# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 228 Cons_hypoth95 PF03602.10 183 7.9e-06 17.4 0.0 1 2 0.0005 0.026 5.9 0.0 112 128 18 34 9 83 0.64 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 228 Cons_hypoth95 PF03602.10 183 7.9e-06 17.4 0.0 2 2 3.9e-05 0.0021 9.5 0.0 41 62 162 183 145 219 0.78 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 3_4 - 284 RepC PF06504.6 283 2.4e-159 520.6 0.0 1 1 5e-161 2.6e-159 520.5 0.0 2 282 2 282 1 283 0.99 # 2829 # 3680 # -1 # ID=3_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.661 1_21 - 228 TIGR00095 TIGR00095 194 0.00012 13.4 0.0 1 2 0.0012 0.063 4.6 0.0 123 139 19 35 8 82 0.67 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 228 TIGR00095 TIGR00095 194 0.00012 13.4 0.0 2 2 0.00024 0.013 6.8 0.0 53 86 164 199 155 218 0.77 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_7 - 149 rve_3 PF13683.1 67 2e-13 41.7 0.0 1 1 5.3e-15 2.8e-13 41.3 0.0 6 67 69 130 64 130 0.93 # 3904 # 4350 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.530 1_32 - 1757 AAA_19 PF13245.1 76 6.6e-08 24.3 1.6 1 1 4.5e-09 2.4e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_16 - 402 CbiA PF01656.18 195 9.2e-24 75.9 0.0 1 1 3e-25 1.6e-23 75.1 0.0 1 158 112 319 112 351 0.71 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_21 - 228 MethyltransfD12 PF02086.10 260 0.00027 12.4 0.0 1 2 0.025 1.3 0.3 0.0 175 188 18 31 8 43 0.82 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 228 MethyltransfD12 PF02086.10 260 0.00027 12.4 0.0 2 2 4e-05 0.0021 9.5 0.0 20 46 163 189 148 197 0.78 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_12 - 326 Rep_3 PF01051.16 222 8.4e-34 109.1 0.1 1 1 2.2e-35 1.1e-33 108.6 0.1 3 214 10 265 8 271 0.90 # 9347 # 10324 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.520 1_7 - 149 rve PF00665.21 120 8.8e-22 69.5 0.0 1 1 9.2e-23 2.4e-21 68.1 0.0 28 119 2 92 1 93 0.97 # 3904 # 4350 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.530 4_1 - 235 rve PF00665.21 120 1.7e-13 42.7 0.1 1 2 0.03 0.79 1.9 0.0 78 102 27 49 6 54 0.84 # 64 # 768 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_1 - 235 rve PF00665.21 120 1.7e-13 42.7 0.1 2 2 1.2e-13 3.2e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 64 # 768 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_28 - 216 Terminase_5 PF06056.7 58 0.00023 12.8 0.0 1 1 1.3e-05 0.00068 11.3 0.0 16 44 115 143 113 150 0.93 # 21862 # 22509 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_21 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 36.3 0.1 1 2 6.3e-07 3.3e-05 15.9 0.0 57 114 7 71 2 86 0.71 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 36.3 0.1 2 2 1e-07 5.4e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_32 - 1757 AAA_30 PF13604.1 196 5e-45 145.5 15.6 1 3 0.083 2.2 -0.2 0.0 41 86 223 269 219 281 0.81 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_32 - 1757 AAA_30 PF13604.1 196 5e-45 145.5 15.6 2 3 1.1e-05 0.00029 12.4 4.5 7 146 420 551 416 561 0.82 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_32 - 1757 AAA_30 PF13604.1 196 5e-45 145.5 15.6 3 3 7e-44 1.9e-42 137.1 1.6 1 186 968 1156 968 1162 0.94 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_31 - 763 AAA_30 PF13604.1 196 0.00033 12.3 0.0 1 1 2.7e-05 0.00072 11.2 0.0 21 57 188 224 180 230 0.85 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 122 CPSase_L_D3 PF02787.14 123 0.00035 12.4 0.2 1 2 0.0027 0.14 3.9 0.0 5 31 11 37 8 49 0.85 # 4440 # 4805 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_8 - 122 CPSase_L_D3 PF02787.14 123 0.00035 12.4 0.2 2 2 0.00042 0.022 6.5 0.0 43 80 77 112 74 117 0.89 # 4440 # 4805 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_28 - 216 HTH_Tnp_1 PF01527.15 76 6.5e-23 72.6 0.0 1 1 1.4e-23 1.9e-22 71.1 0.0 2 69 91 162 90 169 0.87 # 21862 # 22509 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_8 - 122 HTH_Tnp_1 PF01527.15 76 6.1e-21 66.3 1.0 1 1 6.2e-22 8.2e-21 65.9 0.5 2 74 8 87 7 89 0.88 # 4440 # 4805 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_4 - 109 HTH_Tnp_1 PF01527.15 76 1.7e-13 42.4 1.0 1 1 5.2e-14 6.9e-13 40.5 1.0 1 74 1 87 1 88 0.85 # 867 # 1193 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.544 4_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00013 13.9 0.3 1 1 2.2e-05 0.00029 12.9 0.3 4 51 6 58 4 63 0.79 # 64 # 768 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_31 - 763 TraG-D_C PF12696.2 128 4.3e-21 67.1 0.0 1 1 1.5e-22 7.8e-21 66.3 0.0 1 127 419 541 419 542 0.86 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 235 DDE_3 PF13358.1 146 0.00036 12.3 0.0 1 1 2.1e-05 0.0011 10.7 0.0 32 90 82 141 59 146 0.87 # 64 # 768 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_16 - 402 MipZ PF09140.6 261 2.4e-06 18.8 0.5 1 2 4.1e-05 0.0022 9.1 0.0 1 50 110 164 110 190 0.77 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_16 - 402 MipZ PF09140.6 261 2.4e-06 18.8 0.5 2 2 0.00012 0.0062 7.6 0.1 90 135 237 282 227 287 0.89 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_21 - 228 UPF0020 PF01170.13 180 1.1e-05 17.1 0.0 1 2 0.00044 0.024 6.2 0.0 103 117 17 31 4 81 0.82 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 228 UPF0020 PF01170.13 180 1.1e-05 17.1 0.0 2 2 6.3e-05 0.0033 9.0 0.0 28 54 163 189 158 220 0.67 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_25 - 397 DDE_Tnp_1 PF01609.16 213 1.1e-16 53.0 0.0 1 1 3.2e-18 1.7e-16 52.4 0.0 71 188 149 301 104 326 0.79 # 19246 # 20436 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_21 - 228 N6_N4_Mtase PF01555.13 231 1.4e-35 114.8 0.0 1 1 1.2e-34 6.3e-33 106.1 0.0 1 228 21 200 21 203 0.88 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_7 - 149 rve_2 PF13333.1 52 3.9e-09 28.6 0.0 1 1 1.3e-10 7e-09 27.7 0.0 1 44 83 129 83 136 0.88 # 3904 # 4350 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.530 1_31 - 763 AAA_16 PF13191.1 185 2.2e-06 19.7 0.0 1 1 2.1e-07 1.1e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_28 - 216 LZ_Tnp_IS481 PF13011.1 85 2.6e-05 16.6 0.0 1 2 0.0052 0.27 3.7 0.0 27 55 20 48 11 52 0.84 # 21862 # 22509 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 216 LZ_Tnp_IS481 PF13011.1 85 2.6e-05 16.6 0.0 2 2 3.5e-05 0.0019 10.6 0.0 15 54 102 141 99 166 0.87 # 21862 # 22509 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 4_1 - 235 HTH_32 PF13565.1 77 6.9e-07 22.1 0.2 1 1 5.6e-08 3e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 64 # 768 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_25 - 397 DDE_Tnp_1_4 PF13701.1 449 0.00046 10.4 0.8 1 1 0.00024 0.012 5.7 0.8 192 230 66 104 60 299 0.50 # 19246 # 20436 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.448 1_28 - 216 HTH_23 PF13384.1 50 3.3e-11 34.6 0.0 1 2 3.9e-05 0.00052 11.7 0.0 10 46 10 47 7 48 0.85 # 21862 # 22509 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 216 HTH_23 PF13384.1 50 3.3e-11 34.6 0.0 2 2 6e-08 8e-07 20.7 0.0 10 46 104 141 99 145 0.83 # 21862 # 22509 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_8 - 122 HTH_23 PF13384.1 50 1.3e-07 23.2 0.1 1 1 1.8e-08 2.4e-07 22.3 0.1 3 48 14 60 12 62 0.90 # 4440 # 4805 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 4_1 - 235 HTH_23 PF13384.1 50 3.2e-06 18.8 0.7 1 2 0.063 0.84 1.6 0.0 7 27 11 35 7 36 0.69 # 64 # 768 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_1 - 235 HTH_23 PF13384.1 50 3.2e-06 18.8 0.7 2 2 7.4e-06 9.9e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 64 # 768 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 109 HTH_23 PF13384.1 50 2.4e-05 16.0 1.1 1 1 1e-05 0.00014 13.6 0.3 5 42 10 55 8 66 0.84 # 867 # 1193 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.544 1_16 - 402 Fer4_NifH PF00142.13 273 6.3e-06 17.5 0.0 1 1 2.3e-07 1.2e-05 16.6 0.0 7 67 117 182 112 195 0.80 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_8 - 122 HTH_29 PF13551.1 112 2.2e-05 16.6 0.2 1 1 1.2e-06 3.2e-05 16.1 0.1 11 71 29 88 18 110 0.68 # 4440 # 4805 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_28 - 216 HTH_29 PF13551.1 112 3.9e-05 15.8 0.0 1 2 0.014 0.37 3.0 0.0 4 42 10 48 8 59 0.85 # 21862 # 22509 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 216 HTH_29 PF13551.1 112 3.9e-05 15.8 0.0 2 2 8.3e-05 0.0022 10.2 0.0 15 41 115 141 101 164 0.84 # 21862 # 22509 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_30 - 524 DDE_Tnp_IS66 PF03050.9 271 4.7e-105 342.6 0.3 1 2 0.017 0.46 1.6 2.4 159 205 35 84 14 125 0.53 # 22876 # 24447 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_30 - 524 DDE_Tnp_IS66 PF03050.9 271 4.7e-105 342.6 0.3 2 2 1.8e-106 4.7e-105 342.6 0.3 1 270 186 472 186 473 0.99 # 22876 # 24447 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 4_1 - 235 DDE_Tnp_IS66 PF03050.9 271 1.2e-12 39.5 0.3 1 1 6e-14 1.6e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 64 # 768 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_17 - 321 Sigma70_r3 PF04539.11 78 0.0001 14.2 0.1 1 1 6.3e-06 0.00033 12.6 0.1 11 46 151 186 144 188 0.85 # 13876 # 14838 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_31 - 763 TrwB_AAD_bind PF10412.4 386 1.5e-150 493.0 0.0 1 1 3.5e-152 1.9e-150 492.7 0.0 2 386 172 561 171 561 0.99 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_21 - 228 Methyltransf_15 PF09445.5 164 0.0004 12.0 0.0 1 2 0.042 2.2 -0.2 0.0 53 79 4 29 2 33 0.90 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 228 Methyltransf_15 PF09445.5 164 0.0004 12.0 0.0 2 2 4.3e-05 0.0023 9.5 0.0 3 31 166 194 164 208 0.86 # 16975 # 17658 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_28 - 216 HTH_28 PF13518.1 52 2.3e-09 29.2 0.0 1 2 0.0017 0.03 6.5 0.0 5 41 10 47 8 52 0.83 # 21862 # 22509 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 216 HTH_28 PF13518.1 52 2.3e-09 29.2 0.0 2 2 8.1e-08 1.4e-06 20.3 0.0 3 41 102 141 100 145 0.82 # 21862 # 22509 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_8 - 122 HTH_28 PF13518.1 52 1.1e-08 27.1 0.5 1 1 1.2e-09 2.1e-08 26.2 0.0 1 43 17 60 17 63 0.93 # 4440 # 4805 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 4_1 - 235 HTH_28 PF13518.1 52 3.1e-05 16.0 1.2 1 1 7.6e-06 0.00013 14.0 1.2 22 36 40 54 13 55 0.76 # 64 # 768 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_32 - 1757 UvrD_C_2 PF13538.1 104 7.8e-08 24.5 0.7 1 2 0.014 0.72 2.1 0.0 6 43 1227 1264 1223 1294 0.75 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_32 - 1757 UvrD_C_2 PF13538.1 104 7.8e-08 24.5 0.7 2 2 5.2e-08 2.8e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_31 - 763 AAA_17 PF13207.1 121 0.00018 14.3 0.0 1 1 1.2e-05 0.00066 12.5 0.0 3 27 189 217 187 262 0.68 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 3_5 - 153 AAA_25 PF13481.1 194 7.6e-13 40.3 0.0 1 1 2.3e-14 1.2e-12 39.6 0.0 141 193 5 57 2 58 0.93 # 3667 # 4125 # -1 # ID=3_5;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.669 1_32 - 1757 Viral_helicase1 PF01443.13 234 0.00017 13.1 0.1 1 2 0.00015 0.0081 7.6 0.0 1 111 988 1114 988 1212 0.52 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_32 - 1757 Viral_helicase1 PF01443.13 234 0.00017 13.1 0.1 2 2 0.0066 0.35 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_16 - 402 VirC1 PF07015.6 231 0.00032 11.8 0.0 1 2 0.015 0.79 0.7 0.0 4 26 112 134 101 143 0.82 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_16 - 402 VirC1 PF07015.6 231 0.00032 11.8 0.0 2 2 6.8e-05 0.0036 8.4 0.0 83 154 245 322 232 361 0.70 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_8 - 122 HTH_Tnp_ISL3 PF13542.1 52 0.00019 12.7 1.6 1 2 7.2e-06 0.00038 11.7 0.1 7 42 8 44 8 46 0.92 # 4440 # 4805 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_8 - 122 HTH_Tnp_ISL3 PF13542.1 52 0.00019 12.7 1.6 2 2 0.081 4.3 -1.3 0.0 24 34 53 62 51 64 0.81 # 4440 # 4805 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_8 - 122 CENP-B_N PF04218.8 53 1.7e-06 19.5 0.0 1 1 6e-08 3.2e-06 18.6 0.0 3 44 9 51 8 55 0.86 # 4440 # 4805 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_2 - 136 PaaX PF07848.7 70 0.00043 12.3 0.0 1 1 1.2e-05 0.00065 11.8 0.0 16 68 24 80 13 82 0.71 # 101 # 508 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.650 1_31 - 763 T4SS-DNA_transf PF02534.9 469 2.6e-10 31.4 0.0 1 1 1.1e-11 5.8e-10 30.2 0.0 250 361 362 476 198 500 0.76 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 4_1 - 235 DDE_Tnp_IS240 PF13610.1 140 4e-53 171.2 0.0 1 1 2.1e-54 5.6e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 64 # 768 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_7 - 149 DDE_Tnp_IS240 PF13610.1 140 1.1e-06 20.6 0.0 1 1 5.7e-08 1.5e-06 20.2 0.0 24 137 5 120 3 122 0.89 # 3904 # 4350 # 1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.530 1_2 - 136 MarR_2 PF12802.2 62 5.1e-05 15.0 0.7 1 3 0.00053 0.028 6.2 0.1 4 33 8 40 7 44 0.81 # 101 # 508 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.650 1_2 - 136 MarR_2 PF12802.2 62 5.1e-05 15.0 0.7 2 3 0.00072 0.038 5.8 0.0 41 58 54 71 48 73 0.84 # 101 # 508 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.650 1_2 - 136 MarR_2 PF12802.2 62 5.1e-05 15.0 0.7 3 3 0.075 4 -0.7 0.0 17 31 92 104 80 105 0.80 # 101 # 508 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.650 1_31 - 763 AAA_10 PF12846.2 304 8.1e-11 33.8 0.0 1 1 2.7e-11 1.4e-09 29.7 0.0 3 296 187 494 186 500 0.68 # 24518 # 26806 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_12 - 326 HTH_20 PF12840.2 61 4.1e-05 15.4 0.0 1 2 0.00073 0.039 5.9 0.0 24 47 102 125 97 125 0.89 # 9347 # 10324 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.520 1_12 - 326 HTH_20 PF12840.2 61 4.1e-05 15.4 0.0 2 2 0.00034 0.018 6.9 0.1 19 58 213 259 185 262 0.77 # 9347 # 10324 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.520 1_16 - 402 ArsA_ATPase PF02374.10 305 0.00017 12.7 0.0 1 1 7.8e-06 0.00041 11.4 0.0 4 136 113 255 110 257 0.67 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_16 - 402 AAA_31 PF13614.1 157 1.9e-08 26.4 0.1 1 2 1.1e-05 0.00059 11.8 0.0 2 91 111 205 110 225 0.85 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_16 - 402 AAA_31 PF13614.1 157 1.9e-08 26.4 0.1 2 2 1.1e-05 0.00056 11.9 0.0 109 148 237 275 227 280 0.87 # 12674 # 13879 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 3_3 - 272 Pterin_bind PF00809.17 210 6e-61 197.4 0.0 1 1 1.4e-62 7.2e-61 197.2 0.0 1 209 10 216 10 217 0.98 # 1707 # 2522 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.608 1_32 - 1757 AAA_11 PF13086.1 236 0.00017 13.2 0.0 1 1 3.1e-06 0.00017 13.2 0.0 2 75 969 1039 968 1059 0.80 # 26806 # 32076 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_5 - 160 HTH_21 PF13276.1 60 3.9e-19 60.5 2.9 1 1 2.1e-20 1.1e-18 59.1 2.9 2 60 46 103 44 103 0.94 # 1193 # 1672 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/72765773-d774-4910-b991-bd950a14a81b # Target file: checkm_output/bins/pm618/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm618/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/72765773-d774-4910-b991-bd950a14a81b checkm_output/bins/pm618/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:10:31 2017 # [ok]