# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 138 HTH_IclR PF09339.5 52 8.9e-05 11.5 0.0 1 1 1.8e-05 0.00014 10.8 0.0 15 39 108 132 103 134 0.86 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_38 PF13936.1 44 8.6e-10 27.5 0.0 1 1 3.8e-10 3e-09 25.8 0.0 15 43 106 134 103 135 0.92 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 Sigma70_r4_2 PF08281.7 54 6e-08 21.5 0.0 1 1 1.2e-08 9.6e-08 20.9 0.0 18 49 104 134 103 136 0.90 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 Fe_dep_repress PF01325.14 60 3.6e-05 13.1 0.0 1 1 9.6e-06 7.7e-05 12.0 0.0 24 45 113 134 99 134 0.87 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 Terminase_5 PF06056.7 58 2.7e-07 19.5 0.1 1 1 1.1e-07 9.1e-07 17.8 0.0 12 38 110 136 106 136 0.95 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 GerE PF00196.14 58 2.1e-12 35.6 0.0 1 1 4.5e-13 3.6e-12 34.9 0.0 10 41 103 134 102 134 0.96 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 Phage_CI_repr PF07022.8 66 5.8e-05 12.6 0.0 1 1 1.2e-05 9.8e-05 11.8 0.0 8 38 108 136 106 137 0.90 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_3 PF01381.17 55 7.4e-07 18.4 0.0 1 1 1.5e-07 1.2e-06 17.7 0.0 5 31 107 133 105 137 0.86 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_23 PF13384.1 50 4.2e-10 28.5 0.1 1 1 1.4e-10 1.2e-09 27.1 0.0 10 40 104 134 103 136 0.95 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_7 PF02796.10 45 3.6e-08 22.6 0.0 1 1 8.3e-09 6.6e-08 21.8 0.0 1 38 88 128 88 133 0.91 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_19 PF12844.2 64 6.2e-06 15.7 0.0 1 1 1.6e-06 1.3e-05 14.7 0.0 9 33 108 132 105 136 0.90 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_29 PF13551.1 112 3.9e-06 16.4 0.4 1 2 0.018 0.14 1.7 0.1 72 105 42 70 26 77 0.74 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_29 PF13551.1 112 3.9e-06 16.4 0.4 2 2 1.4e-05 0.00011 11.7 0.0 4 35 104 134 102 136 0.92 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_28 PF13518.1 52 2.7e-06 16.8 0.0 1 1 1e-06 8.1e-06 15.2 0.0 4 35 103 134 103 134 0.92 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_24 PF13412.1 48 2.3e-07 19.6 0.0 1 1 4.6e-08 3.6e-07 18.9 0.0 17 40 111 134 103 134 0.89 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_10 PF04967.7 53 7.8e-06 14.9 0.0 1 2 0.054 0.44 -0.3 0.0 8 21 10 23 4 24 0.80 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_10 PF04967.7 53 7.8e-06 14.9 0.0 2 2 7.6e-06 6.1e-05 12.0 0.0 25 46 113 134 109 135 0.90 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 MarR_2 PF12802.2 62 1.2e-05 14.4 0.0 1 1 2.7e-06 2.2e-05 13.5 0.0 21 44 111 134 96 134 0.82 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 HTH_5 PF01022.15 47 3.7e-07 19.2 0.0 1 1 7.6e-08 6.1e-07 18.5 0.0 16 37 112 133 104 134 0.88 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 Phage_terminase PF10668.4 60 3e-05 13.2 0.0 1 2 0.057 0.46 -0.2 0.0 30 43 47 60 44 67 0.62 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_1 - 138 Phage_terminase PF10668.4 60 3e-05 13.2 0.0 2 2 2.3e-05 0.00018 10.7 0.0 24 41 113 130 107 136 0.85 # 2 # 415 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/53edb01f-4552-4929-86cb-0ee104a73de7 # Target file: checkm_output/bins/pm555/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm555/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/53edb01f-4552-4929-86cb-0ee104a73de7 checkm_output/bins/pm555/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:08:55 2017 # [ok]