# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 328 KaiC PF06745.8 227 0.00016 12.5 0.0 1 1 7.7e-06 0.00032 11.5 0.0 15 36 154 175 130 194 0.85 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_26 - 836 ABC_tran PF00005.22 137 1.9e-06 19.9 0.0 1 1 3.2e-07 6.8e-06 18.1 0.0 5 37 450 482 447 623 0.83 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_29 - 328 ABC_tran PF00005.22 137 0.00018 13.5 0.0 1 1 1.4e-05 0.00029 12.8 0.0 4 34 151 181 148 230 0.85 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_29 - 328 Sigma54_activat PF00158.21 168 6.1e-06 17.5 0.0 1 1 2.6e-07 1.1e-05 16.6 0.0 8 46 144 182 138 221 0.80 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_29 - 328 FtsK_SpoIIIE PF01580.13 205 1.7e-08 25.9 0.1 1 1 1.8e-09 3.8e-08 24.7 0.0 14 85 128 204 124 229 0.82 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_26 - 836 FtsK_SpoIIIE PF01580.13 205 5.5e-05 14.4 0.1 1 1 4.8e-06 0.0001 13.5 0.1 38 58 456 476 436 482 0.83 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_29 - 328 MobB PF03205.9 140 2.9e-05 15.5 0.1 1 1 1.7e-06 7.2e-05 14.2 0.1 3 26 161 184 159 220 0.88 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_29 - 328 UvrD-helicase PF00580.16 315 2.5e-05 15.3 0.1 1 1 8.7e-07 3.7e-05 14.8 0.1 4 51 146 194 143 199 0.80 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_15 - 210 TetR_N PF00440.18 47 0.00046 11.6 2.8 1 2 0.093 3.9 -1.0 0.0 13 21 19 27 17 27 0.90 # 14041 # 14670 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.630 1_15 - 210 TetR_N PF00440.18 47 0.00046 11.6 2.8 2 2 3.1e-05 0.0013 10.1 0.5 3 34 165 193 164 195 0.86 # 14041 # 14670 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.630 1_29 - 328 AAA_19 PF13245.1 76 1.6e-10 32.4 0.7 1 1 1.3e-11 5.6e-10 30.6 0.4 1 52 149 198 149 214 0.87 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_39 - 252 CbiA PF01656.18 195 4.7e-11 34.1 0.1 1 1 1.4e-12 6e-11 33.7 0.1 4 103 20 102 18 198 0.81 # 32316 # 33071 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.587 1_26 - 836 AAA_23 PF13476.1 202 3.4e-06 19.2 0.0 1 1 1.7e-07 7e-06 18.1 0.0 20 38 457 475 446 495 0.86 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_26 - 836 AAA_24 PF13479.1 213 0.00044 11.5 0.1 1 1 2.9e-05 0.0012 10.1 0.1 6 24 459 477 458 480 0.89 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_29 - 328 Zeta_toxin PF06414.7 201 2.3e-06 18.5 0.0 1 1 1.9e-07 4.1e-06 17.7 0.0 12 71 154 218 144 238 0.74 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_39 - 252 Zeta_toxin PF06414.7 201 4.4e-06 17.6 0.0 1 1 4e-07 8.4e-06 16.6 0.0 12 106 11 105 3 139 0.78 # 32316 # 33071 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.587 1_29 - 328 AAA_30 PF13604.1 196 2.2e-07 22.3 0.2 1 1 1.1e-08 4.8e-07 21.2 0.1 3 51 144 193 142 210 0.80 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_1 - 649 TraG-D_C PF12696.2 128 1.7e-38 123.1 0.0 1 1 6.4e-40 2.7e-38 122.5 0.0 1 127 447 568 447 569 0.89 # 1 # 1947 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_29 - 328 Bac_DnaA PF00308.13 219 7.7e-05 14.1 0.0 1 1 2.6e-06 0.00011 13.6 0.0 3 71 130 195 128 237 0.86 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_39 - 252 MipZ PF09140.6 261 7.6e-05 13.5 0.0 1 1 2.7e-06 0.00012 12.9 0.0 8 49 22 63 16 115 0.81 # 32316 # 33071 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.587 1_26 - 836 AAA_21 PF13304.1 303 6.5e-06 17.9 0.0 1 2 9.9e-06 0.00041 12.0 0.0 2 25 459 485 458 524 0.80 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_26 - 836 AAA_21 PF13304.1 303 6.5e-06 17.9 0.0 2 2 0.0042 0.18 3.3 0.0 271 299 677 705 676 706 0.95 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_30 - 87 HTH_37 PF13744.1 80 2.4e-05 15.9 0.0 1 1 6.3e-07 2.6e-05 15.7 0.0 15 55 19 59 4 77 0.79 # 26982 # 27242 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.567 1_5 - 672 zf-C4_Topoisom PF01396.14 39 9.6e-11 32.8 14.3 1 2 4.8e-08 2e-06 19.0 0.6 4 37 562 594 559 596 0.92 # 6781 # 8796 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_5 - 672 zf-C4_Topoisom PF01396.14 39 9.6e-11 32.8 14.3 2 2 2.1e-07 8.8e-06 16.9 7.4 3 35 611 654 609 657 0.81 # 6781 # 8796 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_30 - 87 HTH_25 PF13413.1 62 3.5e-05 15.1 0.0 1 1 1.3e-06 5.4e-05 14.5 0.0 2 34 27 59 26 65 0.93 # 26982 # 27242 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.567 1_29 - 328 cobW PF02492.14 178 0.00016 12.8 0.1 1 1 8.8e-06 0.00037 11.6 0.1 4 44 162 204 160 234 0.84 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_29 - 328 AAA_16 PF13191.1 185 4.2e-06 18.5 0.1 1 1 4.7e-07 9.9e-06 17.3 0.0 22 52 156 189 144 295 0.78 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_26 - 836 AAA_16 PF13191.1 185 8.2e-05 14.3 0.0 1 1 1.4e-05 0.0003 12.5 0.0 23 51 455 483 447 604 0.80 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_26 - 836 AAA_22 PF13401.1 131 3.6e-07 22.1 0.0 1 1 4e-08 1.7e-06 19.9 0.0 5 56 457 509 454 578 0.83 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_29 - 328 TIGR00362 TIGR00362 437 3.7e-07 20.8 0.0 1 1 9.9e-09 4.2e-07 20.7 0.0 101 174 125 195 18 203 0.85 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_26 - 836 AAA_29 PF13555.1 62 8.4e-07 20.2 0.0 1 1 9e-08 1.9e-06 19.1 0.0 23 45 457 478 448 488 0.84 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_29 - 328 AAA_29 PF13555.1 62 5e-05 14.5 0.0 1 1 4.7e-06 9.9e-05 13.6 0.0 22 43 157 178 147 188 0.82 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_29 - 328 AAA_28 PF13521.1 163 0.0002 13.0 0.1 1 1 8.8e-06 0.00037 12.2 0.1 2 18 161 177 160 201 0.85 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_30 - 87 HTH_3 PF01381.17 55 7.6e-12 36.7 0.0 1 1 2.3e-13 9.7e-12 36.3 0.0 2 52 28 78 27 78 0.97 # 26982 # 27242 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.567 1_15 - 210 HTH_23 PF13384.1 50 0.00013 13.3 0.1 1 1 1e-05 0.00043 11.7 0.0 12 40 170 198 166 207 0.87 # 14041 # 14670 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.630 1_15 - 210 HTH_7 PF02796.10 45 0.00023 12.8 0.0 1 1 1.4e-05 0.00058 11.5 0.0 1 39 154 193 154 198 0.92 # 14041 # 14670 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.630 1_30 - 87 HTH_19 PF12844.2 64 3.3e-13 41.3 0.0 1 1 9.8e-15 4.1e-13 41.0 0.0 2 59 25 82 24 85 0.96 # 26982 # 27242 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.567 1_29 - 328 Mg_chelatase PF01078.16 207 3.4e-05 14.7 0.0 1 1 1.6e-06 6.9e-05 13.7 0.0 10 54 146 190 140 209 0.86 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_29 - 328 PhoH PF02562.11 205 2e-05 15.5 0.2 1 1 8.7e-07 3.7e-05 14.7 0.2 5 56 143 195 141 210 0.80 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_8 - 242 SprT-like PF10263.4 157 2.2e-33 106.8 0.0 1 1 1e-34 4.2e-33 105.9 0.0 1 151 18 215 18 220 0.85 # 10120 # 10845 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.601 1_29 - 328 ResIII PF04851.10 184 4.1e-06 18.4 0.0 1 1 1.5e-07 6.5e-06 17.8 0.0 6 62 145 200 140 207 0.84 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_1 - 649 TrwB_AAD_bind PF10412.4 386 2.4e-27 87.1 0.0 1 2 0.021 0.29 1.3 0.0 76 125 219 274 153 290 0.72 # 1 # 1947 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_1 - 649 TrwB_AAD_bind PF10412.4 386 2.4e-27 87.1 0.0 2 2 2.1e-27 3e-26 83.5 0.0 164 366 356 568 343 579 0.89 # 1 # 1947 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_29 - 328 TrwB_AAD_bind PF10412.4 386 8.7e-08 22.7 0.1 1 1 1e-08 1.4e-07 22.1 0.1 14 55 157 200 150 214 0.92 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_26 - 836 TrwB_AAD_bind PF10412.4 386 0.00014 12.2 0.1 1 1 4.1e-05 0.00057 10.2 0.0 15 42 456 483 451 489 0.87 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_29 - 328 DUF258 PF03193.11 161 1.4e-05 16.0 0.0 1 1 1.1e-06 2.2e-05 15.3 0.0 20 57 142 180 125 215 0.84 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_26 - 836 DUF258 PF03193.11 161 0.0001 13.2 0.0 1 1 9.6e-06 0.0002 12.2 0.0 27 58 447 479 428 505 0.78 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_26 - 836 DUF87 PF01935.12 229 3.6e-05 15.3 0.0 1 1 4e-06 8.4e-05 14.1 0.0 25 44 458 477 440 488 0.86 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_29 - 328 DUF87 PF01935.12 229 6.1e-05 14.6 0.0 1 1 4.6e-06 9.6e-05 13.9 0.0 24 79 159 210 152 237 0.79 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_8 - 242 WLM PF08325.5 186 0.00015 13.3 0.0 1 1 5.1e-06 0.00021 12.8 0.0 72 97 73 98 70 155 0.84 # 10120 # 10845 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.601 1_29 - 328 Sigma54_activ_2 PF14532.1 138 0.00011 13.9 0.0 1 1 4.8e-06 0.0002 13.1 0.0 8 58 145 198 139 218 0.75 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_31 - 414 RPA PF10134.4 229 8.7e-72 232.7 0.0 1 1 2.8e-73 1.2e-71 232.3 0.0 1 229 127 369 127 369 0.94 # 27400 # 28641 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.619 1_29 - 328 DEAD PF00270.24 169 8.4e-07 20.3 0.1 1 1 3.4e-08 1.4e-06 19.6 0.1 1 58 144 202 144 228 0.85 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_30 - 87 HTH_31 PF13560.1 64 1.2e-11 36.4 0.0 1 1 3.8e-13 1.6e-11 36.0 0.0 2 57 23 77 22 82 0.92 # 26982 # 27242 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.567 1_29 - 328 T2SE PF00437.15 272 1.2e-85 278.4 0.3 1 1 6.4e-87 1.4e-85 278.1 0.3 4 270 35 301 32 303 0.98 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_26 - 836 T2SE PF00437.15 272 0.00024 11.7 0.0 1 1 2e-05 0.00042 10.9 0.0 121 154 449 482 434 487 0.80 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_29 - 328 NACHT PF05729.7 166 9.7e-06 17.0 0.0 1 1 5e-07 2.1e-05 15.9 0.0 2 39 160 194 159 221 0.81 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_29 - 328 UPF0079 PF02367.12 123 0.00093 10.5 1.3 1 1 4.1e-05 0.0017 9.7 0.3 13 41 156 184 144 228 0.82 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_39 - 252 AAA_17 PF13207.1 121 6e-06 18.8 0.0 1 1 5.6e-07 1.2e-05 17.9 0.0 6 78 22 109 18 135 0.64 # 32316 # 33071 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.587 1_26 - 836 AAA_17 PF13207.1 121 0.00032 13.2 1.2 1 1 0.0001 0.0021 10.6 0.2 3 22 460 479 459 575 0.80 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_26 - 836 AAA_25 PF13481.1 194 0.00016 12.7 0.0 1 1 9e-06 0.00038 11.6 0.0 34 55 457 478 433 508 0.80 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_5 - 672 zf-FPG_IleRS PF06827.9 30 0.00077 10.9 1.5 1 2 0.0002 0.0083 7.6 0.1 2 16 560 574 559 579 0.83 # 6781 # 8796 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_5 - 672 zf-FPG_IleRS PF06827.9 30 0.00077 10.9 1.5 2 2 0.014 0.59 1.6 0.1 1 11 609 619 609 623 0.80 # 6781 # 8796 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_13 - 208 YajC PF02699.10 83 0.00031 12.1 0.4 1 2 0.098 4.1 -1.1 1.0 5 18 74 87 68 93 0.66 # 12731 # 13354 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_13 - 208 YajC PF02699.10 83 0.00031 12.1 0.4 2 2 6.3e-05 0.0026 9.2 0.0 3 81 120 195 118 197 0.81 # 12731 # 13354 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_39 - 252 AAA_33 PF13671.1 143 0.00023 12.7 0.0 1 1 9.6e-06 0.00041 11.9 0.0 6 80 22 103 18 145 0.85 # 32316 # 33071 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.587 1_1 - 649 T4SS-DNA_transf PF02534.9 469 8.7e-111 362.3 0.0 1 1 4.5e-112 1.9e-110 361.2 0.0 3 456 111 612 109 624 0.90 # 1 # 1947 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_29 - 328 RNA_helicase PF00910.17 107 0.00027 12.8 0.0 1 1 1.2e-05 0.00051 11.9 0.0 1 26 161 186 161 206 0.84 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_9 - 77 HTH_17 PF12728.2 51 0.00033 12.6 0.0 1 1 1.1e-05 0.00045 12.2 0.0 3 31 7 42 5 62 0.74 # 10832 # 11062 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_5 - 672 Zn-ribbon_8 PF09723.5 42 0.00024 12.8 2.4 1 2 0.002 0.084 4.6 0.2 26 40 559 572 550 573 0.81 # 6781 # 8796 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_5 - 672 Zn-ribbon_8 PF09723.5 42 0.00024 12.8 2.4 2 2 0.00035 0.015 7.1 0.2 27 40 610 623 606 625 0.83 # 6781 # 8796 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_5 - 672 Zn_Tnp_IS1595 PF12760.2 46 0.014 7.0 9.5 1 2 0.0027 0.11 4.1 1.1 20 45 561 589 550 590 0.74 # 6781 # 8796 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_5 - 672 Zn_Tnp_IS1595 PF12760.2 46 0.014 7.0 9.5 2 2 0.00029 0.012 7.2 0.4 16 33 607 624 607 645 0.76 # 6781 # 8796 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 1_38 - 152 LacI PF00356.16 46 8.2e-05 13.9 0.2 1 1 1.9e-06 8.2e-05 13.9 0.2 12 40 65 94 61 96 0.92 # 31849 # 32304 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.640 1_26 - 836 AAA_10 PF12846.2 304 1.3e-35 114.9 0.0 1 1 1.9e-36 2.7e-35 113.9 0.0 2 292 457 734 457 740 0.86 # 22481 # 24988 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.610 1_1 - 649 AAA_10 PF12846.2 304 2.1e-10 32.1 0.0 1 1 2.2e-11 3.1e-10 31.6 0.0 4 302 156 526 153 528 0.76 # 1 # 1947 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_29 - 328 AAA_10 PF12846.2 304 3.9e-06 18.1 0.0 1 1 4.1e-07 5.8e-06 17.5 0.0 2 39 159 198 158 220 0.85 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_39 - 252 ArsA_ATPase PF02374.10 305 4.1e-06 17.6 0.0 1 1 1.6e-07 6.5e-06 17.0 0.0 4 42 18 56 15 102 0.82 # 32316 # 33071 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.587 1_29 - 328 IstB_IS21 PF01695.12 178 7.6e-06 17.1 0.0 1 1 3.1e-07 1.3e-05 16.4 0.0 44 68 155 179 127 222 0.80 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_29 - 328 AAA_11 PF13086.1 236 1.6e-05 16.2 0.0 1 1 5.9e-07 2.5e-05 15.6 0.0 4 44 145 215 142 252 0.64 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 1_29 - 328 GTP_EFTU PF00009.22 188 0.00016 12.8 0.0 1 1 6.6e-06 0.00028 12.0 0.0 2 28 157 183 156 214 0.89 # 25819 # 26802 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.595 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/cc3251b6-ab1b-4bee-b285-20c312ebd4da # Target file: checkm_output/bins/pm485/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm485/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cc3251b6-ab1b-4bee-b285-20c312ebd4da checkm_output/bins/pm485/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:07:09 2017 # [ok]