# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 68 HTH_IclR PF09339.5 52 7.3e-07 17.8 0.4 1 1 2e-07 1.2e-06 17.0 0.4 19 40 4 25 1 26 0.90 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 68 HTH_8 PF02954.14 42 2.9e-05 12.6 0.3 1 1 8.7e-06 5.2e-05 11.8 0.3 19 39 4 24 2 26 0.85 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_5 - 96 zf-C4_Topoisom PF01396.14 39 0.0058 5.2 17.2 1 3 0.0025 0.015 3.9 0.1 2 12 7 17 6 22 0.83 # 2300 # 2587 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.448 1_5 - 96 zf-C4_Topoisom PF01396.14 39 0.0058 5.2 17.2 2 3 0.0091 0.055 2.1 7.4 2 27 31 51 30 53 0.80 # 2300 # 2587 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.448 1_5 - 96 zf-C4_Topoisom PF01396.14 39 0.0058 5.2 17.2 3 3 0.0018 0.011 4.4 0.2 2 10 61 69 60 71 0.80 # 2300 # 2587 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.448 1_1 - 68 MerR_1 PF13411.1 69 1.8e-05 13.5 0.0 1 1 3.4e-06 2e-05 13.3 0.0 2 31 5 34 4 49 0.87 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 68 NUMOD1 PF07453.8 37 5.8e-05 12.0 0.1 1 1 1.5e-05 8.9e-05 11.4 0.1 18 33 5 20 4 24 0.90 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 68 HTH_3 PF01381.17 55 4.5e-05 12.3 0.0 1 1 1.3e-05 7.9e-05 11.5 0.0 11 32 5 26 2 31 0.88 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 68 HTH_23 PF13384.1 50 3e-06 15.9 0.1 1 1 7.5e-07 4.5e-06 15.3 0.1 18 40 4 26 1 26 0.91 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 68 HTH_28 PF13518.1 52 1.2e-05 14.3 0.0 1 1 3.1e-06 1.9e-05 13.7 0.0 13 35 4 26 2 29 0.92 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 68 HTH_24 PF13412.1 48 1.6e-05 13.3 0.3 1 1 3.7e-06 2.2e-05 12.8 0.3 16 39 2 25 2 26 0.95 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 68 HTH_31 PF13560.1 64 2.8e-05 13.3 0.1 1 1 5.7e-06 3.4e-05 13.0 0.1 13 37 2 26 2 51 0.85 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 68 MerR PF00376.18 38 4.3e-06 15.3 0.1 1 1 1.3e-06 7.9e-06 14.4 0.1 1 23 5 27 5 36 0.92 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 68 PaaX PF07848.7 70 4.3e-05 12.5 0.0 1 1 1.1e-05 6.8e-05 11.9 0.0 41 62 17 38 2 46 0.89 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 68 HTH_17 PF12728.2 51 1.3e-09 27.2 0.0 1 1 3e-10 1.8e-09 26.8 0.0 3 44 5 47 4 50 0.80 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 1_5 - 96 Zn-ribbon_8 PF09723.5 42 0.031 3.3 18.3 1 3 0.00039 0.0023 6.9 0.1 28 41 8 21 1 22 0.81 # 2300 # 2587 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.448 1_5 - 96 Zn-ribbon_8 PF09723.5 42 0.031 3.3 18.3 2 3 0.0016 0.0093 5.0 3.9 22 34 25 38 19 41 0.75 # 2300 # 2587 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.448 1_5 - 96 Zn-ribbon_8 PF09723.5 42 0.031 3.3 18.3 3 3 0.026 0.15 1.1 2.1 26 34 60 68 40 69 0.70 # 2300 # 2587 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.448 1_1 - 68 Phage_AlpA PF05930.7 51 4.2e-05 12.3 0.0 1 1 9.7e-06 5.8e-05 11.8 0.0 4 28 4 28 1 29 0.90 # 2 # 205 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.480 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7e1166bb-9bff-46a9-9700-2e1aafe077e7 # Target file: checkm_output/bins/pm578/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm578/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7e1166bb-9bff-46a9-9700-2e1aafe077e7 checkm_output/bins/pm578/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:09:22 2017 # [ok]