# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 106 HTH_DeoR PF08220.7 57 2.6e-07 17.6 0.0 1 1 2.3e-07 4.7e-07 16.8 0.0 20 47 27 54 22 55 0.94 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 HTH_38 PF13936.1 44 1.8e-06 14.9 0.0 1 1 1.5e-06 3e-06 14.3 0.0 24 41 25 42 23 43 0.87 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 MarR PF01047.17 59 1.3e-08 21.9 0.0 1 1 1.6e-08 3.3e-08 20.7 0.0 19 49 23 53 21 56 0.92 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 HTH_Tnp_4 PF13613.1 53 3.8e-06 13.9 0.0 1 1 3.2e-06 6.5e-06 13.2 0.0 22 44 24 46 23 48 0.91 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 GntR PF00392.16 64 7.6e-08 19.2 0.0 1 1 5.1e-08 1e-07 18.8 0.0 27 58 24 55 9 60 0.89 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 HTH_3 PF01381.17 55 6e-08 20.0 0.0 1 1 4.6e-08 9.2e-08 19.4 0.0 12 31 24 43 23 49 0.91 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 HTH_23 PF13384.1 50 1.6e-07 18.4 0.0 1 1 1.7e-07 3.4e-07 17.4 0.0 24 39 28 43 27 51 0.89 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 RepL PF05732.6 165 7.2e-07 15.9 0.0 1 1 4.3e-07 8.7e-07 15.7 0.0 59 129 4 79 2 95 0.83 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 HTH_19 PF12844.2 64 1.1e-05 12.9 0.0 1 1 1e-05 2e-05 12.1 0.0 18 34 27 43 24 48 0.95 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 HTH_28 PF13518.1 52 2.7e-08 21.2 0.0 1 1 2.1e-08 4.2e-08 20.6 0.0 18 44 27 51 20 59 0.80 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 HTH_36 PF13730.1 55 5e-10 26.9 0.0 1 1 4e-10 8e-10 26.3 0.0 7 53 2 49 1 51 0.93 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 MerR PF00376.18 38 1.6e-05 11.9 0.0 1 1 1.4e-05 2.8e-05 11.1 0.0 5 19 27 41 21 56 0.94 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 HTH_17 PF12728.2 51 4e-07 17.7 0.0 1 1 3.3e-07 6.6e-07 17.0 0.0 7 23 27 43 24 61 0.78 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 HTH_11 PF08279.7 55 3.8e-09 23.6 0.0 1 1 3.7e-09 7.4e-09 22.7 0.0 19 44 25 54 23 59 0.84 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 MarR_2 PF12802.2 62 1.4e-05 12.2 0.0 1 1 1.1e-05 2.2e-05 11.6 0.0 26 54 26 54 16 59 0.87 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 TrmB PF01978.14 68 2.8e-06 14.5 0.0 1 1 2.2e-06 4.4e-06 13.9 0.0 28 57 27 56 20 68 0.83 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 1_2 - 106 HTH_Crp_2 PF13545.1 76 5.4e-08 20.1 0.0 1 1 3.8e-08 7.7e-08 19.6 0.0 29 58 22 51 4 56 0.85 # 1222 # 1539 # -1 # ID=1_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/464ff9a2-6a8b-4d95-a97f-ff22937fd67f # Target file: checkm_output/bins/pm491/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm491/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/464ff9a2-6a8b-4d95-a97f-ff22937fd67f checkm_output/bins/pm491/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:07:21 2017 # [ok]