# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 134 HTH_IclR PF09339.5 52 2.6e-06 16.2 0.4 1 1 6.9e-07 4.8e-06 15.4 0.4 19 40 4 25 1 26 0.90 # 4303 # 4704 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_3 - 465 FtsK_SpoIIIE PF01580.13 205 2e-05 13.3 0.0 1 1 5e-06 3.5e-05 12.5 0.0 18 58 54 97 45 109 0.81 # 1274 # 2668 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 465 SMC_N PF02463.14 220 2.1e-06 16.2 1.5 1 1 1.7e-06 1.2e-05 13.7 1.5 27 195 80 387 64 402 0.76 # 1274 # 2668 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 465 AAA_21 PF13304.1 303 1.1e-38 122.9 14.0 1 1 4.2e-39 3e-38 121.5 14.0 2 301 80 394 79 396 0.86 # 1274 # 2668 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_5 - 78 Ribosomal_L37ae PF01780.14 90 1.5e-05 14.0 0.6 1 1 3.1e-06 2.1e-05 13.6 0.6 36 66 35 66 30 76 0.84 # 3285 # 3518 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444 1_6 - 134 MerR_1 PF13411.1 69 3.2e-05 12.9 0.1 1 1 1.7e-05 0.00012 11.1 0.0 2 30 5 33 4 42 0.86 # 4303 # 4704 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_6 - 134 HTH_23 PF13384.1 50 7.9e-06 14.7 0.1 1 1 2.6e-06 1.8e-05 13.6 0.1 18 40 4 26 1 26 0.91 # 4303 # 4704 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_6 - 134 HTH_28 PF13518.1 52 2.4e-05 13.5 0.1 1 1 1.1e-05 8e-05 11.9 0.1 13 35 4 26 2 28 0.92 # 4303 # 4704 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_6 - 134 HTH_24 PF13412.1 48 4.6e-05 12.0 0.3 1 1 1.3e-05 8.9e-05 11.1 0.3 16 39 2 25 2 26 0.94 # 4303 # 4704 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_6 - 134 MerR PF00376.18 38 1.4e-05 13.8 0.0 1 1 4.9e-06 3.4e-05 12.6 0.0 1 23 5 27 5 34 0.92 # 4303 # 4704 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_6 - 134 HTH_17 PF12728.2 51 6.3e-09 25.3 0.0 1 1 1.6e-09 1.1e-08 24.5 0.0 3 44 5 47 4 50 0.79 # 4303 # 4704 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/0ad9d658-a140-43fc-8ed0-02ddd1fbc5c6 # Target file: checkm_output/bins/pm628/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm628/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0ad9d658-a140-43fc-8ed0-02ddd1fbc5c6 checkm_output/bins/pm628/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:10:44 2017 # [ok]