# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 6_3 - 186 HTH_IclR PF09339.5 52 1.2e-05 17.7 0.2 1 1 9.2e-07 4.6e-05 15.9 0.0 15 40 155 180 151 181 0.85 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 7_6 - 511 HTH_IclR PF09339.5 52 5.2e-05 15.7 0.2 1 2 0.042 2.1 1.0 0.0 24 36 165 177 163 186 0.81 # 2765 # 4297 # 1 # ID=7_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.693 7_6 - 511 HTH_IclR PF09339.5 52 5.2e-05 15.7 0.2 2 2 1.9e-05 0.00094 11.7 0.2 25 50 228 253 222 255 0.93 # 2765 # 4297 # 1 # ID=7_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.693 6_3 - 186 HTH_22 PF13309.1 64 0.00028 13.6 1.5 1 1 1.2e-05 0.0012 11.6 0.1 35 63 156 179 143 180 0.76 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 4_3 - 211 TIGR01173 TIGR01173 452 4.4e-10 31.5 0.1 1 1 6.4e-12 6.4e-10 30.9 0.1 390 446 109 165 100 170 0.87 # 1872 # 2504 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.494 1_17 - 302 rve_3 PF13683.1 67 6.9e-20 63.3 0.1 1 1 2.4e-21 2.4e-19 61.6 0.0 2 67 216 281 215 281 0.98 # 20750 # 21655 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 7_2 - 246 Methyltransf_4 PF02390.12 197 0.00014 13.8 0.1 1 1 2.7e-06 0.00027 12.9 0.0 17 52 27 62 3 102 0.72 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 1_28 - 877 FtsK_SpoIIIE PF01580.13 205 1.5e-05 17.5 0.1 1 2 2e-06 0.0002 13.7 0.0 39 63 477 505 464 508 0.84 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_28 - 877 FtsK_SpoIIIE PF01580.13 205 1.5e-05 17.5 0.1 2 2 0.015 1.5 1.1 0.0 75 166 531 626 530 669 0.82 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 6_3 - 186 HTH_40 PF14493.1 91 0.00066 12.8 0.6 1 1 2.1e-05 0.0021 11.2 0.1 7 32 152 177 147 183 0.89 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 6_3 - 186 HTH_38 PF13936.1 44 3.1e-06 19.6 1.4 1 1 1.2e-07 5.9e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 3_6 - 403 HTH_38 PF13936.1 44 0.00085 11.8 0.0 1 1 3.8e-05 0.0019 10.7 0.0 11 29 105 123 103 125 0.90 # 4559 # 5767 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_28 - 877 MobB PF03205.9 140 0.00073 12.2 0.1 1 1 5.4e-05 0.0027 10.3 0.0 4 37 484 516 482 524 0.79 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_8 - 739 MobB PF03205.9 140 0.001 11.7 0.0 1 1 5.3e-05 0.0026 10.4 0.0 7 34 192 219 188 225 0.89 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_7 - 1757 AAA_19 PF13245.1 76 1.7e-07 23.9 2.0 1 1 1.1e-08 5.6e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_33 - 123 AAA_19 PF13245.1 76 0.00067 12.3 0.0 1 1 2.2e-05 0.0011 11.7 0.0 13 37 91 115 82 122 0.78 # 32897 # 33265 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_33 - 123 KTI12 PF08433.5 270 0.00085 11.4 0.1 1 1 1.4e-05 0.0014 10.7 0.1 5 30 92 117 91 120 0.87 # 32897 # 33265 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_17 - 302 rve PF00665.21 120 5e-25 80.9 0.1 1 1 3.4e-26 1.1e-24 79.7 0.0 3 119 123 243 121 244 0.96 # 20750 # 21655 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 8_2 - 265 rve PF00665.21 120 1.2e-13 44.2 0.0 1 2 0.064 2.1 1.4 0.0 83 102 40 59 15 61 0.89 # 551 # 1345 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 8_2 - 265 rve PF00665.21 120 1.2e-13 44.2 0.0 2 2 5.5e-14 1.8e-12 40.3 0.0 8 117 83 189 79 192 0.90 # 551 # 1345 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 9_1 - 235 rve PF00665.21 120 3.3e-13 42.8 0.1 1 2 0.045 1.5 1.9 0.0 78 102 27 49 6 54 0.84 # 64 # 768 # 1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 9_1 - 235 rve PF00665.21 120 3.3e-13 42.8 0.1 2 2 1.8e-13 6.1e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 64 # 768 # 1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_16 - 188 Methyltransf_26 PF13659.1 117 4.7e-14 45.4 0.0 1 1 2.4e-15 7.9e-14 44.6 0.0 2 114 52 147 51 150 0.90 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 7_2 - 246 Methyltransf_26 PF13659.1 117 4.5e-09 29.3 0.0 1 1 2.2e-10 7.4e-09 28.6 0.0 2 83 31 106 30 200 0.81 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_7 - 157 Methyltransf_26 PF13659.1 117 3.2e-06 20.1 0.0 1 1 1.5e-07 4.9e-06 19.5 0.0 4 45 96 136 93 152 0.82 # 4453 # 4923 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.594 1_8 - 739 Zeta_toxin PF06414.7 201 0.00084 11.4 0.0 1 1 3.5e-05 0.0035 9.3 0.0 21 49 190 219 182 236 0.85 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_7 - 1757 AAA_30 PF13604.1 196 8.1e-45 145.7 13.9 1 3 0.047 2.3 0.6 0.0 41 86 223 269 218 280 0.84 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_30 PF13604.1 196 8.1e-45 145.7 13.9 2 3 1.5e-05 0.00076 12.0 3.0 7 132 420 539 416 561 0.82 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_30 PF13604.1 196 8.1e-45 145.7 13.9 3 3 8.1e-44 4.1e-42 136.9 1.5 1 186 968 1156 968 1160 0.94 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 739 AAA_30 PF13604.1 196 0.00062 12.3 0.0 1 1 2.6e-05 0.0013 11.2 0.0 21 57 188 224 180 230 0.85 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_18 - 122 CPSase_L_D3 PF02787.14 123 0.00051 12.7 0.2 1 2 0.0027 0.27 3.9 0.0 5 31 11 37 8 49 0.85 # 21613 # 21978 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_18 - 122 CPSase_L_D3 PF02787.14 123 0.00051 12.7 0.2 2 2 0.00031 0.031 7.0 0.1 42 80 76 112 73 117 0.89 # 21613 # 21978 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_18 - 122 HTH_Tnp_1 PF01527.15 76 3.7e-21 67.8 1.1 1 1 9.7e-23 4.8e-21 67.5 0.6 2 74 8 87 7 89 0.89 # 21613 # 21978 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 9_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00025 14.0 0.3 1 1 1.1e-05 0.00054 12.9 0.3 4 51 6 58 4 63 0.79 # 64 # 768 # 1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_8 - 739 TraG-D_C PF12696.2 128 7.7e-21 67.2 0.0 1 1 1.4e-22 1.4e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 7_2 - 246 CMAS PF02353.15 273 0.00017 13.6 0.6 1 1 3e-06 0.0003 12.8 0.0 51 105 18 71 12 99 0.78 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 9_1 - 235 DDE_3 PF13358.1 146 0.00069 12.3 0.0 1 1 2.1e-05 0.0021 10.7 0.0 32 90 82 141 59 146 0.87 # 64 # 768 # 1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_16 - 188 UPF0020 PF01170.13 180 0.00087 11.8 0.0 1 1 2.9e-05 0.0029 10.1 0.0 18 43 40 65 32 130 0.71 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 188 Methyltransf_25 PF13649.1 101 0.00012 15.3 0.0 1 1 1.8e-06 0.00018 14.8 0.0 1 101 54 142 54 142 0.81 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_35 - 484 DivIC PF04977.10 80 0.00093 11.6 4.6 1 1 1.9e-05 0.0019 10.7 4.6 17 66 76 124 72 125 0.92 # 33760 # 35211 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.578 3_6 - 403 DDE_Tnp_ISL3 PF01610.12 249 3.4e-05 16.4 0.1 1 2 7.3e-05 0.0073 8.8 0.0 31 82 201 251 194 266 0.85 # 4559 # 5767 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 3_6 - 403 DDE_Tnp_ISL3 PF01610.12 249 3.4e-05 16.4 0.1 2 2 0.0014 0.14 4.5 0.2 159 232 275 348 255 355 0.62 # 4559 # 5767 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 5_6 - 474 KorB PF08535.5 93 3.2e-05 17.0 0.0 1 1 9.1e-07 9.1e-05 15.5 0.0 2 42 152 192 151 206 0.91 # 2700 # 4121 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 7_5 - 114 Cpn60_TCP1 PF00118.19 485 0.00011 13.8 0.1 1 1 1.1e-06 0.00011 13.7 0.1 457 484 64 91 39 92 0.92 # 2197 # 2538 # 1 # ID=7_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.635 2_7 - 157 N6_N4_Mtase PF01555.13 231 3.7e-26 84.9 0.0 1 2 0.00013 0.013 7.9 0.0 66 114 9 53 2 69 0.78 # 4453 # 4923 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.594 2_7 - 157 N6_N4_Mtase PF01555.13 231 3.7e-26 84.9 0.0 2 2 2.4e-25 2.4e-23 75.7 0.0 169 228 70 129 55 132 0.90 # 4453 # 4923 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.594 2_5 - 140 Hydantoinase_A PF01968.13 290 0.00012 14.1 0.0 1 1 1.3e-06 0.00013 14.0 0.0 213 265 60 116 15 127 0.77 # 2763 # 3182 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 1_8 - 739 AAA_16 PF13191.1 185 3.9e-06 19.9 0.0 1 1 4.1e-07 2e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_33 - 123 AAA_16 PF13191.1 185 0.0013 11.6 0.1 1 1 4.6e-05 0.0023 10.8 0.1 22 48 86 112 80 119 0.88 # 32897 # 33265 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 7_2 - 246 NodS PF05401.6 201 2.6e-08 26.4 0.0 1 1 4.2e-10 4.2e-08 25.7 0.0 41 120 27 106 7 116 0.86 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 1_12 - 941 Orn_Arg_deC_N PF02784.11 251 0.001 11.2 0.0 1 1 1e-05 0.001 11.2 0.0 171 212 610 650 598 684 0.76 # 14823 # 17645 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.512 6_3 - 186 HTH_Tnp_IS630 PF01710.11 120 9.4e-05 15.0 0.0 1 1 1.9e-06 0.00019 14.0 0.0 8 44 148 184 145 185 0.90 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 9_1 - 235 HTH_32 PF13565.1 77 1.3e-06 22.1 0.2 1 1 1.1e-07 5.6e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 64 # 768 # 1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 8_2 - 265 HTH_32 PF13565.1 77 0.0002 15.1 0.2 1 1 1.3e-05 0.00067 13.4 0.2 37 76 25 60 15 61 0.83 # 551 # 1345 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 1_18 - 122 HTH_23 PF13384.1 50 2.3e-07 23.3 0.1 1 1 2.3e-08 4.6e-07 22.3 0.1 3 48 14 60 12 62 0.90 # 21613 # 21978 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 5_6 - 474 HTH_23 PF13384.1 50 5.6e-07 22.1 0.0 1 1 1.9e-07 3.8e-06 19.4 0.0 12 40 148 176 141 180 0.92 # 2700 # 4121 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 9_1 - 235 HTH_23 PF13384.1 50 7.8e-06 18.4 0.5 1 2 0.079 1.6 1.6 0.0 7 27 11 35 7 36 0.69 # 64 # 768 # 1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 9_1 - 235 HTH_23 PF13384.1 50 7.8e-06 18.4 0.5 2 2 9.3e-06 0.00019 14.0 0.1 28 42 41 55 40 62 0.87 # 64 # 768 # 1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 6_3 - 186 HTH_23 PF13384.1 50 4.4e-05 16.0 0.3 1 1 2.2e-06 4.4e-05 16.0 0.3 5 39 146 180 142 184 0.87 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 3_6 - 403 HTH_23 PF13384.1 50 0.00073 12.2 0.1 1 1 0.00016 0.0031 10.1 0.0 9 27 106 124 105 125 0.93 # 4559 # 5767 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 6_3 - 186 HTH_7 PF02796.10 45 2.3e-13 42.7 1.1 1 1 5.1e-15 5.1e-13 41.6 0.1 1 44 141 181 141 182 0.97 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_18 - 122 HTH_29 PF13551.1 112 2.3e-05 17.5 0.2 1 1 1e-06 3.4e-05 16.9 0.2 11 71 29 88 18 109 0.67 # 21613 # 21978 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 6_3 - 186 HTH_29 PF13551.1 112 0.00011 15.3 0.6 1 2 0.074 2.5 1.3 0.2 24 46 114 136 88 153 0.67 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 6_3 - 186 HTH_29 PF13551.1 112 0.00011 15.3 0.6 2 2 3.1e-05 0.001 12.2 0.0 4 35 151 181 148 184 0.90 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 5_6 - 474 HTH_29 PF13551.1 112 0.0004 13.5 0.0 1 1 7.6e-05 0.0025 10.9 0.0 8 36 150 177 143 189 0.86 # 2700 # 4121 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 2_16 - 188 Met_10 PF02475.11 200 0.00087 11.8 0.0 1 1 1.1e-05 0.0011 11.4 0.0 98 189 47 132 29 145 0.78 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 9_1 - 235 DDE_Tnp_IS66 PF03050.9 271 2.7e-12 39.3 0.6 1 1 7.5e-14 3.7e-12 38.9 0.4 5 131 10 143 6 158 0.86 # 64 # 768 # 1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 8_2 - 265 DDE_Tnp_IS66 PF03050.9 271 1.3e-09 30.6 0.4 1 1 3.8e-11 1.9e-09 30.0 0.4 11 132 26 153 18 191 0.85 # 551 # 1345 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 7_2 - 246 Methyltransf_31 PF13847.1 152 1.1e-07 24.5 0.1 1 1 3.1e-09 1.5e-07 24.0 0.1 2 76 28 97 27 213 0.87 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_16 - 188 Methyltransf_31 PF13847.1 152 3.4e-07 22.9 0.0 1 1 8.3e-09 4.2e-07 22.6 0.0 5 119 52 162 48 183 0.84 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_8 - 739 TrwB_AAD_bind PF10412.4 386 3.7e-150 492.7 0.0 1 1 9e-152 4.5e-150 492.4 0.0 2 386 172 561 171 561 0.99 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_28 - 877 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.4 0.2 1 2 4.8e-08 2.4e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_28 - 877 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.4 0.2 2 2 0.054 2.7 -0.7 0.1 261 317 714 770 706 773 0.92 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_16 - 188 Methyltransf_12 PF08242.7 99 1.8e-05 18.1 0.0 1 1 3.1e-07 3.1e-05 17.3 0.0 1 99 55 144 55 144 0.87 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 188 Methyltrans_SAM PF10672.4 286 0.00072 11.3 0.0 1 1 9.9e-06 0.00099 10.9 0.0 196 261 113 173 93 180 0.78 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_28 - 877 DUF87 PF01935.12 229 2.3e-07 23.7 0.0 1 1 6.9e-09 6.9e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_18 - 122 HTH_28 PF13518.1 52 1.8e-08 27.2 0.5 1 1 1.2e-09 3.9e-08 26.2 0.0 1 43 17 60 17 63 0.93 # 21613 # 21978 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 9_1 - 235 HTH_28 PF13518.1 52 5.8e-05 16.0 1.2 1 1 7.6e-06 0.00025 14.0 1.2 22 36 40 54 13 55 0.76 # 64 # 768 # 1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 6_3 - 186 HTH_28 PF13518.1 52 0.00013 14.8 0.0 1 1 1.3e-05 0.00042 13.2 0.0 8 33 154 179 148 184 0.82 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 2_16 - 188 TIGR03533 TIGR03533 284 1.7e-05 16.9 0.0 1 1 2.6e-07 2.6e-05 16.2 0.0 114 210 43 133 36 141 0.86 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 188 TIGR03534 TIGR03534 253 3.7e-08 25.7 0.0 1 1 8.7e-10 4.3e-08 25.4 0.0 81 175 45 131 15 148 0.86 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 7_2 - 246 TIGR03534 TIGR03534 253 6.6e-07 21.6 0.0 1 1 2.5e-08 1.2e-06 20.7 0.0 73 166 14 103 12 119 0.80 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 7_2 - 246 Methyltransf_32 PF13679.1 141 1.2e-05 17.9 0.0 1 1 1.9e-07 1.9e-05 17.3 0.0 12 70 17 68 9 121 0.82 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 1_7 - 1757 UvrD_C_2 PF13538.1 104 4.4e-08 26.2 1.0 1 2 0.014 1.4 2.1 0.0 6 43 1227 1264 1223 1294 0.75 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 UvrD_C_2 PF13538.1 104 4.4e-08 26.2 1.0 2 2 1.4e-08 1.4e-06 21.3 0.2 3 102 1341 1444 1339 1446 0.79 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 7_2 - 246 TIGR00755 TIGR00755 256 1.6e-44 144.7 2.8 1 1 3.9e-46 1.9e-44 144.4 2.8 5 227 5 221 1 235 0.88 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_16 - 188 TIGR00755 TIGR00755 256 3.6e-09 28.8 0.0 1 1 9.8e-11 4.9e-09 28.4 0.0 8 105 29 123 25 134 0.91 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_6 - 167 StbA PF06406.6 318 4.4e-86 281.5 0.2 1 1 9.6e-88 4.8e-86 281.4 0.2 1 166 1 166 1 166 0.99 # 3223 # 3723 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.417 2_5 - 140 StbA PF06406.6 318 3.4e-55 180.0 0.4 1 1 7.5e-57 3.8e-55 179.9 0.4 182 317 1 136 1 137 0.99 # 2763 # 3182 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 2_5 - 140 YbaB_DNA_bd PF02575.11 93 0.00033 13.5 0.0 1 2 0.0087 0.87 2.5 0.0 63 78 20 35 13 42 0.84 # 2763 # 3182 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 2_5 - 140 YbaB_DNA_bd PF02575.11 93 0.00033 13.5 0.0 2 2 0.00011 0.011 8.6 0.0 63 88 66 91 51 96 0.84 # 2763 # 3182 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 1_8 - 739 AAA_17 PF13207.1 121 0.00032 14.4 0.0 1 1 8.7e-06 0.00087 13.0 0.0 3 28 189 218 187 303 0.70 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 3_6 - 403 Transposase_mut PF00872.13 381 5.2e-124 406.5 0.0 1 1 5.8e-126 5.8e-124 406.3 0.0 11 379 12 377 1 379 0.94 # 4559 # 5767 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 7_2 - 246 DOT1 PF08123.8 205 3.3e-05 16.2 0.2 1 1 8.2e-07 8.2e-05 14.9 0.0 28 88 15 73 11 100 0.79 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 1_28 - 877 Pox_A32 PF04665.7 241 0.00074 11.7 0.1 1 1 2.3e-05 0.0023 10.1 0.0 7 38 474 505 470 520 0.85 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_18 - 122 HTH_Tnp_ISL3 PF13542.1 52 0.00035 12.7 1.6 1 2 7.2e-06 0.00072 11.7 0.1 7 42 8 44 8 46 0.92 # 21613 # 21978 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_18 - 122 HTH_Tnp_ISL3 PF13542.1 52 0.00035 12.7 1.6 2 2 0.081 8.1 -1.3 0.0 24 34 53 62 51 64 0.81 # 21613 # 21978 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_18 - 122 CENP-B_N PF04218.8 53 3.1e-06 19.5 0.0 1 1 6e-08 6e-06 18.6 0.0 3 44 9 51 8 55 0.86 # 21613 # 21978 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_8 - 739 T4SS-DNA_transf PF02534.9 469 7.3e-10 30.8 0.0 1 1 3.8e-11 1.9e-09 29.4 0.0 264 361 382 476 198 500 0.82 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_28 - 877 T4SS-DNA_transf PF02534.9 469 0.00032 12.2 0.0 1 2 0.0047 0.23 2.8 0.0 105 182 534 605 471 624 0.82 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_28 - 877 T4SS-DNA_transf PF02534.9 469 0.00032 12.2 0.0 2 2 0.00023 0.011 7.1 0.0 319 378 712 770 663 772 0.91 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_16 - 188 MTS PF05175.9 170 8.7e-10 31.1 0.0 1 1 2.4e-11 1.2e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 7_2 - 246 MTS PF05175.9 170 6.2e-08 25.1 0.0 1 1 2e-09 1e-07 24.4 0.0 24 118 22 113 9 121 0.85 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 7_2 - 246 Methyltransf_23 PF13489.1 161 1e-06 21.5 0.1 1 1 2.9e-08 2.9e-06 20.0 0.1 7 60 16 85 9 225 0.83 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 3_2 - 241 Trans_reg_C PF00486.23 77 6.7e-29 92.6 0.0 1 1 2e-30 2e-28 91.1 0.0 1 77 155 231 155 231 0.98 # 1959 # 2681 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.541 8_2 - 265 DDE_Tnp_IS240 PF13610.1 140 1.1e-53 173.8 0.0 1 1 4.3e-55 1.4e-53 173.5 0.0 3 139 83 221 81 222 0.98 # 551 # 1345 # 1 # ID=8_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 9_1 - 235 DDE_Tnp_IS240 PF13610.1 140 2.2e-53 172.9 0.1 1 1 9e-55 3e-53 172.5 0.1 4 139 75 212 73 213 0.99 # 64 # 768 # 1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 3_6 - 403 DDE_Tnp_IS240 PF13610.1 140 0.00011 15.1 0.0 1 1 0.00012 0.0041 10.0 0.0 87 126 326 365 187 375 0.86 # 4559 # 5767 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 7_6 - 511 Zn-ribbon_8 PF09723.5 42 0.0039 10.1 6.7 1 2 0.0015 0.15 5.1 4.6 8 35 84 109 83 114 0.87 # 2765 # 4297 # 1 # ID=7_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.693 7_6 - 511 Zn-ribbon_8 PF09723.5 42 0.0039 10.1 6.7 2 2 0.0027 0.27 4.2 0.0 22 38 454 469 447 473 0.76 # 2765 # 4297 # 1 # ID=7_6;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.693 6_3 - 186 TrmB PF01978.14 68 5.5e-05 15.8 0.0 1 1 1.1e-06 0.00011 14.8 0.0 19 44 155 180 150 181 0.89 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_28 - 877 AAA_10 PF12846.2 304 4.1e-49 160.5 0.0 1 1 1.5e-50 7.4e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 28131 # 30761 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_8 - 739 AAA_10 PF12846.2 304 1.5e-10 33.9 0.0 1 1 6.1e-11 3.1e-09 29.5 0.0 3 296 187 494 186 500 0.68 # 10335 # 12551 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 6_3 - 186 HTH_20 PF12840.2 61 2e-06 20.5 0.2 1 2 0.0037 0.37 3.6 0.0 33 52 8 27 4 28 0.91 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 6_3 - 186 HTH_20 PF12840.2 61 2e-06 20.5 0.2 2 2 9.1e-06 0.00091 12.0 0.1 3 43 110 177 108 180 0.91 # 335 # 892 # 1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 7_2 - 246 PCMT PF01135.14 210 7.7e-07 21.7 0.0 1 1 1.6e-08 1.6e-06 20.7 0.0 58 122 14 75 2 87 0.83 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 7_2 - 246 RrnaAD PF00398.15 262 3e-74 242.2 6.7 1 1 6.6e-76 3.3e-74 242.1 6.7 3 261 2 242 1 243 0.96 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 2_16 - 188 RrnaAD PF00398.15 262 1.1e-08 27.3 0.0 1 1 2.8e-10 1.4e-08 26.9 0.0 9 113 29 128 24 148 0.87 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 188 Methyltransf_18 PF12847.2 112 1.9e-10 34.3 0.0 1 1 7.8e-12 3.9e-10 33.3 0.0 4 109 53 146 50 148 0.90 # 10647 # 11210 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 7_2 - 246 Methyltransf_18 PF12847.2 112 1.3e-09 31.5 0.0 1 1 3.9e-11 1.9e-09 31.0 0.0 2 74 30 98 29 153 0.87 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 7_2 - 246 Methyltransf_11 PF08241.7 95 5.9e-05 16.5 0.0 1 1 1.2e-06 0.00012 15.5 0.0 2 59 35 92 34 100 0.85 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 4_6 - 280 Pterin_bind PF00809.17 210 2.5e-58 189.7 0.0 1 1 3e-60 3e-58 189.5 0.0 1 210 7 216 7 216 0.98 # 3605 # 4444 # 1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 3_6 - 403 MULE PF10551.4 93 2.6e-15 49.3 0.0 1 1 1.7e-16 1.7e-14 46.8 0.0 16 91 185 260 171 262 0.85 # 4559 # 5767 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_7 - 1757 AAA_11 PF13086.1 236 0.00021 13.8 0.0 1 1 2.1e-06 0.00021 13.8 0.0 2 75 969 1039 968 1059 0.81 # 5065 # 10335 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 5_8 - 176 SSB PF00436.20 104 2.4e-41 132.8 0.4 1 1 3.4e-43 3.4e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 4473 # 5000 # -1 # ID=5_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_17 - 302 HTH_21 PF13276.1 60 6.2e-19 60.8 2.0 1 2 2.7e-19 2.7e-17 55.5 0.6 6 57 49 106 45 109 0.79 # 20750 # 21655 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 1_17 - 302 HTH_21 PF13276.1 60 6.2e-19 60.8 2.0 2 2 0.0032 0.32 4.0 0.0 11 33 264 288 255 301 0.77 # 20750 # 21655 # -1 # ID=1_17;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 7_2 - 246 TRM13 PF05206.9 259 0.00013 14.1 0.1 1 1 2.1e-06 0.00021 13.5 0.1 4 67 15 78 12 101 0.79 # 420 # 1157 # 1 # ID=7_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.332 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/9cce42f2-8e83-400a-a81a-60d0b3e90183 # Target file: checkm_output/bins/pm510/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm510/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9cce42f2-8e83-400a-a81a-60d0b3e90183 checkm_output/bins/pm510/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:07:47 2017 # [ok]