# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_35 - 72 HTH_38 PF13936.1 44 3.5e-06 18.2 0.1 1 2 1e-05 0.0004 11.6 0.6 6 37 3 33 3 34 0.89 # 22609 # 22824 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_35 - 72 HTH_38 PF13936.1 44 3.5e-06 18.2 0.1 2 2 0.0017 0.068 4.4 0.0 16 34 35 58 34 59 0.83 # 22609 # 22824 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_35 - 72 Pou PF00157.12 75 2.1e-05 15.8 0.2 1 1 7.9e-07 3.1e-05 15.2 0.2 9 32 1 24 1 37 0.88 # 22609 # 22824 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_11 - 152 TIGR00019 TIGR00019 361 9.8e-22 68.5 0.3 1 2 0.079 3.1 -2.2 0.0 74 109 6 43 1 46 0.64 # 5910 # 6365 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.564 1_11 - 152 TIGR00019 TIGR00019 361 9.8e-22 68.5 0.3 2 2 4.3e-23 1.7e-21 67.7 0.2 222 282 89 149 81 151 0.89 # 5910 # 6365 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.564 1_18 - 368 PUA PF01472.15 74 2.5e-25 79.7 0.1 1 1 2e-26 7.9e-25 78.1 0.1 1 74 276 350 276 350 0.98 # 12656 # 13759 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.558 1_22 - 73 zf-dskA_traR PF01258.12 36 4.2e-11 34.1 8.7 1 1 1.4e-12 5.5e-11 33.7 8.7 4 35 33 64 30 65 0.93 # 16917 # 17135 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.457 1_34 - 211 HTH_37 PF13744.1 80 2.5e-06 18.9 0.1 1 1 1.1e-07 4.3e-06 18.1 0.1 23 58 7 42 2 58 0.85 # 21873 # 22505 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_35 - 72 HTH_25 PF13413.1 62 2.8e-06 18.5 0.2 1 1 1.1e-07 4.5e-06 17.9 0.2 1 34 7 40 7 44 0.94 # 22609 # 22824 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_34 - 211 HTH_3 PF01381.17 55 8.2e-16 49.3 0.1 1 1 6.3e-17 1.2e-15 48.7 0.1 1 55 7 60 7 60 0.97 # 21873 # 22505 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_35 - 72 HTH_3 PF01381.17 55 8.9e-16 49.2 0.0 1 1 5.6e-17 1.1e-15 48.9 0.0 1 55 8 61 8 61 0.97 # 22609 # 22824 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_36 - 94 HTH_23 PF13384.1 50 9.2e-05 13.7 0.0 1 1 3.3e-06 0.00013 13.3 0.0 11 41 18 48 7 67 0.77 # 22941 # 23222 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.489 1_34 - 211 HTH_19 PF12844.2 64 4.8e-17 53.5 0.0 1 1 4e-18 7.9e-17 52.8 0.0 2 62 5 64 4 66 0.94 # 21873 # 22505 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_35 - 72 HTH_19 PF12844.2 64 3.3e-13 41.1 0.0 1 1 1.9e-14 3.7e-13 41.0 0.0 2 62 6 65 5 67 0.92 # 22609 # 22824 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_5 - 209 IMS_HHH PF11798.3 32 1.5e-11 35.5 0.0 1 1 1.1e-12 4.1e-11 34.1 0.0 1 31 166 196 166 196 0.97 # 2246 # 2872 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_19 - 418 TIGR00539 TIGR00539 361 8.5e-05 13.0 0.1 1 1 3.7e-06 0.00014 12.2 0.1 65 116 19 68 16 80 0.88 # 13771 # 15024 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_34 - 211 HTH_31 PF13560.1 64 3e-11 35.0 0.0 1 1 2.7e-12 5.2e-11 34.3 0.0 4 59 5 58 2 62 0.92 # 21873 # 22505 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_35 - 72 HTH_31 PF13560.1 64 5.2e-11 34.3 0.0 1 1 3e-12 5.9e-11 34.1 0.0 2 58 4 58 3 63 0.94 # 22609 # 22824 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_11 - 152 TIGR00020 TIGR00020 365 3e-25 80.1 0.0 1 1 9.1e-27 3.6e-25 79.9 0.0 155 295 12 148 3 151 0.86 # 5910 # 6365 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.564 1_17 - 98 DDE_Tnp_IS1 PF03400.8 131 2.6e-53 171.2 0.5 1 1 7.4e-55 2.9e-53 171.0 0.5 35 131 1 97 1 97 0.99 # 12172 # 12465 # 1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.524 1_36 - 94 Phage_CII PF05269.6 91 1.4e-32 103.2 0.0 1 1 3.7e-34 1.5e-32 103.2 0.0 4 91 5 92 1 92 0.96 # 22941 # 23222 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.489 1_35 - 72 HTH_26 PF13443.1 63 1e-05 17.3 0.6 1 1 9.8e-07 1.9e-05 16.4 0.6 2 54 4 58 3 60 0.82 # 22609 # 22824 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_34 - 211 HTH_26 PF13443.1 63 0.0001 14.1 0.0 1 1 1.4e-05 0.00027 12.7 0.0 10 57 15 60 7 66 0.83 # 21873 # 22505 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_18 - 368 TIGR02075 TIGR02075 233 1.6e-07 22.4 0.1 1 2 0.00088 0.034 4.9 0.0 3 49 6 51 4 72 0.87 # 12656 # 13759 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.558 1_18 - 368 TIGR02075 TIGR02075 233 1.6e-07 22.4 0.1 2 2 7.3e-07 2.8e-05 15.0 0.0 138 180 150 191 98 200 0.93 # 12656 # 13759 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.558 1_35 - 72 HTH_Crp_2 PF13545.1 76 0.00013 13.3 0.1 1 1 1.3e-05 0.00025 12.5 0.1 11 46 5 34 2 37 0.83 # 22609 # 22824 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.458 1_34 - 211 HTH_Crp_2 PF13545.1 76 0.00014 13.3 0.2 1 1 1.5e-05 0.0003 12.2 0.0 22 48 9 35 2 38 0.85 # 21873 # 22505 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/d55c741f-59ff-47b4-b40e-2719ab5dcd64 # Target file: checkm_output/bins/pm515/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm515/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d55c741f-59ff-47b4-b40e-2719ab5dcd64 checkm_output/bins/pm515/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:07:56 2017 # [ok]