# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 655 KaiC PF06745.8 227 3.4e-05 13.4 0.0 1 1 4e-06 6.8e-05 12.4 0.0 18 53 256 291 252 293 0.93 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_1 - 655 FtsK_SpoIIIE PF01580.13 205 0.00014 11.7 0.0 1 1 2.4e-05 0.0004 10.2 0.0 14 59 231 279 220 282 0.78 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_2 - 244 MarR PF01047.17 59 2.5e-05 14.4 0.0 1 1 2.9e-06 4.9e-05 13.5 0.0 36 59 53 76 25 76 0.94 # 2947 # 3678 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_16 - 276 DUF3584 PF12128.3 1201 0.0032 5.1 22.4 1 2 2.8e-05 0.00047 7.9 3.3 598 657 32 91 25 98 0.90 # 12017 # 12844 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_16 - 276 DUF3584 PF12128.3 1201 0.0032 5.1 22.4 2 2 0.00081 0.014 3.0 11.3 608 674 111 177 105 184 0.83 # 12017 # 12844 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_2 - 244 PadR PF03551.9 75 3.8e-05 13.9 0.0 1 1 7.1e-06 0.00012 12.3 0.0 34 69 51 85 41 89 0.93 # 2947 # 3678 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_15 - 235 rve PF00665.21 120 5.6e-14 42.7 0.1 1 2 0.015 0.25 1.9 0.0 78 102 27 49 6 54 0.84 # 10972 # 11676 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 235 rve PF00665.21 120 5.6e-14 42.7 0.1 2 2 6.1e-14 1e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 10972 # 11676 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 235 HTH_Tnp_1 PF01527.15 76 4.2e-05 13.9 0.3 1 1 5.4e-06 9.1e-05 12.9 0.3 4 51 6 58 4 63 0.79 # 10972 # 11676 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 655 TraG-D_C PF12696.2 128 8.4e-10 29.0 0.0 1 1 8.3e-11 1.4e-09 28.3 0.0 1 127 465 591 465 592 0.79 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_15 - 235 DDE_3 PF13358.1 146 0.00012 12.3 0.0 1 1 2.1e-05 0.00035 10.7 0.0 32 90 82 141 59 146 0.87 # 10972 # 11676 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 244 Replic_Relax PF13814.1 191 6.9e-10 29.5 0.0 1 1 1.1e-10 1.8e-09 28.1 0.0 1 174 25 179 25 186 0.81 # 2947 # 3678 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_2 - 244 HTH_27 PF13463.1 68 8.2e-07 19.8 0.0 1 2 7.8e-06 0.00013 12.7 0.0 35 60 50 76 24 85 0.78 # 2947 # 3678 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_2 - 244 HTH_27 PF13463.1 68 8.2e-07 19.8 0.0 2 2 0.0025 0.043 4.7 0.0 6 28 133 157 129 161 0.88 # 2947 # 3678 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_15 - 235 HTH_32 PF13565.1 77 2.2e-07 22.1 0.2 1 1 5.6e-08 9.6e-07 20.0 0.0 26 76 5 50 2 51 0.83 # 10972 # 11676 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 235 HTH_23 PF13384.1 50 1e-06 18.8 0.7 1 2 0.016 0.27 1.6 0.0 7 27 11 35 7 36 0.69 # 10972 # 11676 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 235 HTH_23 PF13384.1 50 1e-06 18.8 0.7 2 2 1.9e-06 3.2e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 10972 # 11676 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 235 DDE_Tnp_IS66 PF03050.9 271 4e-13 39.5 0.3 1 1 3e-14 5.1e-13 39.2 0.3 5 132 10 144 6 174 0.87 # 10972 # 11676 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_1 - 655 TrwB_AAD_bind PF10412.4 386 1.7e-07 20.5 0.0 1 2 4.9e-07 8.4e-06 14.9 0.0 14 57 256 300 247 313 0.85 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_1 - 655 TrwB_AAD_bind PF10412.4 386 1.7e-07 20.5 0.0 2 2 0.0015 0.025 3.5 0.0 296 368 520 593 426 607 0.84 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_15 - 235 HTH_28 PF13518.1 52 9.9e-06 16.0 1.2 1 1 2.5e-06 4.3e-05 14.0 1.2 22 36 40 54 13 55 0.76 # 10972 # 11676 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 235 DDE_Tnp_IS240 PF13610.1 140 1.3e-53 171.2 0.0 1 1 1.1e-54 1.8e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 10972 # 11676 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 244 MarR_2 PF12802.2 62 6.1e-06 16.3 0.7 1 1 7.3e-07 1.2e-05 15.4 0.3 15 62 29 75 5 75 0.82 # 2947 # 3678 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_2 - 244 TrmB PF01978.14 68 0.00013 12.1 0.1 1 1 3e-05 0.00051 10.2 0.0 23 55 34 67 28 72 0.85 # 2947 # 3678 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_1 - 655 AAA_10 PF12846.2 304 5.4e-16 49.2 0.0 1 1 4.5e-16 7.6e-15 45.4 0.0 3 293 259 539 257 547 0.78 # 983 # 2947 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.626 1_16 - 276 AAA_13 PF13166.1 712 0.0095 4.7 21.8 1 2 0.00029 0.0049 5.6 4.4 406 458 37 89 10 98 0.55 # 12017 # 12844 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 1_16 - 276 AAA_13 PF13166.1 712 0.0095 4.7 21.8 2 2 0.00037 0.0063 5.3 9.1 82 158 110 170 93 204 0.50 # 12017 # 12844 # 1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.460 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/cffeec19-4a03-4feb-bc77-00268785e842 # Target file: checkm_output/bins/pm584/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm584/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cffeec19-4a03-4feb-bc77-00268785e842 checkm_output/bins/pm584/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:09:38 2017 # [ok]