# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 234 Cons_hypoth95 PF03602.10 183 0.00025 13.2 0.0 1 2 0.00032 0.03 6.5 0.0 113 166 19 74 12 84 0.63 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_4 - 234 Cons_hypoth95 PF03602.10 183 0.00025 13.2 0.0 2 2 0.0011 0.1 4.7 0.0 41 60 169 188 157 225 0.73 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 4_1 - 106 HTH_IclR PF09339.5 52 4.1e-06 19.2 0.4 1 2 0.05 4.6 -0.2 0.1 7 18 29 40 27 58 0.70 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_1 - 106 HTH_IclR PF09339.5 52 4.1e-06 19.2 0.4 2 2 1.8e-07 1.7e-05 17.2 0.0 15 40 75 100 71 101 0.86 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_1 - 106 HTH_22 PF13309.1 64 0.00015 14.3 0.6 1 1 4.6e-06 0.00043 12.9 0.2 32 63 73 99 63 100 0.76 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_1 - 312 HHH_5 PF14520.1 60 0.00084 12.4 0.0 1 1 5.1e-05 0.0047 10.0 0.0 9 37 184 212 172 217 0.91 # 1 # 936 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_26 - 278 N6_Mtase PF02384.11 311 1.7e-12 39.7 0.0 1 1 3.5e-14 3.2e-12 38.9 0.0 25 117 139 237 132 265 0.85 # 16390 # 17223 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_45 - 880 FtsK_SpoIIIE PF01580.13 205 0.0001 14.6 0.0 1 1 2.7e-06 0.00025 13.3 0.0 39 63 480 506 466 508 0.85 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 4_1 - 106 HTH_40 PF14493.1 91 0.00017 14.6 0.6 1 2 0.044 4.1 0.6 0.0 49 74 33 59 23 70 0.69 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_1 - 106 HTH_40 PF14493.1 91 0.00017 14.6 0.6 2 2 7.8e-06 0.00073 12.6 0.1 7 33 72 98 66 103 0.89 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_1 - 106 HTH_38 PF13936.1 44 8.9e-07 21.3 1.4 1 1 4.3e-08 2e-06 20.1 0.0 9 41 67 99 65 102 0.93 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_13 - 207 HTH_38 PF13936.1 44 0.001 11.5 0.1 1 1 2.2e-05 0.001 11.5 0.1 13 39 172 199 164 202 0.82 # 13378 # 13998 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 2_13 - 207 SpoIIID PF12116.3 82 0.00079 12.2 1.5 1 3 0.011 1 2.2 0.1 34 71 109 147 102 159 0.77 # 13378 # 13998 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 2_13 - 207 SpoIIID PF12116.3 82 0.00079 12.2 1.5 2 3 0.088 8.2 -0.7 0.2 59 78 150 169 129 173 0.83 # 13378 # 13998 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 2_13 - 207 SpoIIID PF12116.3 82 0.00079 12.2 1.5 3 3 0.0002 0.018 7.8 0.1 18 38 179 199 167 203 0.85 # 13378 # 13998 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 2_9 - 93 HTH_39 PF14090.1 70 0.00043 12.6 0.0 1 1 7.7e-06 0.00072 11.9 0.0 5 36 7 38 5 50 0.88 # 10814 # 11092 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_65 - 1753 AAA_19 PF13245.1 76 1.5e-06 20.7 2.9 1 1 2e-08 1.8e-06 20.5 0.3 5 75 980 1047 975 1048 0.72 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 2_14 - 214 CbiA PF01656.18 195 5.9e-11 34.9 0.2 1 1 1.1e-12 1e-10 34.1 0.2 1 161 4 143 4 175 0.74 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_30 - 231 Sigma70_r4_2 PF08281.7 54 0.00024 13.4 0.0 1 2 8.7e-06 0.00081 11.7 0.0 19 51 157 188 155 191 0.82 # 19971 # 20663 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.346 1_30 - 231 Sigma70_r4_2 PF08281.7 54 0.00024 13.4 0.0 2 2 0.022 2.1 0.8 0.0 3 31 183 211 181 212 0.86 # 19971 # 20663 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.346 1_4 - 234 Methyltransf_26 PF13659.1 117 2.6e-10 33.2 0.2 1 2 2.1e-07 9.9e-06 18.4 0.0 63 114 13 71 3 74 0.73 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_4 - 234 Methyltransf_26 PF13659.1 117 2.6e-10 33.2 0.2 2 2 1.3e-05 0.00058 12.7 0.1 4 46 174 215 171 228 0.83 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_26 - 278 Methyltransf_26 PF13659.1 117 4.2e-05 16.4 0.2 1 1 2.8e-06 0.00013 14.8 0.1 3 68 171 241 170 271 0.83 # 16390 # 17223 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_65 - 1753 AAA_30 PF13604.1 196 8e-46 148.9 8.7 1 2 1.5e-06 0.00014 14.3 1.7 9 126 423 535 421 559 0.86 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_65 - 1753 AAA_30 PF13604.1 196 8e-46 148.9 8.7 2 2 3.8e-44 3.6e-42 136.9 0.8 2 186 970 1157 969 1161 0.94 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_30 - 231 GerE PF00196.14 58 0.00012 14.2 0.0 1 1 5.1e-06 0.00024 13.3 0.0 11 51 156 196 153 202 0.89 # 19971 # 20663 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.346 4_1 - 106 GerE PF00196.14 58 0.00035 12.7 0.1 1 1 1.4e-05 0.00066 11.8 0.1 11 35 71 95 69 98 0.93 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_64 - 771 TraG-D_C PF12696.2 128 6.5e-20 64.1 0.0 1 1 1.6e-21 1.4e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 2_14 - 214 MipZ PF09140.6 261 1.3e-07 23.7 3.9 1 2 0.00026 0.024 6.4 0.4 5 23 6 24 2 37 0.75 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 2_14 - 214 MipZ PF09140.6 261 1.3e-07 23.7 3.9 2 2 4.9e-08 4.6e-06 18.6 0.1 82 133 57 108 26 125 0.83 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_4 - 234 UPF0020 PF01170.13 180 6e-05 15.5 0.0 1 2 3.5e-05 0.0033 9.8 0.0 103 123 17 37 5 85 0.75 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_4 - 234 UPF0020 PF01170.13 180 6e-05 15.5 0.0 2 2 0.0026 0.24 3.7 0.0 28 44 170 186 165 227 0.77 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_15 - 667 KorB PF08535.5 93 7.3e-05 15.7 0.2 1 1 4.3e-06 0.0004 13.4 0.0 1 45 152 195 152 233 0.87 # 8650 # 10650 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.617 1_4 - 234 N6_N4_Mtase PF01555.13 231 1.2e-31 102.7 0.0 1 2 1.3e-14 1.2e-12 40.6 0.0 1 113 21 130 21 140 0.87 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_4 - 234 N6_N4_Mtase PF01555.13 231 1.2e-31 102.7 0.0 2 2 1.2e-20 1.1e-18 60.3 0.0 171 227 150 206 138 210 0.93 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_64 - 771 AAA_16 PF13191.1 185 5.1e-06 19.4 0.0 1 1 2.6e-07 2.4e-05 17.2 0.0 21 56 182 218 179 253 0.78 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_65 - 1753 AAA_22 PF13401.1 131 0.00034 13.6 0.1 1 2 0.0053 0.49 3.4 0.0 88 121 499 535 463 537 0.71 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_65 - 1753 AAA_22 PF13401.1 131 0.00034 13.6 0.1 2 2 0.0009 0.084 5.8 0.0 5 28 987 1010 983 1062 0.79 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_21 - 292 Methyltransf_27 PF13708.1 194 5.3e-63 204.8 0.0 1 1 7e-65 6.5e-63 204.5 0.0 6 194 96 287 91 287 0.94 # 13584 # 14459 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 2_7 - 233 OST-HTH PF12872.2 74 2.1e-18 58.8 0.1 1 1 3.7e-20 3.5e-18 58.1 0.1 2 67 156 220 155 229 0.87 # 9052 # 9750 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 4_1 - 106 HTH_Tnp_IS630 PF01710.11 120 3.7e-05 16.2 0.0 1 1 6.6e-07 6.1e-05 15.5 0.0 8 44 68 104 63 105 0.91 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_1 - 106 HTH_23 PF13384.1 50 8.1e-06 18.3 2.1 1 1 4.2e-07 1.3e-05 17.6 0.2 5 39 66 100 62 104 0.87 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_15 - 667 HTH_23 PF13384.1 50 1.4e-05 17.5 0.1 1 1 4.2e-06 0.00013 14.4 0.0 14 40 151 177 147 183 0.88 # 8650 # 10650 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.617 2_13 - 207 HTH_23 PF13384.1 50 1.6e-05 17.4 0.2 1 1 1.5e-06 4.5e-05 15.9 0.2 10 37 171 200 163 204 0.77 # 13378 # 13998 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_64 - 771 zf-DHHC PF01529.15 174 0.0071 8.5 3.7 1 1 0.00014 0.013 7.7 3.7 90 154 27 130 25 147 0.78 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 4_1 - 106 HTH_7 PF02796.10 45 6.8e-14 44.4 0.6 1 1 1.7e-15 1.6e-13 43.2 0.1 1 44 61 101 61 102 0.97 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_1 - 106 HTH_29 PF13551.1 112 3.2e-05 16.9 0.9 1 2 0.013 1.2 2.2 0.3 24 54 34 63 18 70 0.64 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_1 - 106 HTH_29 PF13551.1 112 3.2e-05 16.9 0.9 2 2 3.4e-06 0.00031 13.7 0.0 4 35 71 101 68 105 0.90 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_64 - 771 TrwB_AAD_bind PF10412.4 386 3.6e-148 486.0 0.0 1 1 9.5e-150 4.4e-148 485.7 0.0 2 385 172 560 171 561 0.99 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_45 - 880 TrwB_AAD_bind PF10412.4 386 1.4e-05 16.6 0.2 1 1 8e-07 3.7e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_14 - 214 TIGR01968 TIGR01968 261 8.4e-05 14.5 0.3 1 2 5.4e-06 0.0005 11.9 0.1 7 42 7 39 2 47 0.71 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 2_14 - 214 TIGR01968 TIGR01968 261 8.4e-05 14.5 0.3 2 2 0.021 1.9 0.2 0.0 104 140 66 102 54 132 0.72 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 1_1 - 312 IMS_HHH PF11798.3 32 2.3e-06 20.4 0.1 1 1 7.1e-08 6.6e-06 18.9 0.1 5 32 174 201 170 201 0.89 # 1 # 936 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_13 - 207 HTH_Tnp_IS1 PF12759.2 46 0.00071 11.8 0.1 1 1 1.5e-05 0.0014 10.9 0.1 19 41 178 200 168 204 0.88 # 13378 # 13998 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_45 - 880 DUF87 PF01935.12 229 4.2e-06 19.5 0.0 1 2 0.091 8.5 -1.1 0.2 114 170 313 364 304 395 0.60 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_45 - 880 DUF87 PF01935.12 229 4.2e-06 19.5 0.0 2 2 2.2e-07 2e-05 17.3 0.0 26 222 484 674 479 681 0.82 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 4_1 - 106 HTH_28 PF13518.1 52 6e-05 15.9 0.0 1 1 1.6e-06 0.00015 14.6 0.0 8 33 74 99 68 104 0.82 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_4 - 234 TIGR03534 TIGR03534 253 0.00063 11.7 0.0 1 1 3e-05 0.0028 9.6 0.0 146 168 11 32 2 108 0.72 # 2234 # 2935 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 2_3 - 85 Homez PF11569.3 57 0.00035 12.5 0.1 1 1 7e-06 0.00065 11.6 0.1 29 46 56 73 51 83 0.78 # 3704 # 3958 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.427 2_13 - 207 HTH_31 PF13560.1 64 0.00051 13.1 0.1 1 1 5.5e-06 0.00051 13.1 0.1 5 35 171 201 170 205 0.90 # 13378 # 13998 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 1753 UvrD_C_2 PF13538.1 104 7.2e-08 25.4 0.2 1 1 5.1e-09 4.7e-07 22.8 0.1 3 102 1339 1442 1335 1444 0.76 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_45 - 880 Pox_A32 PF04665.7 241 7e-05 15.0 0.0 1 1 1.5e-06 0.00014 14.0 0.0 6 40 474 508 470 523 0.82 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 2_14 - 214 VirC1 PF07015.6 231 0.00068 11.5 0.0 1 2 0.00069 0.065 5.1 0.0 1 29 1 29 1 36 0.83 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 2_14 - 214 VirC1 PF07015.6 231 0.00068 11.5 0.0 2 2 0.00092 0.086 4.6 0.0 89 190 79 181 59 208 0.72 # 15035 # 15676 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450 2_6 - 332 Transposase_20 PF02371.11 87 2.5e-20 65.2 0.0 1 1 4.5e-22 4.2e-20 64.5 0.0 2 87 201 286 200 286 0.96 # 7328 # 8323 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 4_1 - 106 CENP-B_N PF04218.8 53 0.00035 12.8 0.1 1 1 2.3e-05 0.0021 10.3 0.1 26 47 82 103 67 104 0.86 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_64 - 771 T4SS-DNA_transf PF02534.9 469 9.1e-09 27.1 0.0 1 2 0.035 3.3 -1.1 0.0 128 199 260 330 249 356 0.72 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_64 - 771 T4SS-DNA_transf PF02534.9 469 9.1e-09 27.1 0.0 2 2 3.5e-10 3.2e-08 25.3 0.0 278 393 396 507 364 559 0.74 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 4_1 - 106 HTH_26 PF13443.1 63 0.00059 12.9 0.0 1 1 1.1e-05 0.00098 12.2 0.0 6 34 74 102 70 105 0.90 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_5 - 212 DUF2268 PF10026.4 195 1.7e-38 124.7 0.0 1 1 2.2e-40 2e-38 124.5 0.0 5 193 26 207 22 209 0.93 # 6557 # 7192 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.447 4_1 - 106 HTH_17 PF12728.2 51 0.00072 12.6 1.0 1 2 0.014 1.3 2.3 0.1 25 43 53 71 39 74 0.80 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_1 - 106 HTH_17 PF12728.2 51 0.00072 12.6 1.0 2 2 0.00011 0.01 9.0 0.1 6 23 83 100 81 103 0.87 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_1 - 106 TrmB PF01978.14 68 2.3e-05 16.9 0.0 1 1 4.3e-07 4e-05 16.1 0.0 19 44 75 100 69 101 0.89 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_13 - 207 LacI PF00356.16 46 2.9e-06 19.7 0.2 1 1 9.9e-08 9.2e-06 18.1 0.2 2 20 183 201 182 206 0.86 # 13378 # 13998 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_45 - 880 AAA_10 PF12846.2 304 9.1e-46 149.4 0.0 1 1 3.1e-47 1.4e-45 148.7 0.0 1 294 481 773 481 779 0.85 # 28286 # 30925 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_64 - 771 AAA_10 PF12846.2 304 2e-09 30.1 0.0 1 2 1e-05 0.00048 12.4 0.0 3 43 187 227 186 256 0.92 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 1_64 - 771 AAA_10 PF12846.2 304 2e-09 30.1 0.0 2 2 1.1e-06 5.3e-05 15.5 0.0 201 296 398 494 284 499 0.85 # 44907 # 47219 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.571 4_1 - 106 HTH_20 PF12840.2 61 1.7e-05 17.4 0.1 1 1 2.1e-06 0.00019 14.0 0.1 2 43 29 97 28 101 0.93 # 202 # 519 # -1 # ID=4_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_65 - 1753 AAA_11 PF13086.1 236 6.5e-07 21.9 0.2 1 3 6.8e-06 0.00064 12.1 0.0 2 75 970 1040 969 1060 0.76 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_65 - 1753 AAA_11 PF13086.1 236 6.5e-07 21.9 0.2 2 3 0.0013 0.12 4.7 0.0 194 231 1066 1106 1042 1108 0.73 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_65 - 1753 AAA_11 PF13086.1 236 6.5e-07 21.9 0.2 3 3 0.021 2 0.7 0.0 2 35 1180 1212 1179 1336 0.70 # 47219 # 52477 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.620 1_13 - 186 SSB PF00436.20 104 3.4e-41 132.2 0.2 1 1 4.5e-43 4.2e-41 131.9 0.2 1 99 6 105 6 113 0.95 # 7724 # 8281 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.625 2_11 - 318 Glyco_trans_4_3 PF12000.3 171 3.8e-06 19.4 0.0 1 2 0.00046 0.043 6.2 0.0 14 84 112 182 95 188 0.77 # 12018 # 12971 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 2_11 - 318 Glyco_trans_4_3 PF12000.3 171 3.8e-06 19.4 0.0 2 2 1.7e-05 0.0016 10.9 0.0 19 65 209 256 200 260 0.90 # 12018 # 12971 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/8134fd36-68b3-433e-853f-e3192e72c855 # Target file: checkm_output/bins/pm574/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm574/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8134fd36-68b3-433e-853f-e3192e72c855 checkm_output/bins/pm574/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:09:24 2017 # [ok]