# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_97 - 455 KaiC PF06745.8 227 1.4e-06 20.7 0.0 1 1 2.9e-08 3.5e-06 19.4 0.0 4 66 185 253 183 277 0.87 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_17 - 191 TIGR01173 TIGR01173 452 5.3e-07 21.6 0.9 1 1 7.3e-09 8.6e-07 20.9 0.6 390 438 134 183 90 188 0.85 # 16510 # 17082 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_36 - 288 N6_Mtase PF02384.11 311 1e-10 34.3 0.0 1 1 2.5e-11 2.9e-09 29.5 0.0 93 240 145 282 67 284 0.73 # 33566 # 34429 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.524 1_97 - 455 FtsK_SpoIIIE PF01580.13 205 0.00037 13.1 0.2 1 2 8.6e-05 0.01 8.4 0.0 40 66 208 234 184 242 0.82 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_97 - 455 FtsK_SpoIIIE PF01580.13 205 0.00037 13.1 0.2 2 2 0.012 1.4 1.4 0.1 71 124 319 366 313 400 0.74 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_37 - 1315 Helicase_C PF00271.26 78 1.8e-09 30.5 0.3 1 1 7e-11 8.3e-09 28.4 0.0 16 78 1169 1232 1150 1232 0.85 # 34422 # 38366 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.529 1_110 - 334 HTH_38 PF13936.1 44 8.4e-05 15.3 0.3 1 2 0.052 6.2 -0.3 0.0 19 30 147 158 130 160 0.75 # 90035 # 91036 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.441 1_110 - 334 HTH_38 PF13936.1 44 8.4e-05 15.3 0.3 2 2 3.6e-06 0.00043 13.0 0.3 12 34 157 179 151 187 0.86 # 90035 # 91036 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.441 1_98 - 276 TIGR01932 TIGR01932 318 5.6e-08 24.7 2.5 1 1 6.8e-10 8e-08 24.2 2.5 145 268 115 239 97 243 0.84 # 76747 # 77574 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_98 - 276 TIGR01933 TIGR01933 261 2.4e-07 23.2 0.9 1 1 2.5e-09 3e-07 22.9 0.9 76 201 105 233 52 243 0.73 # 76747 # 77574 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_110 - 334 MarR PF01047.17 59 0.00069 12.5 0.0 1 1 1.5e-05 0.0017 11.2 0.0 15 38 163 186 157 188 0.92 # 90035 # 91036 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.441 1_97 - 455 AAA_19 PF13245.1 76 0.001 12.0 0.0 1 1 2.5e-05 0.0029 10.5 0.0 10 48 206 241 199 264 0.82 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_109 - 399 CbiA PF01656.18 195 1.2e-20 66.8 0.0 1 1 1.8e-22 2.2e-20 66.0 0.0 1 144 111 294 111 322 0.75 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_101 - 1096 MethyltransfD12 PF02086.10 260 3.6e-56 183.6 0.0 1 1 4.8e-58 5.6e-56 182.9 0.0 1 245 834 1063 834 1076 0.94 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_110 - 334 Sigma70_r4_2 PF08281.7 54 0.00021 13.9 0.1 1 1 5e-06 0.00059 12.5 0.1 25 50 164 189 158 191 0.91 # 90035 # 91036 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.441 1_107 - 295 Rep_3 PF01051.16 222 1.5e-20 66.8 0.3 1 1 1.7e-22 2e-20 66.4 0.3 6 215 26 285 22 290 0.89 # 86667 # 87551 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.450 1_77 - 89 zf-ribbon_3 PF13248.1 26 0.00013 14.3 0.2 1 1 1.9e-06 0.00023 13.6 0.2 17 26 67 76 57 76 0.87 # 60673 # 60939 # -1 # ID=1_77;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.446 1_96 - 333 Glyco_trans_1_2 PF13524.1 92 0.00013 15.4 0.0 1 1 4.4e-06 0.00052 13.5 0.0 6 66 245 306 230 322 0.72 # 74001 # 74999 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_36 - 288 Methyltransf_26 PF13659.1 117 2.5e-10 33.6 0.0 1 1 9.4e-12 5.6e-10 32.5 0.0 5 116 116 225 72 226 0.83 # 33566 # 34429 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.524 1_101 - 1096 Methyltransf_26 PF13659.1 117 2.2e-05 17.6 0.0 1 1 9e-07 5.3e-05 16.4 0.0 1 83 852 1011 852 1061 0.69 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_51 - 495 AAA_30 PF13604.1 196 4.4e-05 16.3 0.0 1 1 3.7e-06 0.00044 13.0 0.0 5 127 37 189 35 194 0.70 # 47245 # 48729 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_83 - 226 TIGR00668 TIGR00668 279 6.3e-17 54.7 0.1 1 2 1.3e-17 1.5e-15 50.2 0.1 4 71 19 84 16 144 0.92 # 64550 # 65227 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 1_83 - 226 TIGR00668 TIGR00668 279 6.3e-17 54.7 0.1 2 2 0.004 0.47 2.6 0.0 216 257 178 218 170 222 0.75 # 64550 # 65227 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 1_109 - 399 MipZ PF09140.6 261 7.2e-09 28.2 0.1 1 2 4.6e-05 0.0054 8.9 0.0 1 51 109 164 109 187 0.77 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_109 - 399 MipZ PF09140.6 261 7.2e-09 28.2 0.1 2 2 1.4e-07 1.7e-05 17.2 0.0 82 135 228 281 213 289 0.86 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_101 - 1096 UPF0020 PF01170.13 180 0.00022 13.9 0.0 1 2 0.0046 0.54 2.9 0.0 28 50 851 873 848 910 0.87 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_101 - 1096 UPF0020 PF01170.13 180 0.00022 13.9 0.0 2 2 0.00012 0.015 8.0 0.0 86 116 978 1008 973 1014 0.91 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_22 - 640 DivIC PF04977.10 80 0.0035 10.0 13.1 1 2 0.016 1.9 1.3 4.1 17 56 205 244 196 250 0.62 # 19198 # 21117 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_22 - 640 DivIC PF04977.10 80 0.0035 10.0 13.1 2 2 4.9e-06 0.00058 12.5 2.2 20 55 250 287 246 290 0.85 # 19198 # 21117 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_110 - 334 Trp_repressor PF01371.14 88 0.0003 13.8 0.5 1 1 7.4e-06 0.00087 12.4 0.1 40 69 157 185 124 194 0.84 # 90035 # 91036 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.441 1_110 - 334 KorB PF08535.5 93 4.5e-05 16.7 0.0 1 1 3.8e-06 0.00045 13.6 0.0 2 38 164 200 163 213 0.91 # 90035 # 91036 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.441 1_36 - 288 Eco57I PF07669.6 106 5.3e-06 19.9 0.0 1 1 7.8e-08 9.2e-06 19.2 0.0 3 101 174 271 172 276 0.88 # 33566 # 34429 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.524 1_96 - 333 Glyco_trans_1_4 PF13692.1 135 2.6e-06 20.8 0.1 1 2 0.08 9.5 -0.5 0.0 84 132 22 69 9 72 0.65 # 74001 # 74999 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_96 - 333 Glyco_trans_1_4 PF13692.1 135 2.6e-06 20.8 0.1 2 2 1.2e-07 1.5e-05 18.4 0.0 54 105 216 271 193 318 0.76 # 74001 # 74999 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_1 - 144 HTH_AraC PF00165.18 42 5.4e-05 16.2 0.0 1 1 1.6e-06 0.00018 14.5 0.0 14 37 50 73 50 76 0.91 # 3 # 434 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.461 1_13 - 279 HI0933_like PF03486.9 409 0.0012 10.4 0.0 1 1 1.5e-05 0.0018 9.9 0.0 60 124 27 90 19 109 0.80 # 11678 # 12514 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_52 - 398 HTH_23 PF13384.1 50 1.3e-06 21.1 3.8 1 2 1.1e-07 6.4e-06 18.9 0.0 10 43 10 44 3 51 0.88 # 48729 # 49922 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_52 - 398 HTH_23 PF13384.1 50 1.3e-06 21.1 3.8 2 2 0.029 1.7 1.6 0.1 32 45 232 245 231 250 0.82 # 48729 # 49922 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_110 - 334 HTH_23 PF13384.1 50 0.00023 14.0 0.0 1 1 1.4e-05 0.00085 12.2 0.0 9 45 157 191 156 196 0.84 # 90035 # 91036 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.441 1_73 - 120 Ribosomal_S27e PF01667.12 55 0.00014 14.6 0.0 1 1 1.9e-06 0.00022 13.9 0.0 11 39 36 63 34 73 0.85 # 58672 # 59031 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.428 1_52 - 398 HTH_29 PF13551.1 112 2e-06 21.1 0.4 1 2 1.6e-07 1.9e-05 18.0 0.1 5 90 11 83 7 113 0.75 # 48729 # 49922 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_52 - 398 HTH_29 PF13551.1 112 2e-06 21.1 0.4 2 2 0.07 8.3 -0.2 0.0 34 87 239 279 212 290 0.52 # 48729 # 49922 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_37 - 1315 ResIII PF04851.10 184 2.1e-05 17.6 0.0 1 2 2.8e-05 0.0033 10.4 0.0 5 75 549 616 513 636 0.76 # 34422 # 38366 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.529 1_37 - 1315 ResIII PF04851.10 184 2.1e-05 17.6 0.0 2 2 0.0025 0.29 4.0 0.0 137 182 746 823 689 825 0.67 # 34422 # 38366 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.529 1_37 - 1315 SNF2_N PF00176.18 299 6.7e-18 57.6 0.0 1 1 1.5e-19 1.8e-17 56.1 0.0 27 293 564 977 551 983 0.85 # 34422 # 38366 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.529 1_109 - 399 TIGR01968 TIGR01968 261 1.3e-06 20.7 0.0 1 2 0.00036 0.042 6.0 0.0 3 28 110 135 108 153 0.78 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_109 - 399 TIGR01968 TIGR01968 261 1.3e-06 20.7 0.0 2 2 5.7e-06 0.00067 11.8 0.0 102 135 235 268 225 280 0.88 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_99 - 79 TIGR02209 TIGR02209 85 0.00052 12.8 0.1 1 2 0.042 5 0.0 1.8 4 21 15 32 13 39 0.75 # 77555 # 77791 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_99 - 79 TIGR02209 TIGR02209 85 0.00052 12.8 0.1 2 2 4.4e-06 0.00052 12.8 0.1 3 33 45 75 43 76 0.89 # 77555 # 77791 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_96 - 333 Glycos_transf_1 PF00534.15 172 1e-07 24.6 0.0 1 1 1.5e-09 1.7e-07 23.9 0.0 85 159 231 304 226 318 0.83 # 74001 # 74999 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.489 1_28 - 226 EFP PF01132.15 55 0.00057 12.7 0.0 1 1 1e-05 0.0012 11.7 0.0 23 53 133 163 133 164 0.90 # 26685 # 27362 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_52 - 398 HTH_28 PF13518.1 52 1.5e-08 27.7 0.2 1 2 1.2e-08 1.5e-06 21.3 0.0 2 39 7 45 6 59 0.88 # 48729 # 49922 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_52 - 398 HTH_28 PF13518.1 52 1.5e-08 27.7 0.2 2 2 0.0083 0.97 2.7 0.0 27 45 232 250 229 254 0.87 # 48729 # 49922 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_97 - 455 DnaB_C PF03796.10 259 1.6e-109 357.8 0.3 1 1 2e-111 2.4e-109 357.3 0.3 1 257 188 445 188 447 0.98 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_99 - 79 FtsL PF04999.8 97 0.00011 15.1 2.6 1 2 0.041 4.8 0.2 0.7 14 32 14 32 6 37 0.72 # 77555 # 77791 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_99 - 79 FtsL PF04999.8 97 0.00011 15.1 2.6 2 2 9.9e-07 0.00012 15.0 0.1 12 44 40 75 33 77 0.76 # 77555 # 77791 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.401 1_110 - 334 HTH_24 PF13412.1 48 1.6e-07 23.9 0.5 1 2 4.3e-08 2.5e-06 20.0 0.0 14 39 162 187 158 190 0.93 # 90035 # 91036 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.441 1_110 - 334 HTH_24 PF13412.1 48 1.6e-07 23.9 0.5 2 2 0.035 2.1 1.1 0.1 2 17 250 265 249 268 0.83 # 90035 # 91036 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.441 1_52 - 398 HTH_24 PF13412.1 48 3.5e-05 16.3 0.0 1 1 1.6e-06 9.7e-05 14.9 0.0 12 44 13 45 11 45 0.94 # 48729 # 49922 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_22 - 640 Kinesin-relat_1 PF12711.2 86 0.0022 11.5 4.6 1 2 0.004 0.48 4.1 0.5 8 42 196 230 191 236 0.81 # 19198 # 21117 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_22 - 640 Kinesin-relat_1 PF12711.2 86 0.0022 11.5 4.6 2 2 0.00024 0.029 8.0 0.3 7 37 251 281 246 284 0.90 # 19198 # 21117 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_24 - 988 DUF2250 PF10007.4 93 0.00086 12.4 0.1 1 1 9.6e-05 0.011 8.8 0.0 7 76 271 340 266 342 0.94 # 21516 # 24479 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_51 - 495 Terminase_6 PF03237.10 384 2.1e-06 19.8 0.1 1 1 3.9e-08 4.6e-06 18.7 0.1 6 317 58 380 55 426 0.74 # 47245 # 48729 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_118 - 120 THF_DHG_CYH PF00763.18 117 0.00055 13.1 0.1 1 1 7.9e-06 0.00094 12.4 0.1 44 91 66 113 10 114 0.92 # 97329 # 97688 # -1 # ID=1_118;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 1_97 - 455 AAA_25 PF13481.1 194 9.4e-15 47.6 0.1 1 1 1.5e-16 1.8e-14 46.7 0.1 14 190 188 368 174 372 0.82 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_97 - 455 AAA_33 PF13671.1 143 0.00023 14.2 0.2 1 3 0.088 10 -0.9 0.0 46 79 134 172 102 181 0.69 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_97 - 455 AAA_33 PF13671.1 143 0.00023 14.2 0.2 2 3 3.9e-05 0.0047 10.0 0.0 2 42 209 248 208 327 0.60 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_97 - 455 AAA_33 PF13671.1 143 0.00023 14.2 0.2 3 3 0.036 4.2 0.4 0.1 88 123 350 383 331 394 0.72 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_101 - 1096 DNA_methylase PF00145.12 335 9.9e-32 103.4 0.0 1 3 3.5e-10 4.2e-08 25.8 0.0 5 71 8 78 6 81 0.94 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_101 - 1096 DNA_methylase PF00145.12 335 9.9e-32 103.4 0.0 2 3 2.1e-10 2.4e-08 26.5 0.0 71 119 419 476 415 486 0.90 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_101 - 1096 DNA_methylase PF00145.12 335 9.9e-32 103.4 0.0 3 3 3.4e-15 4e-13 42.2 0.0 136 304 533 753 528 805 0.55 # 79584 # 82871 # -1 # ID=1_101;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_10 - 1111 UBA_4 PF14555.1 43 0.00029 13.5 0.0 1 1 1.1e-05 0.0013 11.4 0.0 20 36 800 816 799 821 0.93 # 6560 # 9892 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.478 1_73 - 120 TF_Zn_Ribbon PF08271.7 43 7.3e-07 21.6 0.0 1 1 9.4e-09 1.1e-06 21.1 0.0 4 41 36 73 36 75 0.88 # 58672 # 59031 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.428 1_29 - 163 tRNA_anti-codon PF01336.20 75 0.00071 12.6 0.0 1 1 9.8e-06 0.0012 11.9 0.0 31 61 58 92 53 113 0.81 # 27560 # 28048 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_1 - 144 MarR_2 PF12802.2 62 0.00013 14.7 0.2 1 1 8.7e-06 0.00051 12.9 0.1 27 61 50 84 45 90 0.83 # 3 # 434 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.461 1_110 - 334 MarR_2 PF12802.2 62 0.00055 12.8 0.0 1 1 2.3e-05 0.0014 11.5 0.0 17 47 163 191 156 202 0.86 # 90035 # 91036 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.441 1_1 - 144 HTH_Crp_2 PF13545.1 76 0.00032 13.6 0.0 1 1 4.7e-06 0.00056 12.9 0.0 21 60 37 76 21 89 0.81 # 3 # 434 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.461 1_45 - 132 Methyltransf_21 PF05050.7 167 0.0004 13.5 0.0 1 1 3.4e-06 0.0004 13.5 0.0 112 161 62 115 4 125 0.72 # 43125 # 43520 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.407 1_22 - 640 AAA_13 PF13166.1 712 0.0057 8.2 9.1 1 2 1.1e-05 0.0014 10.3 5.4 378 465 199 281 158 284 0.62 # 19198 # 21117 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_22 - 640 AAA_13 PF13166.1 712 0.0057 8.2 9.1 2 2 0.05 5.9 -1.8 0.1 368 398 563 593 514 634 0.53 # 19198 # 21117 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_109 - 399 ArsA_ATPase PF02374.10 305 0.00052 12.2 0.0 1 1 1.2e-05 0.0014 10.8 0.0 4 52 111 166 108 255 0.74 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_109 - 399 AAA_31 PF13614.1 157 6.3e-07 22.6 0.0 1 2 0.0009 0.053 6.6 0.0 2 63 110 176 109 222 0.75 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_109 - 399 AAA_31 PF13614.1 157 6.3e-07 22.6 0.0 2 2 6e-06 0.00035 13.7 0.0 108 138 235 265 231 277 0.85 # 88822 # 90018 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_97 - 455 AAA_31 PF13614.1 157 7.3e-05 15.9 0.0 1 1 2.9e-06 0.00017 14.7 0.0 5 43 210 249 208 260 0.89 # 74999 # 76363 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_29 - 163 SSB PF00436.20 104 4.1e-43 138.7 0.3 1 1 4.6e-45 5.5e-43 138.3 0.3 1 100 6 109 6 113 0.96 # 27560 # 28048 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/d71d0b2c-796a-4e89-b77c-a8ebdd16abb9 # Target file: checkm_output/bins/pm540/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm540/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d71d0b2c-796a-4e89-b77c-a8ebdd16abb9 checkm_output/bins/pm540/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:08:39 2017 # [ok]