# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 196 Methyltransf_4 PF02390.12 197 0.00035 12.0 0.0 1 1 7.4e-06 0.00051 11.5 0.0 14 52 48 86 33 136 0.87 # 8571 # 9158 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_42 - 72 HTH_38 PF13936.1 44 6.1e-06 18.2 0.1 1 2 2.1e-05 0.00071 11.6 0.6 6 37 3 33 3 34 0.89 # 26843 # 27058 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_42 - 72 HTH_38 PF13936.1 44 6.1e-06 18.2 0.1 2 2 0.0035 0.12 4.4 0.0 16 34 35 58 34 59 0.83 # 26843 # 27058 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_51 - 69 HTH_38 PF13936.1 44 5.3e-05 15.2 0.0 1 1 2.6e-06 8.9e-05 14.5 0.0 15 40 10 36 5 39 0.74 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_42 - 72 Pou PF00157.12 75 3.6e-05 15.8 0.2 1 1 7.9e-07 5.4e-05 15.2 0.2 9 32 1 24 1 37 0.88 # 26843 # 27058 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_51 - 69 HTH_8 PF02954.14 42 0.00037 12.5 0.0 1 1 8e-06 0.00055 11.9 0.0 17 36 15 34 8 35 0.86 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_51 - 69 Sigma70_r4_2 PF08281.7 54 0.00012 14.0 0.0 1 1 2.9e-06 0.0002 13.2 0.0 31 46 21 36 18 37 0.91 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_52 - 224 TIGR00668 TIGR00668 279 2.2e-14 45.6 0.0 1 2 1.2e-14 8.6e-13 40.4 0.0 4 71 16 81 13 90 0.89 # 31944 # 32615 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_52 - 224 TIGR00668 TIGR00668 279 2.2e-14 45.6 0.0 2 2 0.0033 0.23 2.9 0.0 221 257 180 215 170 220 0.84 # 31944 # 32615 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_51 - 69 Sigma70_r4 PF04545.11 50 6.9e-05 14.6 0.0 1 1 1.5e-06 0.00011 14.0 0.0 22 38 18 34 11 37 0.91 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_29 - 73 zf-dskA_traR PF01258.12 36 7.5e-11 34.1 8.7 1 1 1.4e-12 9.7e-11 33.7 8.7 4 35 33 64 30 65 0.93 # 21151 # 21369 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.457 1_41 - 211 HTH_37 PF13744.1 80 4.4e-06 18.9 0.1 1 1 1.1e-07 7.6e-06 18.1 0.1 23 58 7 42 2 58 0.85 # 26107 # 26739 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_51 - 69 P22_Cro PF14549.1 60 0.00042 12.4 0.0 1 1 8.5e-06 0.00058 12.0 0.0 5 28 12 35 9 40 0.88 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_42 - 72 HTH_25 PF13413.1 62 5e-06 18.5 0.2 1 1 2.3e-07 7.9e-06 17.9 0.2 1 34 7 40 7 44 0.94 # 26843 # 27058 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_12 - 614 HTH_25 PF13413.1 62 0.0003 12.8 0.0 1 3 0.0011 0.039 6.1 0.0 38 62 95 117 89 117 0.80 # 6730 # 8571 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.546 1_12 - 614 HTH_25 PF13413.1 62 0.0003 12.8 0.0 2 3 0.051 1.8 0.8 0.0 47 61 319 333 313 334 0.84 # 6730 # 8571 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.546 1_12 - 614 HTH_25 PF13413.1 62 0.0003 12.8 0.0 3 3 0.059 2 0.6 0.0 46 60 510 524 505 526 0.88 # 6730 # 8571 # 1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.546 1_46 - 97 DUF977 PF06163.6 127 1.3e-07 23.8 0.2 1 2 0.00017 0.011 7.8 0.0 14 61 4 51 1 67 0.85 # 29085 # 29375 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.512 1_46 - 97 DUF977 PF06163.6 127 1.3e-07 23.8 0.2 2 2 1e-06 6.9e-05 15.0 0.1 96 122 66 92 52 95 0.84 # 29085 # 29375 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.512 1_51 - 69 NUMOD1 PF07453.8 37 7.8e-05 14.9 0.0 1 1 1.5e-06 0.0001 14.5 0.0 13 36 13 36 5 37 0.85 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_41 - 211 HTH_3 PF01381.17 55 1.5e-15 49.3 0.1 1 1 6.3e-17 2.2e-15 48.7 0.1 1 55 7 60 7 60 0.97 # 26107 # 26739 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_42 - 72 HTH_3 PF01381.17 55 1.6e-15 49.2 0.0 1 1 5.6e-17 1.9e-15 48.9 0.0 1 55 8 61 8 61 0.97 # 26843 # 27058 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_51 - 69 HTH_23 PF13384.1 50 1.7e-06 20.0 0.0 1 1 2.2e-07 7.5e-06 18.0 0.0 19 39 18 38 11 43 0.86 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_43 - 94 HTH_23 PF13384.1 50 0.00016 13.7 0.0 1 1 6.5e-06 0.00022 13.3 0.0 11 41 18 48 7 67 0.77 # 27175 # 27456 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.489 1_51 - 69 HTH_7 PF02796.10 45 0.00031 13.0 0.0 1 1 6.5e-06 0.00045 12.5 0.0 25 44 20 39 12 40 0.90 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_41 - 211 HTH_19 PF12844.2 64 8.4e-17 53.5 0.0 1 1 4e-18 1.4e-16 52.8 0.0 2 62 5 64 4 66 0.94 # 26107 # 26739 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_42 - 72 HTH_19 PF12844.2 64 5.9e-13 41.1 0.0 1 1 1.9e-14 6.5e-13 41.0 0.0 2 62 6 65 5 67 0.92 # 26843 # 27058 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_56 - 146 Val_tRNA-synt_C PF10458.4 66 0.00045 12.7 0.2 1 2 0.047 3.3 0.4 0.0 41 65 23 47 22 48 0.81 # 34365 # 34802 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.507 1_56 - 146 Val_tRNA-synt_C PF10458.4 66 0.00045 12.7 0.2 2 2 6.5e-05 0.0045 9.5 0.0 1 24 53 76 53 83 0.93 # 34365 # 34802 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.507 1_51 - 69 HTH_24 PF13412.1 48 0.00013 13.8 0.0 1 1 3e-06 0.00021 13.1 0.0 19 39 18 38 17 39 0.93 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_51 - 69 HTH_30 PF13556.1 59 0.00046 12.2 0.0 1 1 1e-05 0.00071 11.6 0.0 9 31 13 35 10 39 0.87 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_46 - 97 HemN_C PF06969.11 66 0.00058 12.3 0.0 1 1 1.2e-05 0.00081 11.9 0.0 8 59 4 54 3 55 0.91 # 29085 # 29375 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.512 1_53 - 173 DUF1133 PF06576.6 176 2.9e-11 35.2 3.5 1 2 0.00031 0.021 6.3 1.8 16 38 8 30 3 37 0.83 # 32606 # 33124 # 1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_53 - 173 DUF1133 PF06576.6 176 2.9e-11 35.2 3.5 2 2 2e-10 1.4e-08 26.5 0.0 94 176 56 150 38 150 0.78 # 32606 # 33124 # 1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_41 - 211 HTH_31 PF13560.1 64 5.3e-11 35.0 0.0 1 1 2.7e-12 9.2e-11 34.3 0.0 4 59 5 58 2 62 0.92 # 26107 # 26739 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_42 - 72 HTH_31 PF13560.1 64 9.2e-11 34.3 0.0 1 1 3e-12 1e-10 34.1 0.0 2 58 4 58 3 63 0.94 # 26843 # 27058 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_51 - 69 HTH_Tnp_ISL3 PF13542.1 52 5.1e-05 14.8 0.0 1 1 1.1e-06 7.5e-05 14.3 0.0 24 50 12 39 8 40 0.86 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_53 - 173 Phage_antitermQ PF06530.7 126 8.1e-48 153.6 0.1 1 1 1.5e-49 1e-47 153.3 0.1 1 125 3 136 3 137 0.96 # 32606 # 33124 # 1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_43 - 94 Phage_CII PF05269.6 91 2.4e-32 103.2 0.0 1 1 3.7e-34 2.6e-32 103.2 0.0 4 91 5 92 1 92 0.96 # 27175 # 27456 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.489 1_42 - 72 HTH_26 PF13443.1 63 1.8e-05 17.3 0.6 1 1 9.8e-07 3.4e-05 16.4 0.6 2 54 4 58 3 60 0.82 # 26843 # 27058 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_41 - 211 HTH_26 PF13443.1 63 0.00018 14.1 0.0 1 1 1.4e-05 0.00048 12.7 0.0 10 57 15 60 7 66 0.83 # 26107 # 26739 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_51 - 69 HTH_17 PF12728.2 51 3e-06 19.8 0.0 1 1 5.5e-08 3.8e-06 19.5 0.0 6 26 21 41 18 59 0.79 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_51 - 69 HTH_11 PF08279.7 55 7.7e-05 14.7 0.0 1 1 1.6e-06 0.00011 14.2 0.0 20 37 21 38 6 39 0.90 # 31760 # 31966 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_46 - 97 MarR_2 PF12802.2 62 9.7e-05 14.4 0.0 1 1 1.8e-06 0.00013 14.1 0.0 10 53 7 48 5 71 0.89 # 29085 # 29375 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.512 1_46 - 97 HTH_Crp_2 PF13545.1 76 0.00014 14.1 0.0 1 1 1.4e-05 0.00033 12.9 0.0 33 66 21 54 19 56 0.93 # 29085 # 29375 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.512 1_42 - 72 HTH_Crp_2 PF13545.1 76 0.00024 13.3 0.1 1 1 1.9e-05 0.00044 12.5 0.1 11 46 5 34 2 37 0.83 # 26843 # 27058 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_41 - 211 HTH_Crp_2 PF13545.1 76 0.00025 13.3 0.2 1 1 2.3e-05 0.00053 12.2 0.0 22 48 9 35 2 38 0.85 # 26107 # 26739 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_46 - 97 HTH_20 PF12840.2 61 0.00033 12.9 0.0 1 1 7.7e-06 0.00053 12.2 0.0 15 57 7 49 6 53 0.90 # 29085 # 29375 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.512 1_64 - 253 Terminase_3 PF04466.8 387 0.00017 13.1 0.0 1 1 3.5e-06 0.00024 12.6 0.0 208 260 167 228 154 237 0.89 # 37249 # 38007 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/6dbfb1c6-990a-42cd-b681-54e82b47e0c4 # Target file: checkm_output/bins/pm517/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm517/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6dbfb1c6-990a-42cd-b681-54e82b47e0c4 checkm_output/bins/pm517/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:07:57 2017 # [ok]