# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 298 HTH_DeoR PF08220.7 57 1.4e-05 13.0 0.0 1 2 0.012 0.047 1.8 0.0 11 37 102 127 99 132 0.77 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_DeoR PF08220.7 57 1.4e-05 13.0 0.0 2 2 8.7e-05 0.00035 8.6 0.0 16 33 263 280 261 285 0.92 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_38 PF13936.1 44 3.9e-06 14.8 0.0 1 2 0.016 0.063 1.4 0.0 14 35 99 120 95 121 0.88 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_38 PF13936.1 44 3.9e-06 14.8 0.0 2 2 2e-05 8.1e-05 10.6 0.0 9 40 250 281 247 283 0.90 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 Sigma70_r4_2 PF08281.7 54 4.3e-09 24.2 0.1 1 2 0.0039 0.016 3.2 0.0 23 42 102 121 97 124 0.84 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 Sigma70_r4_2 PF08281.7 54 4.3e-09 24.2 0.1 2 2 7.2e-08 2.9e-07 18.4 0.0 14 47 250 282 248 283 0.94 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 Terminase_5 PF06056.7 58 1.1e-06 16.6 0.0 1 1 7.6e-07 3.1e-06 15.2 0.0 1 36 249 284 249 289 0.92 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_Tnp_1 PF01527.15 76 1.1e-05 13.8 0.1 1 1 9.2e-06 3.7e-05 12.1 0.1 9 45 248 283 241 292 0.87 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 GerE PF00196.14 58 2.5e-07 18.4 0.0 1 2 0.00062 0.0025 5.6 0.0 8 32 95 119 94 121 0.95 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 GerE PF00196.14 58 2.5e-07 18.4 0.0 2 2 2.2e-05 8.8e-05 10.3 0.0 11 36 254 279 248 284 0.86 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 Sigma70_r4 PF04545.11 50 7.6e-07 16.9 0.0 1 2 5e-05 0.0002 9.1 0.0 9 39 95 124 94 128 0.77 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 Sigma70_r4 PF04545.11 50 7.6e-07 16.9 0.0 2 2 0.00072 0.0029 5.4 0.0 10 39 252 280 248 284 0.79 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_23 PF13384.1 50 3.2e-11 31.1 0.4 1 1 4.8e-11 1.9e-10 28.6 0.0 4 38 248 282 245 286 0.93 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_29 PF13551.1 112 1.4e-05 13.7 2.0 1 1 1.6e-05 6.2e-05 11.6 0.1 1 34 251 283 251 288 0.84 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_28 PF13518.1 52 1.2e-07 20.1 1.0 1 1 5.8e-08 2.3e-07 19.2 0.1 1 34 250 283 250 288 0.93 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_31 PF13560.1 64 7.2e-05 11.4 1.8 1 2 0.063 0.25 0.1 0.1 10 29 102 120 97 125 0.65 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_31 PF13560.1 64 7.2e-05 11.4 1.8 2 2 5.2e-05 0.00021 9.9 0.2 10 35 251 282 214 288 0.89 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_Tnp_ISL3 PF13542.1 52 1.4e-05 12.7 0.5 1 1 1.3e-05 5.1e-05 10.9 0.3 28 49 262 283 251 285 0.84 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_17 PF12728.2 51 3.3e-08 22.2 0.3 1 3 0.00071 0.0029 6.4 0.0 2 16 106 120 105 125 0.91 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_17 PF12728.2 51 3.3e-08 22.2 0.3 2 3 0.047 0.19 0.5 0.0 13 25 140 152 135 156 0.84 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_17 PF12728.2 51 3.3e-08 22.2 0.3 3 3 2.6e-05 0.00011 10.9 0.0 3 24 263 284 262 294 0.90 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_11 PF08279.7 55 3.8e-06 15.0 0.1 1 2 0.0016 0.0063 4.6 0.0 15 30 104 120 96 127 0.80 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 HTH_11 PF08279.7 55 3.8e-06 15.0 0.1 2 2 0.00019 0.00075 7.6 0.0 17 34 263 280 260 284 0.89 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 Sigma70_ECF PF07638.6 185 1e-05 13.7 0.2 1 2 0.03 0.12 0.3 0.0 151 174 105 131 95 142 0.73 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_1 - 298 Sigma70_ECF PF07638.6 185 1e-05 13.7 0.2 2 2 1.7e-05 6.8e-05 10.9 0.1 134 181 245 291 221 294 0.80 # 3 # 896 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/2f439757-aa2b-4698-a6a3-31029fff0314 # Target file: checkm_output/bins/pm571/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm571/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2f439757-aa2b-4698-a6a3-31029fff0314 checkm_output/bins/pm571/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:09:22 2017 # [ok]