# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 518 ABC_tran PF00005.22 137 1.5e-05 15.8 0.0 1 1 2.2e-06 3.9e-05 14.5 0.0 12 40 226 255 216 298 0.81 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA_19 PF13245.1 76 1.7e-05 15.0 0.0 1 1 2.7e-06 4.8e-05 13.6 0.0 10 46 226 259 218 270 0.79 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA_23 PF13476.1 202 3.2e-05 14.8 0.1 1 1 5.5e-06 9.9e-05 13.2 0.0 20 38 226 244 209 249 0.86 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA_30 PF13604.1 196 3.2e-05 14.0 0.0 1 1 3.2e-06 5.8e-05 13.2 0.0 4 44 211 251 209 280 0.86 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_6 - 198 Trp_repressor PF01371.14 88 9.8e-05 12.8 0.0 1 1 8e-06 0.00014 12.3 0.0 1 40 103 142 103 151 0.94 # 4951 # 5544 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.369 1_12 - 518 AAA PF00004.24 132 9.9e-05 13.1 0.0 1 3 0.057 1 0.1 0.0 38 57 81 100 50 113 0.80 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA PF00004.24 132 9.9e-05 13.1 0.0 2 3 0.00033 0.0059 7.3 0.0 1 21 228 248 228 277 0.83 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA PF00004.24 132 9.9e-05 13.1 0.0 3 3 0.034 0.61 0.8 0.0 9 66 442 508 436 515 0.62 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA_16 PF13191.1 185 1.3e-05 15.7 0.0 1 1 2.3e-06 4.1e-05 14.1 0.0 8 52 213 254 212 330 0.81 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA_22 PF13401.1 131 5.2e-05 13.9 0.0 1 1 6.5e-06 0.00012 12.8 0.0 6 28 227 249 222 330 0.78 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA_29 PF13555.1 62 4.8e-06 16.6 0.0 1 1 5.4e-07 9.7e-06 15.6 0.0 21 40 224 242 216 254 0.83 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_16 - 219 zf-DHHC PF01529.15 174 0.019 4.8 6.7 1 2 0.00037 0.0067 6.3 4.0 85 163 4 82 1 93 0.82 # 14649 # 15305 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_16 - 219 zf-DHHC PF01529.15 174 0.019 4.8 6.7 2 2 0.083 1.5 -1.4 0.1 140 146 129 135 82 187 0.59 # 14649 # 15305 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_12 - 518 G-alpha PF00503.15 389 0.00012 11.2 0.0 1 2 0.069 1.2 -2.0 0.0 234 272 70 113 51 117 0.81 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 G-alpha PF00503.15 389 0.00012 11.2 0.0 2 2 1.9e-05 0.00035 9.7 0.0 58 87 225 254 214 312 0.83 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA_18 PF13238.1 129 6.2e-05 13.8 0.0 1 1 1.1e-05 0.0002 12.2 0.0 1 18 228 245 228 312 0.86 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 T2SE PF00437.15 272 1.9e-42 135.4 0.1 1 1 2.7e-43 4.8e-42 134.1 0.0 10 271 97 373 90 374 0.85 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA_17 PF13207.1 121 5.1e-06 17.8 0.1 1 1 1.1e-06 2e-05 15.9 0.0 1 23 227 249 227 342 0.74 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA_25 PF13481.1 194 5.3e-05 13.2 0.0 1 2 3.7e-05 0.00067 9.5 0.0 19 65 211 260 200 270 0.72 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA_25 PF13481.1 194 5.3e-05 13.2 0.0 2 2 0.023 0.42 0.4 0.0 153 190 297 337 292 340 0.73 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 DAP3 PF10236.4 309 0.00011 11.6 0.0 1 1 1.2e-05 0.00021 10.7 0.0 21 42 223 244 214 253 0.86 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_12 - 518 AAA_10 PF12846.2 304 4e-05 13.6 0.0 1 1 4.2e-06 7.6e-05 12.7 0.0 4 30 228 256 226 304 0.78 # 10811 # 12364 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/27ee0f70-30fa-4a6e-8d6b-9e22e145a17d # Target file: checkm_output/bins/pm622/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm622/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/27ee0f70-30fa-4a6e-8d6b-9e22e145a17d checkm_output/bins/pm622/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:10:35 2017 # [ok]