# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 228 Cons_hypoth95 PF03602.10 183 1.7e-06 17.6 0.0 1 2 0.0004 0.0052 6.2 0.0 112 146 18 54 9 82 0.65 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_3 - 228 Cons_hypoth95 PF03602.10 183 1.7e-06 17.6 0.0 2 2 4e-05 0.00052 9.4 0.0 41 62 162 183 145 218 0.78 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_12 - 104 HTH_IclR PF09339.5 52 5.4e-07 19.3 0.4 1 2 0.048 0.63 -0.2 0.1 7 18 27 38 25 56 0.70 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_IclR PF09339.5 52 5.4e-07 19.3 0.4 2 2 1.8e-07 2.3e-06 17.3 0.0 15 40 73 98 69 99 0.86 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_22 PF13309.1 64 2e-05 14.4 0.6 1 1 4.5e-06 5.8e-05 12.9 0.2 32 63 71 97 61 98 0.76 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_3 - 228 TIGR00095 TIGR00095 194 3.7e-05 13.1 0.0 1 2 0.0014 0.019 4.3 0.0 123 138 19 34 8 79 0.73 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_3 - 228 TIGR00095 TIGR00095 194 3.7e-05 13.1 0.0 2 2 0.00024 0.0032 6.8 0.0 53 86 164 199 155 218 0.77 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_7 - 424 HHH_5 PF14520.1 60 4.5e-05 13.7 0.0 1 1 9.2e-06 0.00012 12.3 0.0 9 37 184 212 175 229 0.93 # 3790 # 5061 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_12 - 104 HTH_40 PF14493.1 91 2.2e-05 14.7 0.6 1 2 0.042 0.55 0.6 0.0 49 74 31 57 21 68 0.69 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_40 PF14493.1 91 2.2e-05 14.7 0.6 2 2 7.6e-06 9.8e-05 12.7 0.1 7 33 70 96 64 101 0.89 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_38 PF13936.1 44 1.2e-07 21.4 1.4 1 2 0.055 0.71 -0.4 0.4 7 20 34 47 33 49 0.80 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_38 PF13936.1 44 1.2e-07 21.4 1.4 2 2 2.1e-08 2.7e-07 20.2 0.0 9 41 65 97 63 100 0.93 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_8 - 209 MobB PF03205.9 140 7.4e-06 15.8 0.1 1 1 1.6e-06 2.1e-05 14.3 0.0 10 42 11 41 1 46 0.79 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 AAA_19 PF13245.1 76 3.8e-05 13.5 0.1 1 2 9.6e-05 0.0013 8.6 0.0 20 48 11 35 9 44 0.84 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 AAA_19 PF13245.1 76 3.8e-05 13.5 0.1 2 2 0.011 0.14 2.1 0.0 42 63 135 158 118 184 0.76 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 CbiA PF01656.18 195 2.3e-23 72.6 0.0 1 1 3.1e-24 4e-23 71.8 0.0 1 158 3 141 3 179 0.75 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_3 - 228 MethyltransfD12 PF02086.10 260 6.1e-05 12.5 0.0 1 2 0.018 0.24 0.8 0.0 175 188 18 31 8 70 0.83 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_3 - 228 MethyltransfD12 PF02086.10 260 6.1e-05 12.5 0.0 2 2 4e-05 0.00052 9.5 0.0 20 46 163 189 148 197 0.78 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_8 - 209 YhjQ PF06564.7 244 3e-06 16.7 0.3 1 2 1.8e-06 2.3e-05 13.8 0.3 4 38 3 37 1 50 0.89 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 YhjQ PF06564.7 244 3e-06 16.7 0.3 2 2 0.029 0.38 0.0 0.0 108 144 69 103 44 113 0.78 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_3 - 228 Methyltransf_26 PF13659.1 117 1.1e-12 38.1 0.1 1 2 2.1e-07 2.7e-06 17.5 0.0 57 114 7 71 2 74 0.69 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_3 - 228 Methyltransf_26 PF13659.1 117 1.1e-12 38.1 0.1 2 2 9.7e-08 1.3e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_12 - 104 GerE PF00196.14 58 4.7e-05 12.8 0.1 1 1 6.8e-06 8.9e-05 11.9 0.1 11 35 69 93 67 96 0.93 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_8 - 209 MipZ PF09140.6 261 2.4e-22 69.2 0.5 1 2 1.2e-12 1.5e-11 33.8 0.0 2 53 2 52 1 60 0.89 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 MipZ PF09140.6 261 2.4e-22 69.2 0.5 2 2 1.6e-12 2.1e-11 33.4 0.0 87 140 65 118 58 128 0.92 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_3 - 228 UPF0020 PF01170.13 180 2e-06 17.5 0.0 1 2 0.00034 0.0044 6.6 0.0 103 118 17 32 4 82 0.75 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_3 - 228 UPF0020 PF01170.13 180 2e-06 17.5 0.0 2 2 6.2e-05 0.0008 9.0 0.0 28 54 163 189 158 221 0.67 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_8 - 209 TIGR00064 TIGR00064 279 3e-05 13.0 0.5 1 2 0.00073 0.0095 4.8 0.1 89 116 11 38 1 45 0.88 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 TIGR00064 TIGR00064 279 3e-05 13.0 0.5 2 2 0.00024 0.0032 6.4 0.0 153 175 68 90 60 99 0.82 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_3 - 228 N6_N4_Mtase PF01555.13 231 1.6e-37 119.1 0.0 1 2 2.5e-15 3.2e-14 42.9 0.0 1 113 21 123 21 133 0.89 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_3 - 228 N6_N4_Mtase PF01555.13 231 1.6e-37 119.1 0.0 2 2 5.9e-25 7.6e-24 74.4 0.0 169 228 141 200 128 203 0.91 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_12 - 104 HTH_Tnp_IS630 PF01710.11 120 5e-06 16.3 0.0 1 1 6.3e-07 8.2e-06 15.6 0.0 8 44 66 102 61 103 0.91 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_8 - 209 SRP54 PF00448.17 196 3.2e-08 23.2 0.1 1 1 1.5e-08 2e-07 20.7 0.1 4 98 2 91 1 134 0.80 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_12 - 104 HTH_23 PF13384.1 50 1.7e-07 20.9 2.6 1 3 0.014 0.19 1.7 0.0 33 46 2 15 1 17 0.84 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_23 PF13384.1 50 1.7e-07 20.9 2.6 2 3 0.083 1.1 -0.7 0.1 6 17 36 47 32 52 0.62 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_23 PF13384.1 50 1.7e-07 20.9 2.6 3 3 1.3e-07 1.7e-06 17.7 0.2 5 39 64 98 60 102 0.87 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_8 - 209 Fer4_NifH PF00142.13 273 9.6e-06 14.9 0.2 1 1 2.3e-06 3e-05 13.3 0.0 8 38 9 39 2 46 0.89 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_12 - 104 HTH_7 PF02796.10 45 9.9e-15 44.3 0.6 1 1 1.6e-15 2.1e-14 43.2 0.1 1 44 59 99 59 100 0.97 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_29 PF13551.1 112 3.3e-06 17.3 1.2 1 2 0.011 0.14 2.4 0.2 24 54 32 61 11 68 0.66 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_29 PF13551.1 112 3.3e-06 17.3 1.2 2 2 3.3e-06 4.2e-05 13.8 0.0 4 35 69 99 66 103 0.90 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_8 - 209 TIGR01968 TIGR01968 261 2.2e-12 36.5 0.8 1 2 6.4e-11 8.3e-10 28.1 0.5 3 39 2 38 1 42 0.97 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 TIGR01968 TIGR01968 261 2.2e-12 36.5 0.8 2 2 0.00018 0.0024 6.9 0.0 100 135 65 100 60 149 0.83 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_7 - 424 IMS_HHH PF11798.3 32 1.3e-09 27.8 0.2 1 1 3.1e-10 4e-09 26.3 0.2 6 32 175 201 170 201 0.92 # 3790 # 5061 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_3 - 228 Methyltransf_15 PF09445.5 164 0.0001 11.9 0.0 1 2 0.045 0.58 -0.3 0.0 53 79 4 29 2 32 0.90 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_3 - 228 Methyltransf_15 PF09445.5 164 0.0001 11.9 0.0 2 2 4.2e-05 0.00055 9.5 0.0 3 31 166 194 164 209 0.86 # 719 # 1402 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_12 - 104 HTH_28 PF13518.1 52 2.8e-06 17.4 0.0 1 2 0.094 1.2 -0.6 0.0 28 41 2 15 2 17 0.80 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_28 PF13518.1 52 2.8e-06 17.4 0.0 2 2 1.5e-06 2e-05 14.7 0.0 8 33 72 97 65 102 0.82 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_8 - 209 AAA_17 PF13207.1 121 2e-06 18.7 0.0 1 1 4.1e-07 5.3e-06 17.3 0.0 9 77 11 84 9 205 0.75 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 AAA_25 PF13481.1 194 1.5e-05 14.4 0.1 1 1 3.1e-06 4e-05 13.1 0.0 42 87 10 44 3 90 0.78 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 VirC1 PF07015.6 231 4.4e-10 29.0 0.0 1 1 7.1e-11 9.3e-10 27.9 0.0 3 172 2 164 1 206 0.74 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_12 - 104 CENP-B_N PF04218.8 53 4.6e-05 12.9 0.1 1 1 2.2e-05 0.00029 10.4 0.1 26 47 80 101 65 102 0.86 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_26 PF13443.1 63 7.9e-05 12.9 0.0 1 1 1e-05 0.00013 12.2 0.0 6 34 72 100 68 103 0.90 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_17 PF12728.2 51 9.1e-05 12.8 1.0 1 2 0.013 0.17 2.3 0.1 25 43 51 69 37 72 0.80 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 HTH_17 PF12728.2 51 9.1e-05 12.8 1.0 2 2 0.0001 0.0014 9.0 0.1 6 23 81 98 79 101 0.87 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_12 - 104 TrmB PF01978.14 68 3.2e-06 16.9 0.0 1 1 4.1e-07 5.4e-06 16.2 0.0 19 44 73 98 67 99 0.89 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_8 - 209 AAA_10 PF12846.2 304 2e-05 14.1 0.0 1 1 2.5e-06 3.3e-05 13.4 0.0 11 39 11 39 3 66 0.90 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_12 - 104 HTH_20 PF12840.2 61 2.3e-06 17.4 0.1 1 1 2e-06 2.5e-05 14.1 0.1 2 43 27 95 26 99 0.93 # 7503 # 7814 # -1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 1_8 - 209 ArsA_ATPase PF02374.10 305 5.7e-09 25.4 0.9 1 3 1.2e-09 1.5e-08 24.0 0.1 3 48 3 48 1 69 0.85 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 ArsA_ATPase PF02374.10 305 5.7e-09 25.4 0.9 2 3 0.053 0.7 -1.2 0.0 121 135 69 85 47 86 0.75 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 ArsA_ATPase PF02374.10 305 5.7e-09 25.4 0.9 3 3 0.075 0.98 -1.7 0.0 205 234 132 161 118 202 0.65 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 AAA_31 PF13614.1 157 5.6e-07 19.6 0.0 1 2 2.5e-07 3.3e-06 17.1 0.0 2 42 2 42 1 55 0.88 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 209 AAA_31 PF13614.1 157 5.6e-07 19.6 0.0 2 2 0.055 0.71 -0.2 0.0 109 127 68 86 62 113 0.68 # 5265 # 5891 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/4faa47a0-323a-4a44-a107-16afc65e4cb7 # Target file: checkm_output/bins/pm623/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm623/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4faa47a0-323a-4a44-a107-16afc65e4cb7 checkm_output/bins/pm623/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:10:38 2017 # [ok]