# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_18 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.5 0.0 1 2 0.0004 0.036 6.2 0.0 112 127 18 33 5 81 0.70 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_18 - 228 Cons_hypoth95 PF03602.10 183 1.2e-05 17.5 0.0 2 2 3.9e-05 0.0035 9.5 0.0 41 62 162 183 145 219 0.78 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_12 - 254 ABC_tran PF00005.22 137 4.3e-37 120.2 0.0 1 1 6.5e-39 5.8e-37 119.8 0.0 1 137 18 167 18 167 0.96 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_18 - 228 TIGR00095 TIGR00095 194 0.00011 14.3 0.0 1 2 0.00062 0.056 5.5 0.0 122 138 18 34 3 79 0.71 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_18 - 228 TIGR00095 TIGR00095 194 0.00011 14.3 0.0 2 2 0.00024 0.022 6.8 0.0 53 86 164 199 155 218 0.77 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_12 - 1588 Sigma54_activat PF00158.21 168 9.3e-06 17.9 0.0 1 1 2.1e-07 1.9e-05 16.9 0.0 11 83 215 286 209 307 0.81 # 7636 # 12399 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_27 - 877 FtsK_SpoIIIE PF01580.13 205 1.3e-05 17.5 0.1 1 2 2e-06 0.00018 13.7 0.0 39 63 477 505 464 508 0.84 # 26070 # 28700 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_27 - 877 FtsK_SpoIIIE PF01580.13 205 1.3e-05 17.5 0.1 2 2 0.015 1.4 1.1 0.0 75 166 531 626 530 669 0.82 # 26070 # 28700 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_27 - 877 MobB PF03205.9 140 0.00023 13.7 0.2 1 2 5.4e-05 0.0024 10.3 0.0 4 37 484 516 482 524 0.79 # 26070 # 28700 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_27 - 877 MobB PF03205.9 140 0.00023 13.7 0.2 2 2 0.069 3.1 0.3 0.0 25 64 696 733 691 745 0.86 # 26070 # 28700 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_9 - 680 MobB PF03205.9 140 0.0011 11.5 0.0 1 1 4.8e-05 0.0022 10.5 0.0 7 34 192 219 188 225 0.89 # 9787 # 11826 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_7 - 1757 AAA_19 PF13245.1 76 1.7e-07 23.8 2.0 1 1 1.1e-08 5.1e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 4281 # 9551 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_33 - 123 AAA_19 PF13245.1 76 0.00061 12.3 0.0 1 1 2.2e-05 0.00097 11.7 0.0 13 37 91 115 82 122 0.78 # 31239 # 31607 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 1_33 - 123 KTI12 PF08433.5 270 0.00076 11.4 0.1 1 1 1.4e-05 0.0013 10.7 0.1 5 30 92 117 91 120 0.87 # 31239 # 31607 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_18 - 228 MethyltransfD12 PF02086.10 260 0.00039 12.6 0.0 1 2 0.021 1.9 0.6 0.0 175 188 18 31 10 39 0.85 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_18 - 228 MethyltransfD12 PF02086.10 260 0.00039 12.6 0.0 2 2 4e-05 0.0036 9.5 0.0 20 46 163 189 148 197 0.78 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_5 - 283 TIGR00573 TIGR00573 217 2.7e-13 42.3 0.0 1 1 5.1e-15 4.6e-13 41.6 0.0 12 181 107 274 103 281 0.79 # 3134 # 3982 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 2_28 - 188 Methyltransf_26 PF13659.1 117 2.5e-14 46.1 0.0 1 1 9e-16 4e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 22031 # 22594 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_18 - 228 Methyltransf_26 PF13659.1 117 2.4e-12 39.7 0.1 1 2 1.3e-07 5.7e-06 19.1 0.0 54 114 4 71 2 75 0.72 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_18 - 228 Methyltransf_26 PF13659.1 117 2.4e-12 39.7 0.1 2 2 2e-07 9.2e-06 18.5 0.0 4 44 167 206 164 222 0.82 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_12 - 1588 Zeta_toxin PF06414.7 201 0.00051 11.9 0.0 1 1 2.8e-05 0.0013 10.6 0.0 14 56 224 267 215 305 0.84 # 7636 # 12399 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_9 - 680 Zeta_toxin PF06414.7 201 0.00069 11.5 0.0 1 1 6.4e-05 0.0029 9.5 0.0 21 49 190 219 182 236 0.85 # 9787 # 11826 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_7 - 1757 AAA_30 PF13604.1 196 1.6e-44 144.6 15.6 1 3 0.04 1.8 0.8 0.0 41 86 223 269 218 282 0.84 # 4281 # 9551 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_7 - 1757 AAA_30 PF13604.1 196 1.6e-44 144.6 15.6 2 3 1.9e-05 0.00086 11.6 3.9 7 146 420 551 416 561 0.81 # 4281 # 9551 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_7 - 1757 AAA_30 PF13604.1 196 1.6e-44 144.6 15.6 3 3 9.9e-44 4.4e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 4281 # 9551 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_9 - 680 AAA_30 PF13604.1 196 0.00051 12.4 0.0 1 1 2.4e-05 0.0011 11.4 0.0 21 57 188 224 180 230 0.85 # 9787 # 11826 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 2_12 - 254 SMC_N PF02463.14 220 2.8e-07 22.7 0.1 1 1 1.1e-08 9.6e-07 21.0 0.1 27 187 31 185 14 212 0.76 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_9 - 680 TraG-D_C PF12696.2 128 6.1e-21 67.4 0.0 1 1 1.2e-22 1.1e-20 66.6 0.0 1 127 419 541 419 542 0.86 # 9787 # 11826 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 2_18 - 228 UPF0020 PF01170.13 180 5.3e-06 18.8 0.0 1 2 0.00013 0.012 7.9 0.0 102 117 16 31 6 77 0.84 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_18 - 228 UPF0020 PF01170.13 180 5.3e-06 18.8 0.0 2 2 6.3e-05 0.0057 9.0 0.0 28 54 163 189 158 220 0.67 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_28 - 188 Methyltransf_25 PF13649.1 101 0.0001 15.5 0.0 1 1 1.7e-06 0.00015 14.9 0.0 1 101 54 142 54 142 0.81 # 22031 # 22594 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_10 - 421 DDE_Tnp_1 PF01609.16 213 7.2e-35 113.2 0.2 1 1 1.7e-36 1.5e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 7299 # 8561 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_35 - 484 DivIC PF04977.10 80 0.00084 11.6 4.6 1 1 1.9e-05 0.0017 10.7 4.6 17 66 76 124 72 125 0.92 # 32102 # 33553 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.578 2_12 - 254 AAA_21 PF13304.1 303 1.9e-13 43.7 0.0 1 2 9.3e-09 8.3e-07 21.9 0.0 4 25 33 56 31 81 0.80 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_12 - 254 AAA_21 PF13304.1 303 1.9e-13 43.7 0.0 2 2 4.1e-08 3.7e-06 19.8 0.0 235 285 137 184 112 202 0.92 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 3_12 - 1588 AAA PF00004.24 132 6.5e-05 15.9 0.0 1 1 3.9e-06 0.00018 14.5 0.0 1 94 229 318 229 343 0.70 # 7636 # 12399 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_12 - 254 AAA PF00004.24 132 0.00022 14.2 0.0 1 1 1e-05 0.00046 13.2 0.0 3 37 33 69 31 240 0.85 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 3_7 - 653 KorB PF08535.5 93 1.6e-05 17.8 0.0 1 1 6.1e-07 5.5e-05 16.1 0.0 2 43 152 193 151 202 0.93 # 3656 # 5614 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 2_18 - 228 N6_N4_Mtase PF01555.13 231 2.2e-35 114.9 0.0 1 1 1.1e-34 9.7e-33 106.3 0.0 1 228 21 200 21 203 0.88 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_17 - 321 Hydantoinase_A PF01968.13 290 1e-08 27.4 0.1 1 3 0.063 5.7 -1.4 0.0 156 175 132 151 112 156 0.77 # 14149 # 15111 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_17 - 321 Hydantoinase_A PF01968.13 290 1e-08 27.4 0.1 2 3 2.4e-06 0.00022 13.1 0.0 68 97 156 183 149 192 0.81 # 14149 # 15111 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 2_17 - 321 Hydantoinase_A PF01968.13 290 1e-08 27.4 0.1 3 3 8.3e-06 0.00074 11.4 0.0 214 265 242 297 198 307 0.78 # 14149 # 15111 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 1_9 - 680 AAA_16 PF13191.1 185 3.1e-06 20.0 0.0 1 1 7.2e-07 1.6e-05 17.7 0.0 21 60 182 222 179 264 0.81 # 9787 # 11826 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 2_12 - 254 AAA_16 PF13191.1 185 1e-05 18.4 1.6 1 1 1.5e-06 3.3e-05 16.7 1.6 23 83 27 79 18 199 0.64 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 3_12 - 1588 AAA_16 PF13191.1 185 0.00014 14.7 0.0 1 1 2.7e-05 0.0006 12.6 0.0 10 58 217 259 210 315 0.71 # 7636 # 12399 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_33 - 123 AAA_16 PF13191.1 185 0.0012 11.6 0.1 1 1 9.1e-05 0.0021 10.8 0.1 22 48 86 112 80 119 0.88 # 31239 # 31607 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 3_12 - 1588 AAA_22 PF13401.1 131 9.7e-06 18.5 0.3 1 1 1.6e-06 7.1e-05 15.7 0.3 3 98 225 300 220 335 0.68 # 7636 # 12399 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_12 - 254 AAA_22 PF13401.1 131 0.00054 12.9 0.1 1 1 2.7e-05 0.0012 11.7 0.1 9 69 33 139 28 223 0.65 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_12 - 254 AAA_29 PF13555.1 62 0.00013 14.3 0.0 1 1 3.6e-06 0.00032 13.0 0.0 17 40 23 45 17 57 0.82 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_13 - 941 Orn_Arg_deC_N PF02784.11 251 0.00091 11.2 0.0 1 1 1e-05 0.00091 11.2 0.0 171 212 610 650 598 684 0.76 # 14098 # 16920 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.512 2_12 - 254 AAA_28 PF13521.1 163 0.00073 12.3 0.0 1 1 1.3e-05 0.0012 11.6 0.0 4 39 33 75 30 100 0.75 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_5 - 283 RNase_H_2 PF13482.1 164 3.4e-05 16.5 0.0 1 1 2.9e-06 0.00026 13.6 0.0 1 117 105 246 105 258 0.59 # 3134 # 3982 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 2_10 - 421 DDE_Tnp_1_4 PF13701.1 449 2.9e-27 87.6 3.5 1 2 0.0052 0.46 1.2 0.0 11 42 5 36 3 62 0.72 # 7299 # 8561 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 2_10 - 421 DDE_Tnp_1_4 PF13701.1 449 2.9e-27 87.6 3.5 2 2 1.5e-28 1.3e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 7299 # 8561 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 3_7 - 653 HTH_23 PF13384.1 50 4.4e-07 22.3 0.3 1 2 7.2e-08 6.5e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 3656 # 5614 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 3_7 - 653 HTH_23 PF13384.1 50 4.4e-07 22.3 0.3 2 2 0.055 4.9 -0.2 0.0 2 20 500 518 499 519 0.87 # 3656 # 5614 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_9 - 680 zf-DHHC PF01529.15 174 0.0011 11.1 9.0 1 2 0.0038 0.34 3.0 4.1 90 164 27 144 20 154 0.74 # 9787 # 11826 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_9 - 680 zf-DHHC PF01529.15 174 0.0011 11.1 9.0 2 2 2.9e-05 0.0026 9.9 0.2 18 68 569 667 454 669 0.83 # 9787 # 11826 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 3_12 - 1588 NB-ARC PF00931.17 287 6.3e-06 17.9 0.4 1 1 3.5e-07 3.1e-05 15.6 0.4 9 50 216 254 209 349 0.71 # 7636 # 12399 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_12 - 254 CutC PF03932.9 202 0.0001 14.3 0.0 1 1 2e-06 0.00018 13.5 0.0 95 155 164 224 145 243 0.89 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 3_7 - 653 HTH_29 PF13551.1 112 0.00021 14.2 0.0 1 1 1.1e-05 0.00095 12.1 0.0 4 37 145 178 142 221 0.84 # 3656 # 5614 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 2_28 - 188 Met_10 PF02475.11 200 0.0004 12.7 0.0 1 1 5.8e-06 0.00052 12.4 0.0 99 189 48 132 29 145 0.79 # 22031 # 22594 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_5 - 283 DNA_pol_A_exo1 PF01612.15 176 1.3e-05 17.5 0.0 1 1 4.6e-07 4.2e-05 15.8 0.0 20 95 102 196 85 211 0.79 # 3134 # 3982 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 2_28 - 188 Methyltransf_31 PF13847.1 152 5.8e-07 22.0 0.0 1 1 7.9e-09 7.1e-07 21.7 0.0 5 118 52 156 48 183 0.83 # 22031 # 22594 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 3_12 - 1588 Arch_ATPase PF01637.13 234 3.7e-06 19.5 3.0 1 1 9.6e-08 4.3e-06 19.3 0.3 3 83 211 306 210 354 0.66 # 7636 # 12399 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_12 - 254 Arch_ATPase PF01637.13 234 0.00045 12.7 0.0 1 1 1.4e-05 0.00063 12.2 0.0 25 44 33 52 26 128 0.82 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_12 - 254 AAA_5 PF07728.9 139 0.00035 13.1 0.2 1 2 1.6e-05 0.0014 11.1 0.1 4 23 33 52 30 126 0.76 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_12 - 254 AAA_5 PF07728.9 139 0.00035 13.1 0.2 2 2 0.058 5.2 -0.4 0.0 19 48 149 178 140 214 0.66 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_9 - 680 TrwB_AAD_bind PF10412.4 386 2.7e-150 493.0 0.0 1 1 7.2e-152 3.3e-150 492.7 0.0 2 386 172 561 171 561 0.99 # 9787 # 11826 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_27 - 877 TrwB_AAD_bind PF10412.4 386 1.3e-07 23.2 0.1 1 2 4.8e-08 2.2e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 26070 # 28700 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_27 - 877 TrwB_AAD_bind PF10412.4 386 1.3e-07 23.2 0.1 2 2 0.012 0.53 1.5 0.0 261 317 714 770 672 773 0.93 # 26070 # 28700 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_12 - 1588 AAA_18 PF13238.1 129 0.00014 14.9 0.1 1 1 1.4e-05 0.0012 11.9 0.1 1 106 229 353 229 368 0.76 # 7636 # 12399 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_12 - 254 TIGR00611 TIGR00611 365 0.00021 12.9 0.0 1 2 0.00012 0.01 7.3 0.0 27 66 32 72 18 108 0.64 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_12 - 254 TIGR00611 TIGR00611 365 0.00021 12.9 0.0 2 2 0.0014 0.12 3.8 0.0 306 340 160 193 127 213 0.79 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_18 - 228 Methyltransf_15 PF09445.5 164 0.00017 13.9 0.0 1 2 0.008 0.72 2.1 0.0 53 79 4 29 2 33 0.92 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_18 - 228 Methyltransf_15 PF09445.5 164 0.00017 13.9 0.0 2 2 4.3e-05 0.0039 9.5 0.0 3 31 166 194 164 208 0.86 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_28 - 188 Methyltransf_12 PF08242.7 99 1.2e-05 18.5 0.0 1 1 2e-07 1.8e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 22031 # 22594 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 3_12 - 1588 DUF258 PF03193.11 161 4.1e-05 15.6 0.0 1 1 2.5e-06 0.00011 14.1 0.0 14 62 204 253 191 264 0.81 # 7636 # 12399 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_12 - 254 DUF258 PF03193.11 161 0.00012 14.0 0.0 1 1 3.8e-06 0.00017 13.5 0.0 26 62 18 55 2 95 0.77 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_5 - 283 TIGR01406 TIGR01406 231 1.3e-16 53.3 0.0 1 1 3.1e-18 2.8e-16 52.2 0.0 4 168 106 266 104 280 0.75 # 3134 # 3982 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_27 - 877 DUF87 PF01935.12 229 2.1e-07 23.7 0.0 1 1 6.9e-09 6.2e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 26070 # 28700 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_28 - 188 TIGR03533 TIGR03533 284 2e-05 16.4 0.0 1 1 3.5e-07 3.1e-05 15.8 0.0 116 210 45 133 37 141 0.87 # 22031 # 22594 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_28 - 188 TIGR03534 TIGR03534 253 3e-08 25.8 0.0 1 1 3.9e-10 3.5e-08 25.6 0.0 81 175 45 131 12 148 0.86 # 22031 # 22594 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_5 - 283 TIGR01298 TIGR01298 200 1.5e-05 17.2 1.1 1 1 1.5e-06 0.00013 14.2 1.1 98 189 172 267 97 275 0.77 # 3134 # 3982 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 3_12 - 1588 Miro PF08477.8 119 0.00015 15.0 0.1 1 1 1.1e-05 0.00051 13.3 0.1 2 44 229 270 227 302 0.73 # 7636 # 12399 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_12 - 254 Miro PF08477.8 119 0.00021 14.6 0.0 1 1 9.2e-06 0.00041 13.6 0.0 2 26 31 64 30 133 0.69 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_7 - 1757 UvrD_C_2 PF13538.1 104 1.2e-07 24.7 0.7 1 2 0.013 1.2 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 4281 # 9551 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_7 - 1757 UvrD_C_2 PF13538.1 104 1.2e-07 24.7 0.7 2 2 5.2e-08 4.7e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 4281 # 9551 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_28 - 188 TIGR00755 TIGR00755 256 4.2e-09 28.5 0.0 1 1 6.2e-11 5.6e-09 28.1 0.0 8 105 29 123 25 134 0.90 # 22031 # 22594 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_17 - 321 StbA PF06406.6 318 2.3e-156 512.3 1.3 1 1 2.8e-158 2.5e-156 512.2 1.3 1 317 1 317 1 318 0.99 # 14149 # 15111 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.390 1_9 - 680 AAA_17 PF13207.1 121 0.00027 14.5 0.0 1 1 1.1e-05 0.00097 12.7 0.0 3 27 189 217 187 262 0.68 # 9787 # 11826 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 2_12 - 254 TIGR02211 TIGR02211 221 2.2e-34 111.3 0.1 1 1 1e-35 4.6e-34 110.3 0.1 18 219 15 213 5 215 0.82 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_4 - 94 TIGR02211 TIGR02211 221 0.00014 13.9 0.0 1 1 3.3e-06 0.00015 13.8 0.0 121 167 22 72 2 87 0.79 # 2807 # 3088 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 2_12 - 254 AAA_25 PF13481.1 194 0.00024 13.3 0.2 1 1 5.3e-06 0.00048 12.3 0.1 29 56 24 51 11 130 0.74 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00034 12.9 0.0 1 2 0.00014 0.013 7.8 0.0 1 118 988 1121 988 1212 0.52 # 4281 # 9551 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00034 12.9 0.0 2 2 0.0066 0.59 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 4281 # 9551 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_12 - 254 AAA_15 PF13175.1 415 0.00087 11.1 0.2 1 2 0.0024 0.22 3.2 0.0 27 42 33 48 14 87 0.86 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_12 - 254 AAA_15 PF13175.1 415 0.00087 11.1 0.2 2 2 0.0004 0.036 5.8 0.4 373 397 160 184 149 192 0.89 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_27 - 877 Pox_A32 PF04665.7 241 0.00066 11.7 0.1 1 1 2.3e-05 0.0021 10.1 0.0 7 38 474 505 470 520 0.85 # 26070 # 28700 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_12 - 1588 AAA_14 PF13173.1 128 0.00026 13.7 0.2 1 1 5.8e-06 0.00026 13.7 0.2 2 101 226 333 225 340 0.72 # 7636 # 12399 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_12 - 254 AAA_14 PF13173.1 128 0.00081 12.1 0.0 1 1 9.2e-05 0.0041 9.8 0.0 4 48 30 72 27 93 0.69 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_12 - 254 AAA_33 PF13671.1 143 0.00043 12.9 0.0 1 1 1.7e-05 0.0016 11.1 0.0 4 33 33 99 31 199 0.55 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 2_12 - 254 SbcCD_C PF13558.1 90 0.00031 13.4 0.0 1 1 3.6e-05 0.0032 10.2 0.0 32 89 138 182 122 183 0.73 # 10149 # 10910 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.604 1_9 - 680 T4SS-DNA_transf PF02534.9 469 5.5e-10 31.1 0.0 1 1 3.2e-11 1.5e-09 29.7 0.0 264 361 382 476 198 500 0.82 # 9787 # 11826 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_27 - 877 T4SS-DNA_transf PF02534.9 469 0.00036 11.9 0.0 1 2 0.0047 0.21 2.8 0.0 105 182 534 605 471 624 0.82 # 26070 # 28700 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_27 - 877 T4SS-DNA_transf PF02534.9 469 0.00036 11.9 0.0 2 2 0.00028 0.013 6.8 0.0 319 378 712 770 662 772 0.89 # 26070 # 28700 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_28 - 188 MTS PF05175.9 170 8e-10 31.1 0.0 1 1 1.2e-11 1.1e-09 30.6 0.0 31 141 50 149 41 165 0.84 # 22031 # 22594 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_7 - 495 DDE_Tnp_1_5 PF13737.1 112 2.3e-47 152.6 0.0 1 1 5.4e-49 4.9e-47 151.5 0.0 1 112 19 130 19 130 0.96 # 4610 # 6094 # -1 # ID=2_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.512 2_5 - 283 RNase_T PF00929.19 164 3.2e-24 78.8 0.0 1 1 4.6e-26 4.1e-24 78.4 0.0 1 163 105 262 105 263 0.95 # 3134 # 3982 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_27 - 877 AAA_10 PF12846.2 304 1.7e-49 161.6 0.0 1 1 6.7e-51 3e-49 160.8 0.0 1 294 480 769 480 775 0.89 # 26070 # 28700 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_9 - 680 AAA_10 PF12846.2 304 1e-10 34.2 0.0 1 1 5e-11 2.3e-09 29.8 0.0 3 296 187 494 186 500 0.68 # 9787 # 11826 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 2_28 - 188 RrnaAD PF00398.15 262 8.4e-09 27.5 0.0 1 1 1.2e-10 1.1e-08 27.2 0.0 9 113 29 128 24 148 0.88 # 22031 # 22594 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_28 - 188 Methyltransf_18 PF12847.2 112 2.6e-10 33.7 0.0 1 1 6.3e-12 5.6e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 22031 # 22594 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_18 - 228 Methyltransf_11 PF08241.7 95 0.00033 13.9 0.1 1 3 0.061 5.5 0.4 0.0 55 65 15 25 2 28 0.73 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_18 - 228 Methyltransf_11 PF08241.7 95 0.00033 13.9 0.1 2 3 0.0053 0.47 3.8 0.0 79 93 54 68 42 70 0.85 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_18 - 228 Methyltransf_11 PF08241.7 95 0.00033 13.9 0.1 3 3 0.0014 0.12 5.7 0.0 5 54 172 220 168 226 0.82 # 15627 # 16310 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_7 - 1757 AAA_11 PF13086.1 236 0.00019 13.8 0.0 1 1 2.1e-06 0.00019 13.8 0.0 2 75 969 1039 968 1059 0.81 # 4281 # 9551 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 3_17 - 174 SSB PF00436.20 104 2.5e-41 132.6 0.3 1 1 4.1e-43 3.6e-41 132.0 0.3 1 101 6 109 6 112 0.96 # 17868 # 18389 # -1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/461e1975-bc36-4d00-9304-c30f3e827739 # Target file: checkm_output/bins/pm500/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm500/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/461e1975-bc36-4d00-9304-c30f3e827739 checkm_output/bins/pm500/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:07:39 2017 # [ok]