# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 309 ABC_tran PF00005.22 137 6.3e-33 105.5 0.0 1 1 2.7e-34 1e-32 104.9 0.0 2 136 18 162 17 163 0.93 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_29 - 283 SIS PF01380.17 131 2.3e-32 102.9 0.4 1 1 8.8e-34 3.3e-32 102.4 0.4 1 131 128 258 128 258 0.99 # 18860 # 19708 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_19 - 207 rve_3 PF13683.1 67 2.7e-14 44.0 0.0 1 1 1.1e-15 4.1e-14 43.5 0.0 6 67 127 188 122 188 0.93 # 9834 # 10454 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.544 1_31 - 168 APOBEC_N PF08210.6 188 4.9e-08 24.3 0.0 1 1 1.6e-09 5.7e-08 24.1 0.0 28 98 32 96 2 137 0.79 # 20609 # 21112 # 1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_14 - 309 MobB PF03205.9 140 0.00028 12.1 0.1 1 1 1.6e-05 0.00058 11.1 0.1 5 30 32 56 29 61 0.82 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_29 - 283 MarR PF01047.17 59 0.00021 12.5 0.1 1 2 4.3e-05 0.0016 9.7 0.0 18 46 35 63 19 63 0.91 # 18860 # 19708 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_29 - 283 MarR PF01047.17 59 0.00021 12.5 0.1 2 2 0.052 1.9 -0.1 0.0 7 23 226 242 220 244 0.71 # 18860 # 19708 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_14 - 309 AAA_19 PF13245.1 76 1.5e-05 16.2 0.0 1 2 2.6e-06 9.7e-05 13.7 0.0 10 43 27 55 16 67 0.84 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_19 PF13245.1 76 1.5e-05 16.2 0.0 2 2 0.089 3.3 -0.9 0.0 31 62 180 205 177 224 0.73 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_19 - 207 rve PF00665.21 120 1.8e-28 90.6 0.0 1 1 9.1e-30 3.3e-28 89.7 0.0 2 119 36 150 35 151 0.97 # 9834 # 10454 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.544 1_14 - 309 AAA_23 PF13476.1 202 0.00038 12.3 0.1 1 1 1.9e-05 0.00069 11.4 0.1 11 39 18 47 11 54 0.85 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 Zeta_toxin PF06414.7 201 2.6e-05 14.9 0.0 1 1 1.4e-06 5.2e-05 13.9 0.0 20 55 31 67 16 82 0.92 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_30 PF13604.1 196 4.9e-06 17.7 0.0 1 1 2.9e-07 1.1e-05 16.6 0.0 17 50 26 59 14 116 0.79 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_28 - 147 CPSase_L_D3 PF02787.14 123 0.00019 12.7 0.0 1 1 7.7e-06 0.00029 12.2 0.0 11 70 71 132 65 136 0.75 # 17967 # 18407 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.497 1_14 - 309 SMC_N PF02463.14 220 5e-05 14.1 0.2 1 2 6.1e-05 0.0023 8.7 0.1 21 44 23 47 13 67 0.81 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 SMC_N PF02463.14 220 5e-05 14.1 0.2 2 2 0.0021 0.077 3.7 0.0 134 181 132 175 75 210 0.74 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_20 - 109 HTH_Tnp_1 PF01527.15 76 3.4e-12 37.8 0.8 1 1 3.7e-13 1.4e-11 35.8 0.8 1 74 1 87 1 88 0.86 # 10717 # 11043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_29 - 283 SIS_2 PF13580.1 138 9.1e-09 26.7 0.5 1 3 0.024 0.87 0.8 0.0 55 94 9 49 5 58 0.86 # 18860 # 19708 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_29 - 283 SIS_2 PF13580.1 138 9.1e-09 26.7 0.5 2 3 2.9e-06 0.00011 13.5 0.1 20 71 117 167 102 172 0.83 # 18860 # 19708 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_29 - 283 SIS_2 PF13580.1 138 9.1e-09 26.7 0.5 3 3 8.2e-05 0.0031 8.8 0.0 99 138 175 214 167 214 0.88 # 18860 # 19708 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_14 - 309 AAA_21 PF13304.1 303 1.6e-12 39.4 0.0 1 2 1.3e-06 4.8e-05 14.9 0.1 1 24 29 52 29 76 0.78 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_21 PF13304.1 303 1.6e-12 39.4 0.0 2 2 5.5e-09 2e-07 22.7 0.0 181 298 96 194 64 199 0.82 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_19 - 207 rve_2 PF13333.1 52 3.2e-09 28.3 0.0 1 1 1.5e-10 5.6e-09 27.5 0.0 1 46 141 190 141 195 0.85 # 9834 # 10454 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.544 1_21 - 76 MerR_1 PF13411.1 69 1.5e-11 35.5 0.0 1 1 5.2e-13 1.9e-11 35.1 0.0 26 68 2 44 1 45 0.96 # 11069 # 11296 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_14 - 309 AAA_16 PF13191.1 185 2.8e-07 22.2 2.2 1 1 5.2e-08 1.9e-06 19.4 2.2 16 168 24 204 9 223 0.45 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_22 PF13401.1 131 3e-05 15.7 0.2 1 1 2.4e-06 9e-05 14.1 0.0 3 27 26 50 24 78 0.85 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_31 - 168 dCMP_cyt_deam_1 PF00383.17 102 3.8e-30 95.1 0.0 1 1 1.5e-31 5.4e-30 94.7 0.0 3 101 7 105 5 106 0.96 # 20609 # 21112 # 1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_14 - 309 AAA_29 PF13555.1 62 3.7e-06 18.0 0.1 1 1 2e-07 7.3e-06 17.0 0.1 19 41 24 45 16 60 0.81 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_28 PF13521.1 163 0.00019 12.9 0.1 1 1 2.7e-05 0.001 10.6 0.0 3 22 31 50 29 78 0.72 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 G-alpha PF00503.15 389 2.4e-05 14.6 0.0 1 1 8.9e-07 3.3e-05 14.1 0.0 62 84 31 53 14 72 0.89 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_18 PF13238.1 129 0.00039 12.3 0.0 1 1 1.8e-05 0.00066 11.5 0.0 3 21 32 50 31 119 0.81 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 DUF258 PF03193.11 161 3.1e-06 18.0 0.0 1 1 1.3e-07 4.8e-06 17.3 0.0 22 59 13 51 2 77 0.80 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 DUF87 PF01935.12 229 0.00039 11.7 0.1 1 1 2e-05 0.00075 10.8 0.1 29 54 33 56 19 60 0.78 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_30 - 145 HemN_C PF06969.11 66 4.1e-05 15.2 0.0 1 1 2.9e-06 0.00011 13.8 0.0 13 64 88 138 87 140 0.90 # 20117 # 20551 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_29 - 283 HTH_6 PF01418.12 77 2.5e-32 102.0 0.2 1 1 1.3e-33 5e-32 101.1 0.2 1 76 1 76 1 77 0.98 # 18860 # 19708 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_14 - 309 AAA_17 PF13207.1 121 4.9e-05 15.7 0.4 1 1 2.8e-06 0.0001 14.7 0.4 4 22 32 50 31 264 0.82 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 TIGR02211 TIGR02211 221 7.4e-35 111.6 0.1 1 1 2.7e-36 9.9e-35 111.2 0.1 19 216 15 209 2 215 0.92 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_31 - 168 Bd3614-deam PF14439.1 136 9.1e-07 20.3 0.0 1 1 4.3e-08 1.6e-06 19.6 0.0 77 97 77 97 49 131 0.81 # 20609 # 21112 # 1 # ID=1_31;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_14 - 309 AAA_25 PF13481.1 194 0.00035 11.5 1.0 1 3 3.4e-05 0.0013 9.7 0.0 31 50 25 44 8 48 0.88 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_25 PF13481.1 194 0.00035 11.5 1.0 2 3 0.098 3.6 -1.6 0.1 167 188 172 193 164 196 0.85 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_25 PF13481.1 194 0.00035 11.5 1.0 3 3 0.055 2 -0.8 0.2 188 188 193 193 172 291 0.55 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_15 PF13175.1 415 1.6e-05 15.5 0.0 1 2 2.2e-06 8.1e-05 13.2 0.1 10 44 15 49 12 66 0.86 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_15 PF13175.1 415 1.6e-05 15.5 0.0 2 2 0.027 0.99 -0.2 0.0 372 384 155 167 145 194 0.79 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_21 - 76 MerR PF00376.18 38 0.00018 12.6 0.0 1 1 8.6e-06 0.00032 11.8 0.0 27 38 3 14 1 14 0.91 # 11069 # 11296 # -1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.513 1_22 - 98 DDE_Tnp_IS1 PF03400.8 131 1.1e-50 162.7 0.4 1 1 3.1e-52 1.2e-50 162.6 0.4 35 131 1 97 1 97 0.99 # 11742 # 12035 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_29 - 283 TIGR01135 TIGR01135 607 3.4e-06 16.9 0.1 1 1 1.2e-07 4.5e-06 16.5 0.1 254 429 100 271 83 281 0.81 # 18860 # 19708 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_19 - 207 DDE_Tnp_IS240 PF13610.1 140 4.9e-09 27.8 0.0 1 1 1.7e-10 6.4e-09 27.4 0.0 3 137 42 178 40 180 0.92 # 9834 # 10454 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.544 1_15 - 153 ROK PF00480.15 179 0.00028 12.2 0.0 1 1 1.1e-05 0.00041 11.7 0.0 81 133 26 75 14 77 0.88 # 8458 # 8916 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_20 - 109 Phage_terminase PF10668.4 60 0.00014 13.2 0.0 1 1 8.1e-06 0.0003 12.1 0.0 9 45 12 53 5 68 0.80 # 10717 # 11043 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_14 - 309 AAA_10 PF12846.2 304 4e-06 17.9 0.4 1 3 3.4e-06 0.00013 13.0 0.2 5 22 31 48 28 58 0.87 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_10 PF12846.2 304 4e-06 17.9 0.4 2 3 0.031 1.2 -0.0 0.0 220 266 152 198 110 216 0.75 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 309 AAA_10 PF12846.2 304 4e-06 17.9 0.4 3 3 0.042 1.6 -0.5 0.0 127 160 246 275 226 285 0.69 # 7527 # 8453 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/83636a3e-2c13-4c98-9da1-3385e128a6ce # Target file: checkm_output/bins/pm518/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm518/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/83636a3e-2c13-4c98-9da1-3385e128a6ce checkm_output/bins/pm518/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:07:58 2017 # [ok]