# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_9 - 653 KaiC PF06745.8 227 3.6e-05 13.4 0.0 1 1 4e-06 7.2e-05 12.4 0.0 18 53 254 289 250 291 0.93 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_2 - 186 HTH_IclR PF09339.5 52 2.2e-06 17.7 0.2 1 1 4.6e-07 8.2e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_2 - 186 HTH_22 PF13309.1 64 5.1e-05 13.6 1.5 1 1 1.2e-05 0.00021 11.6 0.1 35 63 156 179 143 180 0.76 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 2_9 - 653 FtsK_SpoIIIE PF01580.13 205 0.00015 11.7 0.0 1 1 2.4e-05 0.00043 10.3 0.0 14 59 229 277 218 280 0.78 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_2 - 186 HTH_40 PF14493.1 91 0.00012 12.8 0.6 1 1 2.1e-05 0.00039 11.2 0.1 7 32 152 177 147 183 0.89 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_2 - 186 HTH_38 PF13936.1 44 5.6e-07 19.6 1.4 1 1 5.9e-08 1.1e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 2_8 - 244 MarR PF01047.17 59 2.6e-05 14.4 0.0 1 1 2.9e-06 5.1e-05 13.5 0.0 36 59 53 76 25 76 0.94 # 2700 # 3431 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 3_4 - 562 DUF3584 PF12128.3 1201 0.023 2.3 22.2 1 2 7.8e-05 0.0014 6.4 3.2 598 657 320 379 313 385 0.90 # 1934 # 3619 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 3_4 - 562 DUF3584 PF12128.3 1201 0.023 2.3 22.2 2 2 0.0027 0.048 1.3 11.3 608 673 399 464 394 471 0.82 # 1934 # 3619 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 2_8 - 244 PadR PF03551.9 75 4e-05 13.9 0.0 1 1 7.1e-06 0.00013 12.3 0.0 34 69 51 85 41 89 0.93 # 2700 # 3431 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_4 - 235 rve PF00665.21 120 5.9e-14 42.7 0.1 1 2 0.015 0.27 1.9 0.0 78 102 27 49 6 54 0.84 # 4454 # 5158 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 235 rve PF00665.21 120 5.9e-14 42.7 0.1 2 2 6.1e-14 1.1e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 4454 # 5158 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 235 HTH_Tnp_1 PF01527.15 76 4.5e-05 13.9 0.3 1 1 5.4e-06 9.7e-05 12.9 0.3 4 51 6 58 4 63 0.79 # 4454 # 5158 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_9 - 653 TraG-D_C PF12696.2 128 8.9e-10 29.1 0.0 1 1 8.2e-11 1.5e-09 28.3 0.0 1 127 463 589 463 590 0.79 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_4 - 235 DDE_3 PF13358.1 146 0.00012 12.3 0.0 1 1 2.1e-05 0.00037 10.7 0.0 32 90 82 141 59 146 0.87 # 4454 # 5158 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_8 - 244 Replic_Relax PF13814.1 191 7.3e-10 29.5 0.0 1 1 1.1e-10 2e-09 28.1 0.0 1 174 25 179 25 186 0.81 # 2700 # 3431 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 2_8 - 244 HTH_27 PF13463.1 68 8.7e-07 19.8 0.0 1 2 7.8e-06 0.00014 12.7 0.0 35 60 50 76 24 85 0.78 # 2700 # 3431 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 2_8 - 244 HTH_27 PF13463.1 68 8.7e-07 19.8 0.0 2 2 0.0025 0.046 4.7 0.0 6 28 133 157 129 161 0.88 # 2700 # 3431 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_2 - 186 HTH_Tnp_IS630 PF01710.11 120 1.7e-05 15.0 0.0 1 1 1.9e-06 3.5e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 235 HTH_32 PF13565.1 77 2.3e-07 22.1 0.2 1 1 5.6e-08 1e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 4454 # 5158 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 235 HTH_23 PF13384.1 50 1.1e-06 18.8 0.7 1 2 0.032 0.28 1.6 0.0 7 27 11 35 7 36 0.69 # 4454 # 5158 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 235 HTH_23 PF13384.1 50 1.1e-06 18.8 0.7 2 2 3.7e-06 3.4e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 4454 # 5158 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_23 PF13384.1 50 7.9e-06 16.0 0.3 1 1 8.8e-07 7.9e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_2 - 186 HTH_7 PF02796.10 45 4.2e-14 42.7 1.1 1 1 5.1e-15 9.3e-14 41.6 0.1 1 44 141 181 141 182 0.97 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_2 - 186 HTH_29 PF13551.1 112 1.9e-05 15.3 0.6 1 2 0.025 0.44 1.3 0.2 24 46 114 136 88 153 0.67 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_2 - 186 HTH_29 PF13551.1 112 1.9e-05 15.3 0.6 2 2 1e-05 0.00018 12.2 0.0 4 35 151 181 148 184 0.90 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 235 DDE_Tnp_IS66 PF03050.9 271 4.2e-13 39.5 0.3 1 1 3e-14 5.4e-13 39.2 0.3 5 132 10 144 6 174 0.87 # 4454 # 5158 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_9 - 653 TrwB_AAD_bind PF10412.4 386 1.8e-07 20.5 0.0 1 2 4.9e-07 8.8e-06 14.9 0.0 14 57 254 298 245 311 0.85 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 2_9 - 653 TrwB_AAD_bind PF10412.4 386 1.8e-07 20.5 0.0 2 2 0.0015 0.027 3.5 0.0 296 368 518 591 424 605 0.84 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_4 - 235 HTH_28 PF13518.1 52 1e-05 16.0 1.2 1 1 5.1e-06 4.6e-05 14.0 1.2 22 36 40 54 13 55 0.76 # 4454 # 5158 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_28 PF13518.1 52 2.4e-05 14.8 0.0 1 1 8.5e-06 7.6e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 235 DDE_Tnp_IS240 PF13610.1 140 1.4e-53 171.2 0.0 1 1 1.1e-54 1.9e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 4454 # 5158 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_8 - 244 MarR_2 PF12802.2 62 6.5e-06 16.3 0.7 1 1 7.3e-07 1.3e-05 15.4 0.3 15 62 29 75 5 75 0.82 # 2700 # 3431 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_2 - 186 TrmB PF01978.14 68 1e-05 15.8 0.0 1 1 2.3e-06 2e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 2_8 - 244 TrmB PF01978.14 68 0.00014 12.1 0.1 1 1 6e-05 0.00054 10.2 0.0 23 55 34 67 28 72 0.85 # 2700 # 3431 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 2_9 - 653 AAA_10 PF12846.2 304 5.7e-16 49.2 0.0 1 1 4.4e-16 8e-15 45.4 0.0 3 293 257 537 255 545 0.78 # 3431 # 5389 # -1 # ID=2_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.627 1_2 - 186 HTH_20 PF12840.2 61 3.6e-07 20.5 0.2 1 2 0.0037 0.067 3.6 0.0 33 52 8 27 4 28 0.91 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_2 - 186 HTH_20 PF12840.2 61 3.6e-07 20.5 0.2 2 2 9.1e-06 0.00016 12.0 0.1 3 43 110 177 108 180 0.91 # 3201 # 3758 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 3_4 - 562 AAA_13 PF13166.1 712 0.073 1.8 21.5 1 2 0.001 0.019 3.8 4.6 406 458 325 377 302 386 0.53 # 1934 # 3619 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 3_4 - 562 AAA_13 PF13166.1 712 0.073 1.8 21.5 2 2 0.00098 0.018 3.9 8.8 83 158 399 458 382 495 0.50 # 1934 # 3619 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/f47478a3-32fe-4ea3-a889-d9009c7933a7 # Target file: checkm_output/bins/pm588/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm588/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f47478a3-32fe-4ea3-a889-d9009c7933a7 checkm_output/bins/pm588/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:09:41 2017 # [ok]