# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 664 Cons_hypoth95 PF03602.10 183 9.9e-06 14.2 0.0 1 1 3.1e-06 2.2e-05 13.1 0.0 104 143 186 224 163 251 0.78 # 5635 # 7626 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.376 1_6 - 142 HTH_IclR PF09339.5 52 3.1e-06 16.0 0.1 1 1 1e-06 7.2e-06 14.8 0.1 20 39 5 24 2 26 0.91 # 7913 # 8338 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_6 - 142 vATP-synt_E PF01991.13 198 5.4e-06 14.9 0.8 1 2 0.1 0.7 -1.8 0.1 31 58 19 46 7 48 0.62 # 7913 # 8338 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_6 - 142 vATP-synt_E PF01991.13 198 5.4e-06 14.9 0.8 2 2 7.7e-07 5.4e-06 14.9 0.8 35 80 67 112 58 129 0.86 # 7913 # 8338 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_6 - 142 HTH_38 PF13936.1 44 8.2e-06 14.6 0.1 1 1 3e-06 2.1e-05 13.3 0.1 22 44 5 27 4 27 0.90 # 7913 # 8338 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 879 UvrD-helicase PF00580.16 315 5.9e-05 11.5 3.0 1 1 4.3e-05 0.0003 9.2 3.0 15 254 72 411 59 417 0.56 # 2994 # 5630 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_3 - 198 DUF3584 PF12128.3 1201 1.9e-05 11.2 6.7 1 1 3.5e-06 2.5e-05 10.8 6.7 600 689 13 108 5 115 0.74 # 2358 # 2951 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_7 - 317 Rep_3 PF01051.16 222 3.9e-48 153.0 6.5 1 1 5.6e-49 3.9e-48 153.0 6.5 3 221 3 223 1 224 0.90 # 8346 # 9296 # -1 # ID=1_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.371 1_1 - 156 Parvo_NS1 PF01057.12 272 7.5e-05 10.8 1.0 1 1 1.4e-05 9.6e-05 10.4 1.0 24 100 7 83 3 86 0.91 # 606 # 1073 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_5 - 664 N6_N4_Mtase PF01555.13 231 2.3e-48 153.8 0.0 1 1 9.7e-49 6.8e-48 152.2 0.0 1 228 196 522 196 524 0.85 # 5635 # 7626 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.376 1_6 - 142 MerR_1 PF13411.1 69 8.3e-07 18.0 0.4 1 2 3.9e-07 2.7e-06 16.3 0.0 2 34 5 37 4 41 0.89 # 7913 # 8338 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_6 - 142 MerR_1 PF13411.1 69 8.3e-07 18.0 0.4 2 2 0.088 0.61 -0.8 0.1 40 54 103 117 84 121 0.77 # 7913 # 8338 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_6 - 142 NUMOD1 PF07453.8 37 1.9e-05 13.7 0.0 1 1 5.5e-06 3.8e-05 12.7 0.0 18 37 5 24 4 24 0.95 # 7913 # 8338 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_6 - 142 HTH_23 PF13384.1 50 2.9e-05 12.9 1.6 1 1 4.8e-06 3.4e-05 12.7 0.1 19 40 5 26 1 28 0.92 # 7913 # 8338 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 879 ResIII PF04851.10 184 3.1e-31 97.8 1.2 1 1 5.8e-32 4.1e-31 97.4 0.2 3 182 44 244 42 246 0.89 # 2994 # 5630 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 879 DEAD PF00270.24 169 1e-07 20.7 0.8 1 2 7.5e-08 5.3e-07 18.4 0.0 6 133 62 202 58 246 0.72 # 2994 # 5630 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 879 DEAD PF00270.24 169 1e-07 20.7 0.8 2 2 0.072 0.51 -1.0 0.0 88 119 327 358 294 362 0.65 # 2994 # 5630 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_3 - 198 GrpE PF01025.14 166 3.4e-05 12.6 2.5 1 1 7.8e-06 5.5e-05 11.9 2.5 21 89 15 89 2 116 0.58 # 2358 # 2951 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_6 - 142 MerR PF00376.18 38 2.8e-06 16.1 0.0 1 1 6.3e-07 4.4e-06 15.4 0.0 2 30 6 33 5 38 0.82 # 7913 # 8338 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_6 - 142 HTH_17 PF12728.2 51 4.5e-09 25.7 0.0 1 1 1.1e-09 7.7e-09 25.0 0.0 2 44 4 47 3 51 0.78 # 7913 # 8338 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_3 - 198 Seryl_tRNA_N PF02403.17 108 0.00014 11.1 6.4 1 2 9.4e-05 0.00066 8.9 1.0 56 103 2 49 1 53 0.83 # 2358 # 2951 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_3 - 198 Seryl_tRNA_N PF02403.17 108 0.00014 11.1 6.4 2 2 0.0014 0.0099 5.1 0.4 55 102 68 114 55 115 0.76 # 2358 # 2951 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_3 - 198 AAA_13 PF13166.1 712 4.7e-05 11.0 3.4 1 1 8.2e-06 5.7e-05 10.7 3.4 364 471 4 112 1 121 0.41 # 2358 # 2951 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_6 - 142 Phage_AlpA PF05930.7 51 3.2e-05 12.9 0.0 1 1 8.1e-06 5.7e-05 12.1 0.0 3 28 3 28 1 33 0.91 # 7913 # 8338 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/30ca54d6-bdda-4dac-959f-c04feda8b055 # Target file: checkm_output/bins/pm48/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm48/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/30ca54d6-bdda-4dac-959f-c04feda8b055 checkm_output/bins/pm48/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:07:00 2017 # [ok]