 - 341 HTH_28 PF13518.1 52 5.9e-08 25.9 0.1 1 1 4.9e-09 1.5e-07 24.6 0.1 7 34 12 39 8 40 0.89 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_110 - 140 HTH_28 PF13518.1 52 9e-06 18.9 0.1 1 1 5.1e-07 1.6e-05 18.1 0.1 1 41 18 59 18 63 0.92 # 94541 # 94960 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 1_122 - 96 HTH_28 PF13518.1 52 0.00018 14.7 0.0 1 1 1.7e-05 0.00053 13.2 0.0 9 38 33 62 26 75 0.86 # 102808 # 103095 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_72 - 341 HTH_24 PF13412.1 48 5.4e-07 22.2 0.1 1 1 7.8e-09 9.6e-07 21.4 0.1 10 40 11 40 10 43 0.89 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_72 - 341 HTH_30 PF13556.1 59 0.00011 15.0 0.0 1 1 1.9e-06 0.00024 13.9 0.0 10 34 15 39 10 43 0.86 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_4 - 283 TIGR01298 TIGR01298 200 7.3e-07 22.0 1.0 1 1 5.7e-08 7e-06 18.8 1.0 93 189 167 267 97 275 0.80 # 2526 # 3374 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_72 - 341 HTH_10 PF04967.7 53 0.00028 13.7 0.0 1 1 4.4e-06 0.00054 12.8 0.0 24 45 18 39 15 43 0.89 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_61 - 84 HTH_31 PF13560.1 64 7.2e-07 22.6 1.7 1 1 1.9e-08 1.2e-06 21.9 1.1 3 43 3 43 2 58 0.86 # 43753 # 44004 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_72 - 341 HTH_31 PF13560.1 64 3.4e-05 17.2 0.0 1 1 1.4e-06 8.4e-05 16.0 0.0 12 54 15 60 13 61 0.85 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_50 - 392 HTH_OrfB_IS605 PF12323.3 46 5.2e-21 67.0 0.2 1 1 1e-22 1.2e-20 65.8 0.2 1 45 1 45 1 46 0.98 # 36110 # 37285 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_106 - 518 T2SE PF00437.15 272 2.9e-41 134.3 0.1 1 1 9.6e-43 5.9e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_93 - 383 T2SE PF00437.15 272 9.9e-36 116.2 0.0 1 1 2.4e-37 1.5e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_31 - 327 StbA PF06406.6 318 1.5e-156 513.3 1.2 1 1 1.4e-158 1.7e-156 513.2 1.2 1 318 1 319 1 319 1.00 # 22446 # 23426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_93 - 383 AAA_17 PF13207.1 121 2.3e-05 18.4 0.1 1 2 4.7e-06 0.00029 14.9 0.0 3 47 161 208 161 251 0.76 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_93 - 383 AAA_17 PF13207.1 121 2.3e-05 18.4 0.1 2 2 0.086 5.3 1.1 0.1 24 113 332 363 274 374 0.60 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_106 - 518 AAA_17 PF13207.1 121 2.7e-05 18.2 0.2 1 1 2.1e-06 0.00013 16.0 0.0 1 24 227 255 227 345 0.72 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_3 - 94 TIGR02211 TIGR02211 221 0.00014 14.3 0.0 1 1 1.2e-06 0.00015 14.2 0.0 109 167 9 72 2 87 0.80 # 2205 # 2486 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_71 - 260 AAA_25 PF13481.1 194 3.1e-05 16.6 0.0 1 1 1.2e-06 5.1e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_93 - 383 AAA_25 PF13481.1 194 0.00024 13.7 0.0 1 1 1.1e-05 0.00043 12.9 0.0 24 58 148 182 124 207 0.78 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_106 - 518 AAA_25 PF13481.1 194 0.00034 13.2 0.1 1 2 0.00013 0.0054 9.3 0.0 25 65 217 260 200 270 0.72 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_106 - 518 AAA_25 PF13481.1 194 0.00034 13.2 0.1 2 2 0.058 2.4 0.7 0.0 153 190 297 337 292 340 0.74 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_71 - 260 RuvB_N PF05496.7 234 0.00041 12.6 0.0 1 1 6.5e-06 0.00079 11.7 0.0 50 119 102 182 92 190 0.65 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 AAA_14 PF13173.1 128 1.4e-06 21.4 0.0 1 1 4.5e-08 2.8e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_106 - 518 AAA_14 PF13173.1 128 0.00096 12.3 0.0 1 1 7.4e-05 0.0045 10.1 0.0 5 30 228 254 225 286 0.80 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_29 - 215 VirC1 PF07015.6 231 0.0005 12.4 0.0 1 2 0.00073 0.09 5.0 0.0 3 29 3 29 1 36 0.81 # 20993 # 21637 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_29 - 215 VirC1 PF07015.6 231 0.0005 12.4 0.0 2 2 0.00052 0.064 5.5 0.0 87 190 77 181 59 194 0.70 # 20993 # 21637 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_72 - 341 HTH_Tnp_ISL3 PF13542.1 52 2.5e-05 16.6 0.1 1 1 1.5e-06 9.5e-05 14.8 0.0 21 49 11 39 2 40 0.82 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_122 - 96 HTH_Tnp_ISL3 PF13542.1 52 7.4e-05 15.1 0.0 1 1 1.9e-06 0.00012 14.5 0.0 29 50 38 59 34 60 0.89 # 102808 # 103095 # -1 # ID=1_122;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_72 - 341 CENP-B_N PF04218.8 53 8.6e-05 15.2 0.1 1 1 1.3e-06 0.00016 14.3 0.1 20 47 15 42 2 43 0.83 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_93 - 383 RNA_helicase PF00910.17 107 0.00012 15.5 0.0 1 1 1.9e-06 0.00023 14.5 0.0 2 28 161 187 160 205 0.83 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_71 - 260 NTPase_1 PF03266.10 168 0.00029 13.8 0.1 1 2 0.0016 0.2 4.5 0.1 2 30 105 133 104 153 0.83 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 NTPase_1 PF03266.10 168 0.00029 13.8 0.1 2 2 0.00025 0.03 7.2 0.0 88 112 157 181 144 204 0.72 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_72 - 341 GcrA PF07750.6 162 0.00014 15.3 0.0 1 1 2.5e-06 0.00031 14.2 0.0 6 36 5 34 2 46 0.92 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_93 - 383 ATP_bind_1 PF03029.12 238 5.7e-05 15.9 0.0 1 1 7.2e-07 8.8e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_72 - 341 HTH_26 PF13443.1 63 2.1e-06 21.1 0.0 1 1 3.4e-08 4.1e-06 20.2 0.0 4 41 11 48 10 58 0.90 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_106 - 518 DAP3 PF10236.4 309 0.00077 11.6 0.0 1 1 1.2e-05 0.0015 10.7 0.0 21 42 223 244 215 253 0.86 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_72 - 341 HTH_17 PF12728.2 51 0.0014 12.2 0.8 1 1 2.5e-05 0.0031 11.0 0.1 6 26 22 43 18 83 0.88 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_72 - 341 HTH_11 PF08279.7 55 1.8e-06 20.8 0.1 1 1 3.5e-08 4.4e-06 19.5 0.1 8 37 12 39 5 40 0.80 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_19 - 197 MarR_2 PF12802.2 62 0.00045 13.1 0.5 1 2 0.001 0.12 5.3 0.1 4 33 8 40 7 44 0.81 # 14482 # 15072 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_19 - 197 MarR_2 PF12802.2 62 0.00045 13.1 0.5 2 2 0.0012 0.15 5.0 0.0 41 57 54 70 48 73 0.84 # 14482 # 15072 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_72 - 341 TrmB PF01978.14 68 0.00031 13.7 0.0 1 1 5.6e-06 0.00069 12.5 0.0 16 44 11 39 10 40 0.93 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_4 - 283 RNase_T PF00929.19 164 4.1e-26 85.4 0.0 1 1 4.3e-28 5.3e-26 85.0 0.0 1 163 105 262 105 263 0.95 # 2526 # 3374 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_72 - 341 DUF1670 PF07900.6 220 0.0012 11.3 0.1 1 1 1.8e-05 0.0022 10.4 0.1 189 219 9 39 4 40 0.92 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_80 - 1015 AAA_10 PF12846.2 304 1.4e-30 99.9 0.0 1 1 1.3e-31 3.2e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 63641 # 66685 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_71 - 260 AAA_10 PF12846.2 304 9.2e-06 18.4 0.6 1 1 4.8e-06 0.00012 14.8 0.1 1 33 102 134 102 171 0.89 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 764 AAA_10 PF12846.2 304 3.1e-05 16.7 1.0 1 1 3.9e-06 9.6e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 49167 # 51458 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_106 - 518 AAA_10 PF12846.2 304 0.00028 13.6 0.0 1 1 2.1e-05 0.00051 12.7 0.0 4 30 228 256 226 320 0.81 # 89600 # 91153 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_93 - 383 AAA_10 PF12846.2 304 0.00063 12.4 0.0 1 1 5e-05 0.0012 11.4 0.0 2 21 158 177 157 196 0.83 # 77547 # 78695 # -1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_72 - 341 HTH_20 PF12840.2 61 0.00047 13.2 0.0 1 1 8.2e-06 0.001 12.1 0.0 19 46 13 39 10 40 0.89 # 55655 # 56677 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_60 - 77 Yae1_N PF09811.4 39 1.4e-08 27.4 10.4 1 1 2.9e-10 3.6e-08 26.1 10.4 5 30 11 36 8 40 0.63 # 43492 # 43722 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.481 1_71 - 260 IstB_IS21 PF01695.12 178 5.6e-73 237.3 0.1 1 2 0.049 6 -0.6 0.0 64 97 25 57 24 61 0.64 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_71 - 260 IstB_IS21 PF01695.12 178 5.6e-73 237.3 0.1 2 2 9.8e-75 1.2e-72 236.2 0.1 1 178 56 235 56 235 0.98 # 54876 # 55655 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_45 - 176 SSB PF00436.20 104 7.4e-41 131.5 0.3 1 1 7.9e-43 9.7e-41 131.1 0.3 1 101 6 109 6 112 0.96 # 31940 # 32467 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_110 - 140 BrkDBD PF09607.5 58 8.1e-05 15.4 0.4 1 1 1.3e-06 0.00016 14.4 0.1 3 48 11 53 9 58 0.91 # 94541 # 94960 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.488 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/65ee69ac-b867-4304-a02a-94b40dae22d2 # Target file: checkm_output/bins/pm63/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm63/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/65ee69ac-b867-4304-a02a-94b40dae22d2 checkm_output/bins/pm63/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:11:01 2017 # [ok]