# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_5 - 655 KaiC PF06745.8 227 8.9e-05 13.4 0.0 1 1 4e-06 0.00018 12.4 0.0 18 53 256 291 252 293 0.93 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_5 - 301 TrkA_N PF02254.13 116 1.5e-05 16.8 0.0 1 1 8e-07 3.5e-05 15.6 0.0 1 42 7 48 7 79 0.86 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 3_4 - 186 HTH_IclR PF09339.5 52 5.5e-06 17.7 0.2 1 1 4.6e-07 2e-05 15.9 0.0 15 40 155 180 151 181 0.85 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 3_4 - 186 HTH_22 PF13309.1 64 0.0001 13.8 1.2 1 1 1.2e-05 0.00052 11.6 0.1 35 63 156 179 143 180 0.76 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_5 - 301 NAD_binding_11 PF14833.1 122 2.1e-38 122.9 0.3 1 2 0.029 1.3 0.9 1.1 8 53 96 141 92 153 0.85 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 NAD_binding_11 PF14833.1 122 2.1e-38 122.9 0.3 2 2 4.7e-40 2.1e-38 122.9 0.3 1 121 170 289 170 290 0.98 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_4 - 254 HTH_AsnC-type PF13404.1 42 0.00022 12.6 0.3 1 1 1.4e-05 0.00063 11.1 0.3 7 42 9 44 8 44 0.94 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_4 - 254 HTH_DeoR PF08220.7 57 1.2e-20 64.6 1.0 1 1 7.1e-22 3.1e-20 63.3 1.0 1 55 6 60 6 61 0.97 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_1 - 92 HTH_Tnp_Tc3_2 PF01498.13 72 0.0002 13.2 0.0 1 1 6.5e-06 0.00029 12.7 0.0 14 40 26 52 14 64 0.90 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 2_5 - 655 FtsK_SpoIIIE PF01580.13 205 0.00037 11.7 0.0 1 1 2.4e-05 0.001 10.2 0.0 14 59 231 279 220 282 0.78 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 3_4 - 186 HTH_40 PF14493.1 91 0.00028 12.9 0.6 1 1 2.1e-05 0.00094 11.2 0.1 7 32 152 177 147 183 0.89 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 3_4 - 186 HTH_38 PF13936.1 44 2.6e-06 18.7 0.0 1 1 1.2e-07 2.6e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 3_1 - 92 HTH_38 PF13936.1 44 0.00032 12.1 0.0 1 1 3.5e-05 0.00076 10.8 0.0 30 43 40 53 38 54 0.90 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_5 - 301 2-Hacid_dh_C PF02826.14 178 4.7e-07 20.9 0.1 1 1 1.9e-08 8.4e-07 20.0 0.1 36 146 4 118 2 124 0.86 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_4 - 254 MarR PF01047.17 59 1.6e-07 22.8 0.1 1 1 2e-08 4.4e-07 21.4 0.1 7 47 9 49 5 52 0.95 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_6 - 244 MarR PF01047.17 59 6.4e-05 14.4 0.0 1 1 5.7e-06 0.00013 13.5 0.0 36 59 53 76 25 76 0.94 # 5327 # 6058 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_5 - 301 TIGR00873 TIGR00873 467 2.8e-09 27.6 0.4 1 1 8.2e-11 3.6e-09 27.3 0.4 2 213 7 209 6 229 0.80 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_2 - 179 DUF3584 PF12128.3 1201 0.00063 8.8 7.0 1 1 1.9e-05 0.00082 8.4 7.0 608 674 16 82 12 89 0.83 # 845 # 1381 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.439 1_5 - 301 UDPG_MGDP_dh_N PF03721.9 185 3.2e-06 18.4 0.2 1 2 2e-06 8.7e-05 13.7 0.1 2 39 6 43 5 50 0.92 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 UDPG_MGDP_dh_N PF03721.9 185 3.2e-06 18.4 0.2 2 2 0.0061 0.27 2.3 0.0 107 139 86 117 82 126 0.77 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 2_6 - 244 PadR PF03551.9 75 9.8e-05 13.9 0.0 1 1 7.1e-06 0.00031 12.3 0.0 34 69 51 85 41 89 0.93 # 5327 # 6058 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_1 - 147 rve PF00665.21 120 5.2e-13 41.0 0.0 1 1 4.6e-14 6.7e-13 40.6 0.0 9 119 18 125 12 126 0.89 # 2 # 442 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 4_1 - 44 rve PF00665.21 120 2.7e-05 16.1 0.1 1 1 1.8e-06 2.7e-05 16.1 0.1 11 46 1 34 1 42 0.82 # 249 # 380 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 3_1 - 92 rve PF00665.21 120 0.00019 13.3 0.2 1 2 0.0077 0.11 4.4 0.0 77 102 26 49 4 55 0.82 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 3_1 - 92 rve PF00665.21 120 0.00019 13.3 0.2 2 2 0.00091 0.013 7.4 0.0 9 28 75 92 69 92 0.84 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_4 - 254 Fe_dep_repress PF01325.14 60 6.9e-07 21.0 0.2 1 1 4.1e-08 1.8e-06 19.6 0.1 13 53 10 50 8 55 0.93 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_5 - 301 Methyltransf_26 PF13659.1 117 0.0011 10.8 6.3 1 1 4.6e-05 0.002 9.9 6.3 13 105 14 155 6 246 0.76 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 F420_oxidored PF03807.12 96 9.5e-07 21.0 0.6 1 1 6.5e-08 2.9e-06 19.5 0.2 2 78 7 79 6 98 0.82 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 3_1 - 92 HTH_Tnp_1 PF01527.15 76 1.3e-05 16.9 0.3 1 1 6.3e-07 2.8e-05 15.8 0.3 4 52 6 59 4 64 0.79 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 2_5 - 655 TraG-D_C PF12696.2 128 2.2e-09 29.0 0.0 1 1 8.3e-11 3.6e-09 28.3 0.0 1 127 465 591 465 592 0.79 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_1 - 147 DDE_3 PF13358.1 146 0.00022 12.8 0.0 1 1 6.6e-06 0.00029 12.4 0.0 32 90 25 84 6 106 0.89 # 2 # 442 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_15 - 85 DivIC PF04977.10 80 0.0007 10.9 5.2 1 2 0.055 2.4 -0.5 0.0 14 37 4 27 1 37 0.60 # 10151 # 10405 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_15 - 85 DivIC PF04977.10 80 0.0007 10.9 5.2 2 2 5.4e-06 0.00024 12.4 2.2 15 52 35 72 27 77 0.89 # 10151 # 10405 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_4 - 254 Sigma70_r4 PF04545.11 50 0.0018 9.4 4.2 1 1 1.3e-05 0.00058 11.0 0.4 7 39 5 38 5 43 0.90 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_6 - 244 Replic_Relax PF13814.1 191 1.8e-09 29.5 0.0 1 1 1.1e-10 4.8e-09 28.1 0.0 1 174 25 179 25 186 0.81 # 5327 # 6058 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_4 - 254 Rrf2 PF02082.15 83 8.3e-07 20.9 0.3 1 1 4.9e-08 2.2e-06 19.6 0.2 17 60 11 54 9 70 0.84 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_6 - 244 HTH_27 PF13463.1 68 2.1e-06 19.8 0.0 1 2 1.6e-05 0.00034 12.7 0.0 35 60 50 76 24 85 0.78 # 5327 # 6058 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 2_6 - 244 HTH_27 PF13463.1 68 2.1e-06 19.8 0.0 2 2 0.0051 0.11 4.7 0.0 6 28 133 157 129 161 0.88 # 5327 # 6058 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_4 - 254 HTH_27 PF13463.1 68 3.2e-05 16.0 0.1 1 1 3e-06 6.5e-05 15.0 0.1 5 49 7 50 5 70 0.88 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_4 - 254 DUF977 PF06163.6 127 7.9e-05 14.2 0.3 1 1 4.9e-06 0.00022 12.8 0.3 15 57 8 50 4 65 0.87 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_4 - 186 HTH_Tnp_IS630 PF01710.11 120 4.1e-05 15.0 0.0 1 1 1.9e-06 8.6e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 3_1 - 92 HTH_32 PF13565.1 77 2.3e-07 23.4 0.0 1 1 8.4e-09 3.7e-07 22.7 0.0 26 76 5 50 2 51 0.83 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_4 - 254 GntR PF00392.16 64 1.5e-07 22.6 0.5 1 1 8.1e-09 3.6e-07 21.4 0.5 26 59 21 54 9 59 0.92 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_1 - 92 HTH_23 PF13384.1 50 8e-07 20.4 1.5 1 2 0.011 0.16 3.6 0.1 7 27 11 35 7 36 0.70 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 3_1 - 92 HTH_23 PF13384.1 50 8e-07 20.4 1.5 2 2 1.6e-06 2.3e-05 15.8 0.3 28 42 41 55 40 64 0.87 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_4 - 254 HTH_23 PF13384.1 50 1.1e-05 16.8 0.1 1 1 1.9e-06 2.8e-05 15.5 0.1 4 45 4 47 1 50 0.86 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_4 - 186 HTH_23 PF13384.1 50 1.9e-05 16.0 0.3 1 1 1.3e-06 1.9e-05 16.0 0.3 5 39 146 180 142 184 0.87 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 3_4 - 186 HTH_7 PF02796.10 45 8e-14 43.1 0.5 1 1 5.1e-15 2.3e-13 41.6 0.1 1 44 141 181 141 182 0.97 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 3_4 - 186 HTH_29 PF13551.1 112 4.7e-05 15.3 0.6 1 2 0.025 1.1 1.3 0.2 24 46 114 136 88 153 0.67 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 3_4 - 186 HTH_29 PF13551.1 112 4.7e-05 15.3 0.6 2 2 1e-05 0.00045 12.2 0.0 4 35 151 181 148 184 0.90 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_5 - 301 GIDA PF01134.17 392 0.0022 8.6 3.4 1 1 7e-05 0.0031 8.1 3.4 2 72 7 78 6 90 0.89 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 3_1 - 92 DDE_Tnp_IS66 PF03050.9 271 7.2e-10 30.2 0.0 1 1 3.4e-11 7.4e-10 30.2 0.0 5 89 10 90 6 92 0.90 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_1 - 147 DDE_Tnp_IS66 PF03050.9 271 3.7e-05 14.7 0.1 1 1 2.6e-06 5.7e-05 14.1 0.1 71 132 19 87 16 105 0.82 # 2 # 442 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_17 - 41 SprT-like PF10263.4 157 4.4e-05 14.9 0.0 1 1 1e-06 4.4e-05 14.9 0.0 4 37 2 34 1 39 0.86 # 11176 # 11298 # -1 # ID=1_17;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 2_5 - 655 TrwB_AAD_bind PF10412.4 386 4.3e-07 20.5 0.0 1 2 4.9e-07 2.2e-05 14.9 0.0 14 57 256 300 247 313 0.85 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 2_5 - 655 TrwB_AAD_bind PF10412.4 386 4.3e-07 20.5 0.0 2 2 0.0015 0.065 3.5 0.0 296 368 520 593 426 607 0.84 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 3_1 - 92 HTH_28 PF13518.1 52 7.4e-06 17.7 1.7 1 1 2.1e-06 3.1e-05 15.7 1.7 22 36 40 54 12 55 0.72 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_4 - 254 HTH_28 PF13518.1 52 1.8e-05 16.5 0.0 1 1 2.8e-06 4.1e-05 15.3 0.0 4 41 9 48 6 53 0.89 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_4 - 186 HTH_28 PF13518.1 52 5.8e-05 14.9 0.0 1 1 1.3e-05 0.00019 13.2 0.0 8 33 154 179 148 184 0.82 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 1_4 - 254 HTH_24 PF13412.1 48 1.6e-07 22.5 0.4 1 1 9.4e-09 4.2e-07 21.1 0.2 5 47 7 49 5 50 0.95 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_5 - 301 NAD_binding_2 PF03446.10 163 1.9e-41 133.3 3.7 1 1 6.4e-43 2.8e-41 132.8 3.7 2 162 5 166 4 167 0.96 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_4 - 254 MerR PF00376.18 38 0.00035 11.9 0.3 1 2 6.2e-05 0.0027 9.1 0.1 1 18 21 38 21 53 0.80 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_4 - 254 MerR PF00376.18 38 0.00035 11.9 0.3 2 2 0.078 3.4 -0.8 0.0 13 19 158 164 157 165 0.85 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_4 - 254 PaaX PF07848.7 70 1.3e-06 20.1 0.2 1 1 5.5e-08 2.4e-06 19.3 0.2 15 68 14 64 10 66 0.85 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_1 - 92 Arg_repressor PF01316.16 70 0.00033 12.0 0.0 1 1 1.1e-05 0.00049 11.4 0.0 23 46 29 52 26 55 0.92 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_5 - 301 AlaDh_PNT_C PF01262.16 168 5.8e-05 14.5 1.6 1 2 4.2e-06 0.00018 12.8 0.1 21 66 5 50 2 62 0.90 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 AlaDh_PNT_C PF01262.16 168 5.8e-05 14.5 1.6 2 2 0.028 1.2 0.4 0.2 13 42 84 113 72 117 0.84 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_5 - 301 3HCDH_N PF02737.13 180 1.1e-07 23.4 0.7 1 1 1.1e-08 4.7e-07 21.3 0.7 1 40 6 45 6 116 0.91 # 2652 # 3554 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.642 1_1 - 147 DDE_Tnp_IS240 PF13610.1 140 1.1e-50 163.0 0.0 1 1 1.1e-51 1.3e-50 162.8 0.0 4 131 18 147 16 147 0.99 # 2 # 442 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 4_1 - 44 DDE_Tnp_IS240 PF13610.1 140 1.3e-17 55.9 0.1 1 1 1.3e-18 1.4e-17 55.7 0.1 6 38 1 33 1 38 0.95 # 249 # 380 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.545 2_1 - 73 DDE_Tnp_IS240 PF13610.1 140 1.3e-14 46.1 0.0 1 1 1.3e-15 1.5e-14 45.9 0.0 90 139 1 50 1 51 0.97 # 1 # 219 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 3_1 - 92 DDE_Tnp_IS240 PF13610.1 140 4.8e-10 31.3 0.2 1 1 8.1e-11 8.9e-10 30.4 0.2 4 21 75 92 73 92 0.97 # 1 # 276 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_4 - 254 HTH_11 PF08279.7 55 4.2e-13 40.6 0.3 1 1 1.7e-14 7.3e-13 39.8 0.3 1 53 6 55 6 57 0.89 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_4 - 254 MarR_2 PF12802.2 62 6.7e-08 23.9 2.4 1 1 7.1e-09 1.6e-07 22.8 0.7 8 54 8 52 5 65 0.92 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_6 - 244 MarR_2 PF12802.2 62 1.6e-05 16.3 0.7 1 1 1.5e-06 3.2e-05 15.4 0.3 15 62 29 75 5 75 0.82 # 5327 # 6058 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_4 - 254 HTH_5 PF01022.15 47 9.1e-06 17.1 0.4 1 1 9.3e-07 4.1e-05 15.0 0.2 7 45 10 49 8 51 0.90 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_4 - 254 TrmB PF01978.14 68 1e-05 17.0 0.2 1 1 1.4e-06 2.1e-05 16.0 0.2 15 54 11 51 10 62 0.90 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_4 - 186 TrmB PF01978.14 68 2.5e-05 15.7 0.0 1 1 3.4e-06 5e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 2_6 - 244 TrmB PF01978.14 68 0.00033 12.1 0.1 1 1 9e-05 0.0013 10.2 0.0 23 55 34 67 28 72 0.85 # 5327 # 6058 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_4 - 254 HTH_Mga PF08280.6 59 6.1e-05 14.6 0.0 1 1 3.1e-06 0.00014 13.4 0.0 4 44 4 44 3 50 0.94 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_4 - 254 DUF1670 PF07900.6 220 4.7e-05 14.4 0.1 1 1 1.5e-06 6.7e-05 13.9 0.1 101 203 15 117 7 124 0.79 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_5 - 655 AAA_10 PF12846.2 304 1.4e-15 49.2 0.0 1 1 8.9e-16 2e-14 45.4 0.0 3 293 259 539 257 547 0.78 # 3363 # 5327 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_14 - 93 AAA_10 PF12846.2 304 9.4e-07 20.2 0.0 1 1 5.3e-08 1.2e-06 19.9 0.0 241 267 6 32 2 51 0.90 # 9584 # 9862 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_4 - 254 HTH_20 PF12840.2 61 2.6e-07 22.2 1.5 1 1 2.7e-08 6e-07 21.0 0.1 14 57 9 52 7 55 0.93 # 1630 # 2391 # -1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_4 - 186 HTH_20 PF12840.2 61 1.9e-06 19.4 0.1 1 2 0.016 0.36 2.5 0.0 33 52 8 27 6 28 0.90 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 3_4 - 186 HTH_20 PF12840.2 61 1.9e-06 19.4 0.1 2 2 1.8e-05 0.0004 12.0 0.1 3 43 110 177 108 180 0.91 # 1415 # 1972 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 2_2 - 179 AAA_13 PF13166.1 712 0.00056 10.1 5.7 1 1 1.5e-05 0.00066 9.9 5.7 97 162 16 79 10 116 0.44 # 845 # 1381 # 1 # ID=2_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.439 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/8b9afc2d-7407-4158-8df2-6a72a86cc1bb # Target file: checkm_output/bins/pm586/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm586/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8b9afc2d-7407-4158-8df2-6a72a86cc1bb checkm_output/bins/pm586/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:09:40 2017 # [ok]