# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.6 0.0 1 2 0.00039 0.036 6.2 0.0 112 146 18 54 9 81 0.65 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_24 - 228 Cons_hypoth95 PF03602.10 183 1.1e-05 17.6 0.0 2 2 4e-05 0.0036 9.4 0.0 41 62 162 183 145 218 0.78 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_58 - 383 ABC_tran PF00005.22 137 1.9e-05 17.7 0.0 1 1 8.1e-07 3.7e-05 16.8 0.0 15 37 161 183 150 212 0.84 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_48 - 503 ABC_tran PF00005.22 137 0.00032 13.8 0.0 1 1 1.2e-05 0.00056 13.0 0.0 12 37 230 255 224 364 0.90 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_24 - 228 TIGR00095 TIGR00095 194 0.00027 13.1 0.0 1 2 0.0015 0.14 4.3 0.0 123 138 19 34 8 78 0.75 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_24 - 228 TIGR00095 TIGR00095 194 0.00027 13.1 0.0 2 2 0.00024 0.022 6.8 0.0 53 86 164 199 155 218 0.77 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_28 - 424 HHH_5 PF14520.1 60 0.00029 13.8 0.0 1 1 8.5e-06 0.00077 12.5 0.0 9 37 184 212 172 229 0.92 # 21140 # 22411 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_65 - 238 AAA_27 PF13514.1 1111 0.00032 11.2 2.7 1 1 4.5e-06 0.00041 10.8 2.7 316 391 97 171 94 182 0.90 # 59154 # 59867 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.591 1_58 - 383 Sigma54_activat PF00158.21 168 0.00059 12.1 0.0 1 1 1.3e-05 0.0012 11.2 0.0 26 47 161 182 145 193 0.84 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_58 - 383 FtsK_SpoIIIE PF01580.13 205 0.00064 12.0 0.0 1 1 1.2e-05 0.0011 11.2 0.0 40 60 159 179 128 231 0.80 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_29 - 209 MobB PF03205.9 140 5.2e-05 15.8 0.1 1 1 1.6e-06 0.00015 14.3 0.0 10 42 11 41 1 46 0.79 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_83 - 227 HTH_39 PF14090.1 70 1.8e-07 23.4 0.0 1 1 5.6e-09 5.1e-07 21.9 0.0 8 67 167 226 162 226 0.91 # 73656 # 74336 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_12 - 199 TilS_C PF11734.3 74 0.00016 13.7 0.0 1 1 5.1e-06 0.00047 12.2 0.0 29 45 7 23 6 28 0.88 # 9685 # 10281 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_48 - 503 AAA_19 PF13245.1 76 1e-06 21.2 0.0 1 1 5.8e-08 2.6e-06 19.9 0.0 1 36 219 255 219 272 0.76 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_29 - 209 AAA_19 PF13245.1 76 0.00026 13.5 0.1 1 2 0.00019 0.0088 8.6 0.0 20 48 11 35 9 44 0.84 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_29 - 209 AAA_19 PF13245.1 76 0.00026 13.5 0.1 2 2 0.021 0.97 2.1 0.0 42 63 135 158 118 184 0.76 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_29 - 209 CbiA PF01656.18 195 1.6e-22 72.6 0.0 1 1 3.1e-24 2.8e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_24 - 228 MethyltransfD12 PF02086.10 260 0.00039 12.6 0.0 1 2 0.015 1.4 1.0 0.0 175 188 18 31 8 92 0.82 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_24 - 228 MethyltransfD12 PF02086.10 260 0.00039 12.6 0.0 2 2 4e-05 0.0036 9.5 0.0 20 46 163 189 148 197 0.78 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_29 - 209 YhjQ PF06564.7 244 2.1e-05 16.7 0.3 1 2 1.8e-06 0.00016 13.8 0.3 4 38 3 37 1 50 0.89 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_29 - 209 YhjQ PF06564.7 244 2.1e-05 16.7 0.3 2 2 0.029 2.7 0.0 0.0 108 144 69 103 44 113 0.78 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_58 - 383 AAA_23 PF13476.1 202 1.6e-05 18.1 0.0 1 1 6.7e-07 3e-05 17.1 0.0 20 46 158 185 144 219 0.81 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_48 - 503 AAA_23 PF13476.1 202 6.9e-05 16.0 0.0 1 1 2.9e-06 0.00013 15.1 0.0 20 37 230 247 225 262 0.90 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_24 - 228 Methyltransf_26 PF13659.1 117 5.9e-12 38.5 0.1 1 2 1.5e-07 1.4e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_24 - 228 Methyltransf_26 PF13659.1 117 5.9e-12 38.5 0.1 2 2 9.7e-08 8.8e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_48 - 503 Zeta_toxin PF06414.7 201 0.00076 11.4 0.0 1 1 1.4e-05 0.0013 10.6 0.0 18 39 231 252 216 259 0.79 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_48 - 503 AAA_30 PF13604.1 196 6.1e-09 28.5 0.0 1 1 1.2e-10 1.1e-08 27.6 0.0 2 45 213 256 212 263 0.92 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_12 - 199 TIGR02433 TIGR02433 47 0.00021 13.2 0.1 1 1 7.7e-06 0.0007 11.6 0.0 30 45 8 23 7 25 0.91 # 9685 # 10281 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_88 - 768 TraG-D_C PF12696.2 128 4.5e-08 25.8 0.2 1 1 5e-10 4.5e-08 25.8 0.2 1 90 437 525 437 558 0.83 # 79058 # 81361 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_29 - 209 MipZ PF09140.6 261 1.7e-21 69.2 0.5 1 2 1.2e-12 1.1e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_29 - 209 MipZ PF09140.6 261 1.7e-21 69.2 0.5 2 2 1.6e-12 1.4e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_24 - 228 UPF0020 PF01170.13 180 1e-05 17.9 0.0 1 2 0.00026 0.024 7.0 0.0 103 123 17 37 4 88 0.71 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_24 - 228 UPF0020 PF01170.13 180 1e-05 17.9 0.0 2 2 6.2e-05 0.0056 9.0 0.0 28 54 163 189 158 221 0.67 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_15 - 653 KorB PF08535.5 93 2.4e-05 17.2 0.0 1 1 8.2e-07 7.5e-05 15.7 0.0 2 43 152 193 151 204 0.93 # 11483 # 13441 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 1_29 - 209 TIGR00064 TIGR00064 279 0.00021 13.0 0.5 1 2 0.00073 0.066 4.8 0.1 89 116 11 38 1 45 0.88 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_29 - 209 TIGR00064 TIGR00064 279 0.00021 13.0 0.5 2 2 0.00024 0.022 6.4 0.0 153 175 68 90 60 99 0.82 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_24 - 228 N6_N4_Mtase PF01555.13 231 4.4e-37 120.5 0.0 1 2 8.3e-16 7.6e-14 44.5 0.0 1 114 21 124 21 139 0.88 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_24 - 228 N6_N4_Mtase PF01555.13 231 4.4e-37 120.5 0.0 2 2 5.3e-25 4.8e-23 74.6 0.0 169 228 141 200 126 203 0.90 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_48 - 503 AAA_16 PF13191.1 185 2.9e-05 16.9 0.0 1 1 1.1e-06 5.1e-05 16.1 0.0 13 52 222 263 216 369 0.84 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_58 - 383 AAA_16 PF13191.1 185 3.2e-05 16.7 0.1 1 1 2e-06 9.2e-05 15.2 0.1 25 62 158 192 148 338 0.76 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_58 - 383 AAA_22 PF13401.1 131 3.4e-06 20.0 0.0 1 1 1.5e-07 6.9e-06 19.0 0.0 3 48 156 198 153 233 0.77 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_48 - 503 AAA_22 PF13401.1 131 4.7e-06 19.6 0.0 1 1 2e-07 9.1e-06 18.6 0.0 4 49 229 281 225 330 0.84 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_4 - 283 Methyltransf_27 PF13708.1 194 1.5e-66 216.4 0.0 1 1 2.3e-68 2.1e-66 215.9 0.0 2 194 85 278 84 278 0.96 # 3776 # 4624 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_48 - 503 AAA_29 PF13555.1 62 1.5e-05 17.3 0.0 1 1 7.9e-07 3.6e-05 16.1 0.0 20 40 227 246 219 255 0.84 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_58 - 383 AAA_29 PF13555.1 62 2e-05 16.9 0.0 1 1 1.1e-06 4.9e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_29 - 209 SRP54 PF00448.17 196 2.2e-07 23.2 0.1 1 1 1.5e-08 1.4e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_5 - 84 HTH_3 PF01381.17 55 2.6e-05 16.9 0.0 1 2 1e-06 9.2e-05 15.1 0.0 1 34 6 39 6 45 0.90 # 5205 # 5456 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_5 - 84 HTH_3 PF01381.17 55 2.6e-05 16.9 0.0 2 2 0.083 7.6 -0.7 0.0 39 52 67 80 65 83 0.66 # 5205 # 5456 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_48 - 503 Rad17 PF03215.10 519 0.0011 10.4 0.0 1 1 1.8e-05 0.0017 9.8 0.0 42 69 226 253 217 264 0.81 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_15 - 653 HTH_23 PF13384.1 50 2.2e-08 26.4 0.0 1 2 1.4e-08 6.5e-07 21.7 0.0 13 40 149 176 143 181 0.92 # 11483 # 13441 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 1_15 - 653 HTH_23 PF13384.1 50 2.2e-08 26.4 0.0 2 2 0.057 2.6 0.7 0.0 3 20 501 518 499 520 0.89 # 11483 # 13441 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 1_5 - 84 HTH_23 PF13384.1 50 3.3e-05 16.3 0.3 1 2 7e-06 0.00032 13.2 0.1 17 33 14 30 6 38 0.86 # 5205 # 5456 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_5 - 84 HTH_23 PF13384.1 50 3.3e-05 16.3 0.3 2 2 0.048 2.2 1.0 0.0 5 22 63 82 59 83 0.75 # 5205 # 5456 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_29 - 209 Fer4_NifH PF00142.13 273 6.7e-05 14.9 0.2 1 1 2.3e-06 0.00021 13.3 0.0 8 38 9 39 2 46 0.89 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_5 - 84 HTH_19 PF12844.2 64 7.1e-05 15.6 0.0 1 1 1.2e-06 0.00011 15.1 0.0 7 53 9 56 5 67 0.87 # 5205 # 5456 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_5 - 84 DUF1870 PF08965.5 118 0.00027 13.4 1.2 1 1 3.7e-06 0.00034 13.1 1.2 1 75 1 78 1 81 0.69 # 5205 # 5456 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_58 - 383 NB-ARC PF00931.17 287 0.00027 12.6 0.0 1 2 9.7e-06 0.00089 10.9 0.0 18 49 156 185 145 192 0.81 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_58 - 383 NB-ARC PF00931.17 287 0.00027 12.6 0.0 2 2 0.069 6.3 -1.7 0.0 208 236 331 357 326 367 0.70 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_15 - 653 HTH_29 PF13551.1 112 0.00017 14.5 0.0 1 1 5.9e-06 0.00054 12.9 0.0 4 37 145 178 142 234 0.85 # 11483 # 13441 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 1_88 - 768 TrwB_AAD_bind PF10412.4 386 4.9e-07 21.4 0.2 1 2 0.00021 0.019 6.3 0.0 11 32 132 153 126 164 0.80 # 79058 # 81361 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_88 - 768 TrwB_AAD_bind PF10412.4 386 4.9e-07 21.4 0.2 2 2 2.5e-06 0.00023 12.6 0.1 260 332 452 525 435 578 0.75 # 79058 # 81361 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_29 - 209 TIGR01968 TIGR01968 261 1.5e-11 36.5 0.8 1 2 6.4e-11 5.8e-09 28.1 0.5 3 39 2 38 1 42 0.97 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_29 - 209 TIGR01968 TIGR01968 261 1.5e-11 36.5 0.8 2 2 0.00018 0.017 6.9 0.0 100 135 65 100 60 149 0.83 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_58 - 383 AAA_18 PF13238.1 129 9.7e-05 15.5 0.0 1 1 3.9e-06 0.00018 14.6 0.0 2 38 161 193 161 238 0.71 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_48 - 503 AAA_18 PF13238.1 129 0.001 12.1 0.1 1 1 5.3e-05 0.0024 11.0 0.1 1 18 232 249 232 267 0.87 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_28 - 424 IMS_HHH PF11798.3 32 4.2e-09 28.9 0.3 1 1 1.3e-10 1.2e-08 27.5 0.3 3 32 172 201 170 201 0.93 # 21140 # 22411 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_24 - 228 Methyltransf_15 PF09445.5 164 0.0007 11.9 0.0 1 2 0.042 3.8 -0.2 0.0 53 79 4 29 2 33 0.90 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_24 - 228 Methyltransf_15 PF09445.5 164 0.0007 11.9 0.0 2 2 4.2e-05 0.0039 9.5 0.0 3 31 166 194 164 209 0.86 # 18070 # 18753 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_88 - 768 DUF87 PF01935.12 229 0.00041 12.9 0.0 1 1 5e-05 0.0023 10.5 0.0 16 40 130 153 120 168 0.80 # 79058 # 81361 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_58 - 383 DUF87 PF01935.12 229 0.0005 12.7 0.0 1 1 2.1e-05 0.00096 11.8 0.0 28 46 162 180 161 192 0.87 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_3 - 112 HTH_12 PF08461.5 66 0.00041 12.9 0.4 1 1 7.8e-06 0.00071 12.1 0.3 20 52 58 90 47 102 0.87 # 3355 # 3690 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_48 - 503 DEAD PF00270.24 169 0.00097 11.4 0.0 1 1 1.6e-05 0.0015 10.8 0.0 3 39 216 254 214 340 0.82 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_5 - 84 HTH_31 PF13560.1 64 5.8e-07 22.5 2.0 1 2 1e-08 9.1e-07 21.9 1.2 3 43 3 43 2 57 0.86 # 5205 # 5456 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_5 - 84 HTH_31 PF13560.1 64 5.8e-07 22.5 2.0 2 2 0.1 9.1 -0.6 0.0 17 34 65 72 44 82 0.58 # 5205 # 5456 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_48 - 503 T2SE PF00437.15 272 2.5e-38 124.2 0.0 1 1 8.5e-40 3.8e-38 123.6 0.0 66 269 161 378 143 381 0.87 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_58 - 383 T2SE PF00437.15 272 6.9e-35 112.9 0.0 1 1 2.2e-36 9.8e-35 112.5 0.0 111 261 144 292 23 309 0.79 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_58 - 383 NACHT PF05729.7 166 0.00059 12.3 0.0 1 1 1.4e-05 0.0013 11.2 0.0 4 30 161 187 159 193 0.82 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_29 - 209 AAA_17 PF13207.1 121 1.4e-05 18.7 0.0 1 1 1.2e-06 3.7e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_48 - 503 AAA_17 PF13207.1 121 4.9e-05 16.9 0.0 1 1 4.1e-06 0.00012 15.6 0.0 1 32 231 264 231 361 0.79 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_58 - 383 AAA_17 PF13207.1 121 0.00036 14.2 0.0 1 1 2.7e-05 0.00083 13.0 0.0 3 22 161 180 161 245 0.81 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_58 - 383 AAA_25 PF13481.1 194 7.8e-06 18.2 0.0 1 1 4.2e-07 1.3e-05 17.4 0.0 21 55 146 179 127 219 0.78 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_29 - 209 AAA_25 PF13481.1 194 0.00011 14.4 0.1 1 1 9.3e-06 0.00028 13.1 0.0 42 87 10 44 3 90 0.78 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_48 - 503 AAA_25 PF13481.1 194 0.00013 14.2 0.0 1 1 1.1e-05 0.00033 12.8 0.0 19 64 214 260 202 276 0.79 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_48 - 503 AAA_14 PF13173.1 128 0.001 11.8 0.0 1 1 2.2e-05 0.002 10.8 0.0 3 30 230 255 228 267 0.86 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_29 - 209 VirC1 PF07015.6 231 3.1e-09 29.0 0.0 1 1 7.1e-11 6.5e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_48 - 503 AAA_33 PF13671.1 143 0.00063 12.4 0.0 1 1 1.6e-05 0.0015 11.2 0.0 1 19 231 249 231 333 0.71 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_58 - 383 RNA_helicase PF00910.17 107 4.9e-05 16.3 0.0 1 1 1e-06 9.5e-05 15.4 0.0 2 33 161 190 160 201 0.82 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_38 - 214 TIGR00922 TIGR00922 172 0.0002 13.7 0.0 1 1 2.6e-06 0.00023 13.5 0.0 54 104 105 155 56 176 0.87 # 30390 # 31031 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 1_73 - 1015 AAA_10 PF12846.2 304 1.6e-31 102.5 0.0 1 1 2.6e-32 4.7e-31 101.0 0.0 8 303 502 898 498 899 0.92 # 63417 # 66461 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.580 1_88 - 768 AAA_10 PF12846.2 304 7.9e-07 21.5 0.2 1 1 8.8e-08 1.6e-06 20.5 0.2 2 292 137 506 136 516 0.68 # 79058 # 81361 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_58 - 383 AAA_10 PF12846.2 304 1.8e-05 17.0 0.2 1 2 1.7e-05 0.00032 12.9 0.1 3 22 159 178 157 187 0.85 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_58 - 383 AAA_10 PF12846.2 304 1.8e-05 17.0 0.2 2 2 0.017 0.32 3.1 0.0 178 247 256 347 173 352 0.54 # 50203 # 51351 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_29 - 209 AAA_10 PF12846.2 304 0.00014 14.1 0.0 1 1 1.3e-05 0.00023 13.4 0.0 11 39 11 39 3 66 0.90 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_48 - 503 AAA_10 PF12846.2 304 0.00051 12.2 0.0 1 1 4.2e-05 0.00076 11.7 0.0 4 28 232 256 229 362 0.77 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_29 - 209 ArsA_ATPase PF02374.10 305 4e-08 25.4 0.9 1 3 1.2e-09 1.1e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_29 - 209 ArsA_ATPase PF02374.10 305 4e-08 25.4 0.9 2 3 0.053 4.9 -1.2 0.0 121 135 69 85 47 86 0.75 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_29 - 209 ArsA_ATPase PF02374.10 305 4e-08 25.4 0.9 3 3 0.075 6.9 -1.7 0.0 205 234 132 161 118 202 0.65 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_29 - 209 AAA_31 PF13614.1 157 3.9e-06 19.6 0.0 1 2 2.5e-07 2.3e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_29 - 209 AAA_31 PF13614.1 157 3.9e-06 19.6 0.0 2 2 0.055 5 -0.2 0.0 109 127 68 86 62 113 0.68 # 22615 # 23241 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_48 - 503 AAA_11 PF13086.1 236 0.00046 12.5 0.0 1 1 6.7e-06 0.00061 12.1 0.0 2 41 213 253 212 353 0.86 # 40473 # 41981 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_17 - 176 SSB PF00436.20 104 3.5e-41 132.1 0.5 1 1 5.1e-43 4.7e-41 131.7 0.5 1 101 6 109 6 112 0.96 # 13791 # 14318 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/94c76a69-6bc8-4602-80b2-4d587fac961c # Target file: checkm_output/bins/pm493/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm493/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/94c76a69-6bc8-4602-80b2-4d587fac961c checkm_output/bins/pm493/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:07:27 2017 # [ok]