# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 74 HTH_IclR PF09339.5 52 4e-06 14.4 0.0 1 1 4.9e-06 1.5e-05 12.6 0.0 22 46 4 28 2 30 0.90 # 1228 # 1449 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_3 - 74 MarR PF01047.17 59 5.4e-07 17.3 0.1 1 1 3.4e-07 1e-06 16.5 0.0 20 47 3 30 1 30 0.90 # 1228 # 1449 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_3 - 74 HTH_27 PF13463.1 68 4.9e-09 24.5 0.0 1 1 2.2e-09 6.6e-09 24.1 0.0 21 64 3 44 1 46 0.94 # 1228 # 1449 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_3 - 74 HTH_24 PF13412.1 48 1.6e-07 18.7 0.0 1 1 8.2e-08 2.5e-07 18.1 0.0 18 47 1 30 1 30 0.95 # 1228 # 1449 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_3 - 74 MarR_2 PF12802.2 62 4e-08 20.9 0.0 1 1 1.7e-08 5e-08 20.6 0.0 23 52 2 31 1 45 0.88 # 1228 # 1449 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_3 - 74 TrmB PF01978.14 68 3.5e-07 17.9 0.0 1 2 3.5e-07 1e-06 16.4 0.0 26 62 4 42 2 47 0.82 # 1228 # 1449 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_3 - 74 TrmB PF01978.14 68 3.5e-07 17.9 0.0 2 2 0.021 0.062 1.1 0.0 33 56 35 58 30 64 0.79 # 1228 # 1449 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_3 - 74 HTH_Crp_2 PF13545.1 76 2.3e-06 15.4 0.0 1 1 9.3e-07 2.8e-06 15.1 0.0 31 58 3 30 1 44 0.90 # 1228 # 1449 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_3 - 74 HTH_20 PF12840.2 61 3e-06 15.0 0.0 1 1 1.8e-06 5.4e-06 14.2 0.0 29 54 5 30 4 34 0.95 # 1228 # 1449 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_3 - 74 RPA_C PF08784.6 102 1.7e-05 13.2 0.0 1 1 1e-05 3e-05 12.5 0.0 70 96 5 31 1 33 0.92 # 1228 # 1449 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/30f639e6-22bd-4d20-b136-eb1c9b83c4f7 # Target file: checkm_output/bins/pm564/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm564/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/30f639e6-22bd-4d20-b136-eb1c9b83c4f7 checkm_output/bins/pm564/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:09:03 2017 # [ok]