# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 92 Zn_Tnp_IS1 PF03811.8 36 1e-23 74.5 3.6 1 1 4e-25 1.9e-23 73.6 3.6 1 36 1 36 1 36 0.99 # 15379 # 15654 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_3 - 95 HTH_22 PF13309.1 64 5.2e-07 21.3 0.1 1 1 8e-08 1.9e-06 19.5 0.0 19 64 4 44 1 44 0.88 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_26 - 187 HTH_22 PF13309.1 64 1.3e-05 16.8 0.5 1 2 0.088 2.1 0.1 0.0 23 38 70 85 57 85 0.79 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_26 - 187 HTH_22 PF13309.1 64 1.3e-05 16.8 0.5 2 2 6e-06 0.00014 13.5 0.0 47 64 166 183 164 183 0.92 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_16 - 424 Cdd1 PF11731.3 93 0.00016 13.5 0.1 1 1 1.1e-05 0.00054 11.8 0.0 10 47 177 214 143 227 0.86 # 11632 # 12903 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_24 - 129 HTH_38 PF13936.1 44 0.00014 13.3 0.0 1 1 8.1e-06 0.0002 12.9 0.0 5 31 12 41 8 45 0.83 # 18905 # 19291 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_3 - 95 HTH_38 PF13936.1 44 0.00023 12.6 0.7 1 1 2.2e-05 0.00053 11.5 0.0 17 42 19 44 3 45 0.77 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_38 - 288 TIGR01830 TIGR01830 239 8.6e-35 112.0 0.0 1 1 2.7e-36 1.3e-34 111.5 0.0 2 189 12 195 11 202 0.95 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_45 - 251 HTH_Tnp_4 PF13613.1 53 0.00033 12.1 0.3 1 1 4.2e-05 0.002 9.6 0.1 28 52 53 77 29 78 0.87 # 37683 # 38435 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_3 - 95 TetR_N PF00440.18 47 6.3e-06 17.7 0.3 1 1 3.2e-07 1.6e-05 16.5 0.0 4 35 13 41 12 42 0.93 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_14 - 402 CbiA PF01656.18 195 7.3e-19 59.8 0.0 1 1 2.8e-20 1.4e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 9371 # 10576 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_3 - 95 Sigma70_r4_2 PF08281.7 54 5.7e-05 14.5 1.8 1 2 4.5e-06 0.00011 13.6 0.1 22 48 18 44 11 47 0.83 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 95 Sigma70_r4_2 PF08281.7 54 5.7e-05 14.5 1.8 2 2 0.073 1.8 0.1 0.2 2 15 63 76 62 82 0.78 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_15 - 325 Sigma70_r4_2 PF08281.7 54 0.0002 12.7 0.1 1 1 2.7e-05 0.00066 11.1 0.1 23 50 157 184 152 185 0.88 # 10576 # 11550 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_12 - 289 Rep_3 PF01051.16 222 5.8e-49 158.5 0.0 1 1 1.5e-50 7.1e-49 158.2 0.0 3 213 65 278 63 283 0.95 # 7644 # 8510 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.439 1_2 - 196 rve PF00665.21 120 4.5e-16 50.9 0.1 1 1 4.4e-17 7.1e-16 50.3 0.1 3 77 106 178 104 191 0.93 # 621 # 1208 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.529 1_41 - 235 rve PF00665.21 120 1.6e-13 42.8 0.1 1 2 0.045 0.71 1.9 0.0 78 102 27 49 6 54 0.84 # 34413 # 35117 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_41 - 235 rve PF00665.21 120 1.6e-13 42.8 0.1 2 2 1.8e-13 2.9e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 34413 # 35117 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_45 - 251 rve PF00665.21 120 4.5e-08 25.2 0.0 1 1 5.8e-09 9.3e-08 24.1 0.0 8 82 86 157 81 193 0.89 # 37683 # 38435 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_3 - 95 Terminase_5 PF06056.7 58 9.8e-06 17.0 0.0 1 1 3.4e-07 1.6e-05 16.3 0.0 12 39 21 48 12 63 0.87 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_15 - 325 CPSase_L_D3 PF02787.14 123 2.4e-05 16.0 0.7 1 2 0.018 0.86 1.3 0.0 75 116 16 55 6 57 0.82 # 10576 # 11550 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_15 - 325 CPSase_L_D3 PF02787.14 123 2.4e-05 16.0 0.7 2 2 7.2e-06 0.00034 12.3 0.2 48 97 133 185 124 190 0.84 # 10576 # 11550 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_3 - 95 HTH_Tnp_1 PF01527.15 76 1.2e-19 61.9 0.2 1 1 6.9e-21 1.7e-19 61.5 0.2 4 76 3 74 1 74 0.94 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_41 - 235 HTH_Tnp_1 PF01527.15 76 0.00012 14.0 0.3 1 1 1.1e-05 0.00026 12.9 0.3 4 51 6 58 4 63 0.79 # 34413 # 35117 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_41 - 235 DDE_3 PF13358.1 146 0.00033 12.3 0.0 1 1 2.1e-05 0.001 10.7 0.0 32 90 82 141 59 146 0.87 # 34413 # 35117 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_14 - 402 MipZ PF09140.6 261 9e-07 20.0 0.0 1 2 0.0027 0.13 3.1 0.0 3 50 111 163 109 193 0.73 # 9371 # 10576 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_14 - 402 MipZ PF09140.6 261 9e-07 20.0 0.0 2 2 8.7e-07 4.2e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 9371 # 10576 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_22 - 308 DDE_Tnp_1 PF01609.16 213 1.9e-24 78.2 0.6 1 1 5.3e-26 2.6e-24 77.8 0.6 4 205 115 286 112 293 0.85 # 17842 # 18765 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_15 - 325 Trp_repressor PF01371.14 88 0.0004 12.2 1.9 1 1 3.9e-05 0.0019 10.1 0.1 15 69 127 180 119 187 0.81 # 10576 # 11550 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_3 - 95 Sigma70_r4 PF04545.11 50 7.6e-05 13.9 0.7 1 2 2.2e-05 0.0011 10.2 0.2 13 33 15 35 11 37 0.83 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 95 Sigma70_r4 PF04545.11 50 7.6e-05 13.9 0.7 2 2 0.035 1.7 -0.0 0.0 6 14 75 83 75 89 0.83 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_15 - 325 HTH_37 PF13744.1 80 3.6e-05 15.4 2.7 1 2 0.011 0.54 2.1 0.0 27 56 9 38 6 43 0.82 # 10576 # 11550 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_15 - 325 HTH_37 PF13744.1 80 3.6e-05 15.4 2.7 2 2 3e-05 0.0015 10.3 0.2 27 53 156 182 134 185 0.87 # 10576 # 11550 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_8 - 400 zf-C4_Topoisom PF01396.14 39 0.0057 8.1 9.2 1 3 0.0002 0.0097 7.4 0.3 22 36 53 66 43 69 0.86 # 3754 # 4953 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_8 - 400 zf-C4_Topoisom PF01396.14 39 0.0057 8.1 9.2 2 3 0.0041 0.2 3.2 0.5 2 10 73 81 72 82 0.83 # 3754 # 4953 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_8 - 400 zf-C4_Topoisom PF01396.14 39 0.0057 8.1 9.2 3 3 0.022 1 0.9 0.2 3 15 362 374 361 379 0.86 # 3754 # 4953 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_3 - 95 MerR_1 PF13411.1 69 4.3e-06 18.4 0.0 1 1 2e-07 9.7e-06 17.2 0.0 1 22 23 44 23 51 0.94 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_26 - 187 NUMOD1 PF07453.8 37 0.00038 12.2 0.0 1 1 1.5e-05 0.00071 11.4 0.0 20 37 165 182 164 182 0.92 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_3 - 95 LZ_Tnp_IS481 PF13011.1 85 1.2e-05 17.5 0.1 1 1 3.3e-07 1.6e-05 17.1 0.1 17 50 14 47 2 87 0.84 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_38 - 288 adh_short_C2 PF13561.1 241 1.7e-19 62.4 0.0 1 1 4.6e-21 2.2e-19 62.0 0.0 5 182 17 188 15 220 0.90 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_3 - 95 HTH_Tnp_IS630 PF01710.11 120 2.8e-07 22.1 0.1 1 1 6.8e-09 3.2e-07 21.9 0.1 13 82 17 90 6 94 0.75 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_22 - 308 DDE_Tnp_1_3 PF13612.1 155 0.00033 12.3 0.0 1 1 2e-05 0.00098 10.8 0.0 47 111 148 216 145 223 0.83 # 17842 # 18765 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_38 - 288 adh_short PF00106.20 167 9.4e-34 108.6 0.3 1 2 8.5e-35 4.1e-33 106.5 0.1 3 165 11 171 9 173 0.93 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_38 - 288 adh_short PF00106.20 167 9.4e-34 108.6 0.3 2 2 0.047 2.3 -0.0 0.0 66 110 227 274 205 279 0.66 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_41 - 235 HTH_32 PF13565.1 77 6.2e-07 22.1 0.2 1 1 1.1e-07 2.7e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 34413 # 35117 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_45 - 251 HTH_32 PF13565.1 77 3.8e-05 16.4 0.1 1 2 0.00019 0.0045 9.7 0.0 26 76 19 64 5 65 0.78 # 37683 # 38435 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_45 - 251 HTH_32 PF13565.1 77 3.8e-05 16.4 0.1 2 2 0.012 0.3 3.9 0.0 26 54 110 146 97 161 0.72 # 37683 # 38435 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_3 - 95 HTH_3 PF01381.17 55 1.7e-06 19.7 0.0 1 2 1.8e-07 8.8e-06 17.5 0.0 4 33 15 46 13 51 0.86 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 95 HTH_3 PF01381.17 55 1.7e-06 19.7 0.0 2 2 0.073 3.5 -0.5 0.0 39 52 80 93 79 94 0.80 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 95 HTH_23 PF13384.1 50 4.5e-09 27.7 3.6 1 2 6.7e-10 6.5e-09 27.2 0.2 10 40 14 45 9 59 0.83 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 95 HTH_23 PF13384.1 50 4.5e-09 27.7 3.6 2 2 0.064 0.62 1.8 0.5 7 24 62 86 56 91 0.53 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_41 - 235 HTH_23 PF13384.1 50 3.8e-06 18.4 0.5 1 2 0.079 0.76 1.6 0.0 7 27 11 35 7 36 0.69 # 34413 # 35117 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_41 - 235 HTH_23 PF13384.1 50 3.8e-06 18.4 0.5 2 2 9.3e-06 8.9e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 34413 # 35117 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_26 - 187 HTH_23 PF13384.1 50 5.1e-06 18.0 0.6 1 1 1.3e-06 1.2e-05 16.8 0.0 11 39 154 183 144 184 0.81 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_19 - 92 HTH_23 PF13384.1 50 1.8e-05 16.2 0.0 1 1 3.2e-06 3.1e-05 15.5 0.0 7 39 53 85 51 89 0.93 # 15379 # 15654 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_15 - 325 HTH_23 PF13384.1 50 9.1e-05 14.0 0.2 1 1 0.00012 0.0012 10.5 0.0 9 40 152 183 151 188 0.88 # 10576 # 11550 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_26 - 187 HTH_7 PF02796.10 45 1.4e-15 48.8 0.1 1 1 1.3e-16 3.1e-15 47.7 0.1 1 44 141 184 141 185 0.98 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_3 - 95 HTH_7 PF02796.10 45 2.1e-05 16.3 0.0 1 1 1.8e-06 4.4e-05 15.2 0.0 13 44 14 45 8 46 0.89 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 95 HTH_19 PF12844.2 64 6.3e-06 18.1 0.1 1 1 2.6e-07 1.3e-05 17.2 0.0 9 34 19 44 16 62 0.89 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_38 - 288 DUF1776 PF08643.5 299 7.8e-07 20.3 0.0 1 1 2.2e-08 1e-06 19.9 0.0 105 197 94 183 43 200 0.92 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_19 - 92 zinc_ribbon_4 PF13717.1 36 7.6e-06 17.5 2.8 1 1 3.6e-07 1.7e-05 16.4 2.8 3 35 6 39 5 40 0.86 # 15379 # 15654 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_24 - 129 Ribosomal_S20p PF01649.13 84 0.00013 14.2 0.1 1 1 4.8e-06 0.00023 13.4 0.1 6 59 56 109 53 118 0.75 # 18905 # 19291 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_38 - 288 NAD_binding_10 PF13460.1 183 8.5e-06 17.7 0.0 1 1 3.4e-07 1.6e-05 16.8 0.0 3 145 13 186 12 213 0.71 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_26 - 187 HTH_29 PF13551.1 112 1.6e-05 17.0 3.1 1 2 0.06 2.9 0.0 0.0 19 104 63 85 22 93 0.61 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_26 - 187 HTH_29 PF13551.1 112 1.6e-05 17.0 3.1 2 2 9e-06 0.00043 12.3 1.6 33 108 122 182 115 183 0.64 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_41 - 235 DDE_Tnp_IS66 PF03050.9 271 1.3e-12 39.3 0.6 1 1 7.5e-14 1.8e-12 38.9 0.4 5 131 10 143 6 158 0.86 # 34413 # 35117 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_45 - 251 DDE_Tnp_IS66 PF03050.9 271 1.1e-07 23.2 0.0 1 1 5.9e-09 1.4e-07 22.8 0.0 6 116 25 131 20 154 0.84 # 37683 # 38435 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_14 - 402 TIGR01968 TIGR01968 261 0.00041 11.3 0.0 1 2 0.0091 0.44 1.3 0.0 4 28 111 135 108 169 0.76 # 9371 # 10576 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_14 - 402 TIGR01968 TIGR01968 261 0.00041 11.3 0.0 2 2 0.00016 0.0075 7.1 0.0 102 138 235 271 226 288 0.87 # 9371 # 10576 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_16 - 424 IMS_HHH PF11798.3 32 1.2e-08 26.6 0.1 1 1 6.4e-10 3.1e-08 25.3 0.1 2 32 170 200 169 200 0.91 # 11632 # 12903 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_26 - 187 HTH_psq PF05225.11 45 0.00014 13.3 0.0 1 1 7.4e-06 0.00036 12.0 0.0 20 38 165 183 164 185 0.91 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_19 - 92 HTH_Tnp_IS1 PF12759.2 46 5.1e-32 101.0 0.2 1 1 1.7e-33 8.2e-32 100.4 0.2 1 45 43 87 43 88 0.99 # 15379 # 15654 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_3 - 95 HTH_28 PF13518.1 52 9.6e-09 27.1 0.2 1 1 1.5e-09 1.8e-08 26.2 0.2 1 35 10 45 10 47 0.90 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_26 - 187 HTH_28 PF13518.1 52 1.8e-06 19.8 0.1 1 1 1.5e-07 1.8e-06 19.8 0.1 8 34 156 183 149 184 0.83 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_19 - 92 HTH_28 PF13518.1 52 2e-05 16.5 0.0 1 1 2.4e-06 2.9e-05 15.9 0.0 4 36 55 87 53 91 0.90 # 15379 # 15654 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_41 - 235 HTH_28 PF13518.1 52 2.8e-05 16.0 1.2 1 1 1e-05 0.00012 14.0 1.2 22 36 40 54 13 55 0.76 # 34413 # 35117 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_15 - 325 HTH_24 PF13412.1 48 5.5e-05 14.5 0.1 1 1 1.1e-06 5.5e-05 14.5 0.1 15 39 158 182 151 184 0.84 # 10576 # 11550 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_3 - 95 HTH_10 PF04967.7 53 1.1e-06 20.1 0.1 1 2 1.9e-06 4.7e-05 14.9 0.0 21 47 20 46 19 48 0.92 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 95 HTH_10 PF04967.7 53 1.1e-06 20.1 0.1 2 2 0.01 0.25 2.9 0.0 2 14 75 87 75 89 0.90 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_26 - 187 HTH_10 PF04967.7 53 3e-05 15.5 0.3 1 1 8.2e-06 0.0002 12.9 0.0 28 45 166 183 164 184 0.93 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_3 - 95 HTH_31 PF13560.1 64 1.2e-05 17.3 0.2 1 1 4.8e-07 2.3e-05 16.5 0.2 12 53 20 61 11 63 0.90 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_34 - 192 Transposase_mut PF00872.13 381 5.3e-65 211.2 1.2 1 1 1.3e-66 6.3e-65 210.9 1.2 98 285 2 187 1 190 0.98 # 30616 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_48 - 221 Transposase_20 PF02371.11 87 8.1e-15 46.7 0.1 1 1 3.1e-16 1.5e-14 45.8 0.1 9 86 100 177 94 178 0.93 # 40265 # 40927 # -1 # ID=1_48;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 1_3 - 95 HTH_Tnp_ISL3 PF13542.1 52 1.9e-07 22.1 0.0 1 1 6e-09 2.9e-07 21.5 0.0 10 50 4 45 3 47 0.95 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 95 MerR PF00376.18 38 2e-05 16.0 0.0 1 1 8.6e-07 4.1e-05 15.0 0.0 1 21 24 44 24 45 0.91 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_26 - 187 CENP-B_N PF04218.8 53 1.4e-05 16.4 0.1 1 1 6.4e-07 3.1e-05 15.3 0.0 18 43 157 182 154 186 0.86 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_20 - 98 DDE_Tnp_IS1 PF03400.8 131 1.1e-48 156.5 0.2 1 1 2.6e-50 1.2e-48 156.4 0.2 35 131 1 97 1 97 0.99 # 15783 # 16076 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_19 - 92 zinc_ribbon_5 PF13719.1 37 3.5e-06 18.5 2.8 1 1 1.8e-07 8.6e-06 17.2 2.8 3 36 6 40 5 41 0.83 # 15379 # 15654 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_41 - 235 DDE_Tnp_IS240 PF13610.1 140 1e-53 172.9 0.1 1 1 9e-55 1.4e-53 172.5 0.1 4 139 75 212 73 213 0.99 # 34413 # 35117 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_45 - 251 DDE_Tnp_IS240 PF13610.1 140 1.8e-48 155.9 0.0 1 1 2e-49 3.1e-48 155.2 0.0 3 138 86 222 84 224 0.98 # 37683 # 38435 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_2 - 196 DDE_Tnp_IS240 PF13610.1 140 9.6e-05 14.3 0.1 1 1 1.1e-05 0.00017 13.4 0.1 2 67 110 177 109 190 0.84 # 621 # 1208 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.529 1_3 - 95 HTH_26 PF13443.1 63 7.1e-05 14.9 0.0 1 1 2.8e-06 0.00014 14.0 0.0 6 32 18 44 16 50 0.90 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_3 - 95 HTH_17 PF12728.2 51 1.7e-06 20.1 0.1 1 1 8.2e-08 3.9e-06 19.0 0.0 2 23 23 44 22 53 0.93 # 1256 # 1540 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_19 - 92 Zn_Tnp_IS1595 PF12760.2 46 5e-05 15.0 2.1 1 1 3.8e-06 9.1e-05 14.2 2.1 21 46 8 38 4 38 0.79 # 15379 # 15654 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_8 - 400 Zn_Tnp_IS1595 PF12760.2 46 0.0033 9.2 6.7 1 2 0.0051 0.12 4.1 1.2 19 32 73 85 57 97 0.74 # 3754 # 4953 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_8 - 400 Zn_Tnp_IS1595 PF12760.2 46 0.0033 9.2 6.7 2 2 0.001 0.024 6.4 0.4 8 32 350 374 346 379 0.84 # 3754 # 4953 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.562 1_26 - 187 HTH_11 PF08279.7 55 2.9e-05 15.6 0.0 1 2 0.052 2.5 -0.2 0.0 33 47 74 88 72 94 0.67 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_26 - 187 HTH_11 PF08279.7 55 2.9e-05 15.6 0.0 2 2 4.6e-06 0.00022 12.8 0.0 19 37 165 183 162 184 0.91 # 23109 # 23669 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_22 - 308 DDE_Tnp_1_5 PF13737.1 112 1.7e-47 152.1 0.1 1 2 5e-48 2.4e-46 148.4 0.0 1 112 19 130 19 130 0.96 # 17842 # 18765 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_22 - 308 DDE_Tnp_1_5 PF13737.1 112 1.7e-47 152.1 0.1 2 2 0.037 1.8 0.7 0.0 42 68 263 291 250 297 0.81 # 17842 # 18765 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_38 - 288 RmlD_sub_bind PF04321.12 287 0.00036 11.3 0.0 1 1 1.4e-05 0.00065 10.5 0.0 3 69 11 100 8 123 0.84 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_14 - 402 AAA_31 PF13614.1 157 4.5e-05 15.3 0.0 1 1 5.5e-06 0.00026 12.8 0.0 108 147 235 273 230 279 0.86 # 9371 # 10576 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_35 - 264 Pterin_bind PF00809.17 210 6.7e-62 200.4 0.1 1 1 1.7e-63 8e-62 200.1 0.1 1 210 7 215 7 215 0.97 # 31549 # 32340 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_34 - 192 MULE PF10551.4 93 5.3e-19 60.2 0.0 1 1 1.8e-20 8.9e-19 59.4 0.0 12 92 81 164 70 165 0.86 # 30616 # 31191 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_38 - 288 KR PF08659.5 181 2.6e-13 41.9 0.1 1 1 1.2e-14 5.8e-13 40.7 0.1 4 167 12 172 10 185 0.86 # 33092 # 33955 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_16 - 424 DNA_pol_lambd_f PF10391.4 52 3.4e-05 15.3 0.1 1 1 4.5e-06 0.00021 12.7 0.0 5 29 182 206 178 217 0.87 # 11632 # 12903 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_2 - 196 HTH_21 PF13276.1 60 4.2e-15 47.5 1.7 1 1 1.7e-16 8.2e-15 46.5 1.7 3 55 27 78 24 87 0.91 # 621 # 1208 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.529 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/8d56de87-fb53-41d3-b0c1-5b3dc638958d # Target file: checkm_output/bins/pm612/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm612/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8d56de87-fb53-41d3-b0c1-5b3dc638958d checkm_output/bins/pm612/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:10:27 2017 # [ok]